Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01478 ATGGAGAATAAGGCGAGTGTGATGGTTCAACGGTATGAATTAGGGAGATTGCTCGGCCAAGGAACCTTCGCAAAGGTATATTATGCGAGGAATACAGGAAACAATCAAAGTGTGGCCATTAAGGTGATTGATAAGGAAAAGATTACGAAGGCTTCGCTCATCGATCAGATTAAGCGTGAAATATCTATTATGAGACTTGTTAGACATCCTAATATTCTACGTCTATATGAGGTTATGGCTACCAAGACTAAGATCTACTTCGTTTTGGAATATGCTAAAGGTGGTGAGCTCTTTGACAAGGTTGCTAAAGGGAGGCTGAAGGAGGATATTGCTTGGAAATACTTTTATCAGTTAATCAATGCTGTTGATTTTTGTCACAGTAGGGGAGTGTATCACCGTGATATAAAGCCAGAGAACCTACTGCTTGATGAAAATGAGAATCTGAAGGTGTCTGATTTTGGTTTAAGTGCTTTAGCCGAGTCCAAGCGTCAAGATGGGTTGCTACATACGACTTGTGGTACACCAGCTTATGTTGCCCCTGAAGTCATCAATAGGAAGGGCTATGATGGTGCAAAAGCTGATATCTGGTCTTGTGGAGTAGTTTTGTTTGTCCTATTGGCAGGTTATCTCCCATTCCACAATTCGAATTTGATGGAGATGTATCGGAAGATTGGAAAAGCAGAGTATAAATGCCCTAGTTGGTTCCCTCGTGAAGTGCGGCGGTTACTAAGCAGGATGCTTGATCCGGACCCCATTACTAGGACTTCAATAGCAATGGTAAGACAAAGTTCTTGGTTCAAAAAGGGATTGAGGTCTAAGAATGTAAAAAGTGGAATAGAAAATAATGCTGTAGCATCTGAAGATGCAGCAGCTGTTTCCGGACCATCTGAGAGTTGTGTGCCAGCAGATGGAAATCGAGAGCCAGATAGACCTCCGACTTTGAATGCTTTCGATATTATCTCCCTTTCTGCGGGATTCAATTTATCCAGTTTGTTTGAAGACAATTCAAAGAAGAAAGAAACATTGTTTACTTGTAGAAAACCAGCCTCTGTTATTCTCTCAAAACTAGAAGAAATGGCTAAACTTCTTCGGTTTAGAGTGCAGAAGAAGGAAGCAGGCCTATTGAAGTTTGAGGCACTAACAGAGGGAAAAAAGGGGGTATTATCCATTGATACAGAGATCTTTGAGGTTACTCCATCTTTTTATTTGGTGGAAATGAAAAAATCAAATGGAGACACATTGGAATATCAGAAGATATTGAAAGAGGACATAAGGCCAGCTCTACAGGATATTGTATGGGTTTGGCGAGGAGAGCAGGAGCAGCAGCAACAAAATCCTCAGCCTCAGCCTCTCCAACCGCAGGATCAAGCTCGAGATCCTTATCCGGAGCAAGAGGGTGCTTCACAACCGCAGTAG 1416 42.02 MENKASVMVQRYELGRLLGQGTFAKVYYARNTGNNQSVAIKVIDKEKITKASLIDQIKREISIMRLVRHPNILRLYEVMATKTKIYFVLEYAKGGELFDKVAKGRLKEDIAWKYFYQLINAVDFCHSRGVYHRDIKPENLLLDENENLKVSDFGLSALAESKRQDGLLHTTCGTPAYVAPEVINRKGYDGAKADIWSCGVVLFVLLAGYLPFHNSNLMEMYRKIGKAEYKCPSWFPREVRRLLSRMLDPDPITRTSIAMVRQSSWFKKGLRSKNVKSGIENNAVASEDAAAVSGPSESCVPADGNREPDRPPTLNAFDIISLSAGFNLSSLFEDNSKKKETLFTCRKPASVILSKLEEMAKLLRFRVQKKEAGLLKFEALTEGKKGVLSIDTEIFEVTPSFYLVEMKKSNGDTLEYQKILKEDIRPALQDIVWVWRGEQEQQQQNPQPQPLQPQDQARDPYPEQEGASQPQ 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 18893770 18895185 + Lsi10G014780.1 Lsi10g01478 673035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01478 471 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 10 2 448 - -
Lsi10g01478 471 Pfam NAF domain 311 369 IPR004041 GO:0007165
Lsi10g01478 471 MobiDBLite consensus disorder prediction 438 471 - -
Lsi10g01478 471 PANTHER - 2 448 - -
Lsi10g01478 471 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Lsi10g01478 471 MobiDBLite consensus disorder prediction 438 454 - -
Lsi10g01478 471 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Lsi10g01478 471 MobiDBLite consensus disorder prediction 286 308 - -
Lsi10g01478 471 Gene3D Kinase associated domain 1, KA1 309 434 - -
Lsi10g01478 471 CDD CIPK_C 315 429 - -
Lsi10g01478 471 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g01478 471 ProSiteProfiles NAF domain profile. 309 333 IPR018451 GO:0007165
Lsi10g01478 471 Gene3D Transferase(Phosphotransferase) domain 1 2 298 - -
Lsi10g01478 471 CDD STKc_SnRK3 11 265 - -
Lsi10g01478 471 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g01478 471 SUPERFAMILY Protein kinase-like (PK-like) 9 267 IPR011009 -
Lsi10g01478 471 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01604 Lsi-Chr1:14328759 Lsi10g01478 Lsi-Chr10:18893770 0 dispersed
Lsi02g00815 Lsi-Chr2:7601919 Lsi10g01478 Lsi-Chr10:18893770 0 dispersed
Lsi02g00916 Lsi-Chr2:8801729 Lsi10g01478 Lsi-Chr10:18893770 3.93E-150 dispersed
Lsi10g01478 Lsi-Chr10:18893770 Lsi11g00402 Lsi-Chr11:4196553 4.33E-177 dispersed
Lsi10g01478 Lsi-Chr10:18893770 Lsi10g01479 Lsi-Chr10:18898095 8.93E-145 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83991 PF00069 Pkinase 1.20E-74 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01478 - - csv:101206404 865.914