Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01475 ATGGCTTTCACTACTCACACTCCAAAACATGGGGTGGTTTTGGTTTTAGCTTTGCAGCTAACCTTCCTTTTGATGGGTACCTCTTCAGCCCAACTCTCCATTTCTTTCTACTCCAAGACTTGCCCTAAGCTCCTCTCTATAGTCCGCTCCGGGGTTCAATCTGCCATCGTTAAGGAAACCCGTATAGGCGCTTCCCTCCTTCGTCTCCACTTCCATGACTGCTTCGTTAACGGATGTGATGGGTCGATTCTTTTAGACGACACTACAACTTTCAGAGGAGAGCAAACTGCGCCTCCAAATAATAGGTCAGTTAGAGGCTTTGATGTCATAAAAGCTATCAAGAGTAATGTAGAAAAAGTTTGTCCTGGTGTGGTCTCATGTGCTGATATTTTGACTCTTACTGCGCGTGACTCTGTTAACATTTTGGGAGGACCAACCTGGGACGTCAAATTAGGAAGAAAAGATTCAAAGACAGCCAGTTTCTCCGCCGCCAGCAGTGGCGTCATCCCTCCACCTAGTTCAACCCTTGCCAACCTCATCAATAGATTCAGTGCTGTAGGCCTCTCCACCAAAGACATGGTTGCCTTGTCTGGTGCACACACCATAGGCCTAGCAAGGTGTGTATCGTTTAGGAACCGCATATACAACGAGAGCAACATAGACGCTTCATTCGCAAAGCTAAGACAGAGGAATTGCCCGAGAAGTGGAGGAGATGACAATCTTGCCCCTCTAGATGTTACAACCCCAAAACTTTTCGACAACTATTACTACAAGAACCTTTTGAACAAGAAGGGGTTGCTCCACTCTGACCAAATCCTCCACAACGGCGGATCCACCGATTCCTTGGTGGAACAGTACAGTAAAAATGATAAGACTTTCGACGCCGATTTCGTGGTGGCGATGATTAAAATGGGAGACATCCGACCGCTCACCGGATCCCAAGGCGAGATCAGGAAGATCTGCAGCAGACCCAACTGA 978 47.44 MAFTTHTPKHGVVLVLALQLTFLLMGTSSAQLSISFYSKTCPKLLSIVRSGVQSAIVKETRIGASLLRLHFHDCFVNGCDGSILLDDTTTFRGEQTAPPNNRSVRGFDVIKAIKSNVEKVCPGVVSCADILTLTARDSVNILGGPTWDVKLGRKDSKTASFSAASSGVIPPPSSTLANLINRFSAVGLSTKDMVALSGAHTIGLARCVSFRNRIYNESNIDASFAKLRQRNCPRSGGDDNLAPLDVTTPKLFDNYYYKNLLNKKGLLHSDQILHNGGSTDSLVEQYSKNDKTFDADFVVAMIKMGDIRPLTGSQGEIRKICSRPN 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 18880440 18882896 + Lsi10G014750.1 Lsi10g01475 673032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01475 325 ProSiteProfiles Plant heme peroxidase family profile. 31 325 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01475 325 PANTHER PEROXIDASE 13 322 - -
Lsi10g01475 325 PANTHER PEROXIDASE 72-RELATED 13 322 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01475 325 Pfam Peroxidase 49 289 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01475 325 SUPERFAMILY Heme-dependent peroxidases 31 325 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi10g01475 325 PRINTS Plant peroxidase signature 299 312 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01475 325 PRINTS Plant peroxidase signature 191 203 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01475 325 PRINTS Plant peroxidase signature 259 276 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01475 325 PRINTS Plant peroxidase signature 105 118 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01475 325 PRINTS Plant peroxidase signature 65 85 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01475 325 PRINTS Plant peroxidase signature 143 158 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01475 325 PRINTS Plant peroxidase signature 41 60 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01475 325 PRINTS Plant peroxidase signature 243 258 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01475 325 PRINTS Plant peroxidase signature 124 134 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01475 325 CDD secretory_peroxidase 31 323 IPR033905 GO:0004601|GO:0042744
Lsi10g01475 325 ProSitePatterns Peroxidases proximal heme-ligand signature. 192 202 IPR019793 -
Lsi10g01475 325 Gene3D - 36 322 - -
Lsi10g01475 325 Gene3D Peroxidase, domain 2 170 304 - -
Lsi10g01475 325 ProSitePatterns Peroxidases active site signature. 63 74 IPR019794 GO:0004601
Lsi10g01475 325 PRINTS Haem peroxidase superfamily signature 143 155 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01475 325 PRINTS Haem peroxidase superfamily signature 245 260 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01475 325 PRINTS Haem peroxidase superfamily signature 192 207 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01475 325 PRINTS Haem peroxidase superfamily signature 63 77 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01475 325 PRINTS Haem peroxidase superfamily signature 125 142 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00641 Lsi-Chr1:5166953 Lsi10g01475 Lsi-Chr10:18880440 2.51E-105 dispersed
Lsi01g00995 Lsi-Chr1:8224675 Lsi10g01475 Lsi-Chr10:18880440 3.20E-105 dispersed
Lsi09g01505 Lsi-Chr9:23101471 Lsi10g01475 Lsi-Chr10:18880440 4.03E-95 dispersed
Lsi10g01473 Lsi-Chr10:18863469 Lsi10g01475 Lsi-Chr10:18880440 4.08E-120 dispersed
Lsi10g01475 Lsi-Chr10:18880440 Lsi11g00022 Lsi-Chr11:240308 1.97E-130 dispersed
Lsi11g00023 Lsi-Chr11:245729 Lsi10g01475 Lsi-Chr10:18880440 1.18E-99 dispersed
Lsi10g01474 Lsi-Chr10:18870058 Lsi10g01475 Lsi-Chr10:18880440 7.26E-163 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01475 K00430 - csv:101207371 582.022