Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi10g01478 | ATGGAGAATAAGGCGAGTGTGATGGTTCAACGGTATGAATTAGGGAGATTGCTCGGCCAAGGAACCTTCGCAAAGGTATATTATGCGAGGAATACAGGAAACAATCAAAGTGTGGCCATTAAGGTGATTGATAAGGAAAAGATTACGAAGGCTTCGCTCATCGATCAGATTAAGCGTGAAATATCTATTATGAGACTTGTTAGACATCCTAATATTCTACGTCTATATGAGGTTATGGCTACCAAGACTAAGATCTACTTCGTTTTGGAATATGCTAAAGGTGGTGAGCTCTTTGACAAGGTTGCTAAAGGGAGGCTGAAGGAGGATATTGCTTGGAAATACTTTTATCAGTTAATCAATGCTGTTGATTTTTGTCACAGTAGGGGAGTGTATCACCGTGATATAAAGCCAGAGAACCTACTGCTTGATGAAAATGAGAATCTGAAGGTGTCTGATTTTGGTTTAAGTGCTTTAGCCGAGTCCAAGCGTCAAGATGGGTTGCTACATACGACTTGTGGTACACCAGCTTATGTTGCCCCTGAAGTCATCAATAGGAAGGGCTATGATGGTGCAAAAGCTGATATCTGGTCTTGTGGAGTAGTTTTGTTTGTCCTATTGGCAGGTTATCTCCCATTCCACAATTCGAATTTGATGGAGATGTATCGGAAGATTGGAAAAGCAGAGTATAAATGCCCTAGTTGGTTCCCTCGTGAAGTGCGGCGGTTACTAAGCAGGATGCTTGATCCGGACCCCATTACTAGGACTTCAATAGCAATGGTAAGACAAAGTTCTTGGTTCAAAAAGGGATTGAGGTCTAAGAATGTAAAAAGTGGAATAGAAAATAATGCTGTAGCATCTGAAGATGCAGCAGCTGTTTCCGGACCATCTGAGAGTTGTGTGCCAGCAGATGGAAATCGAGAGCCAGATAGACCTCCGACTTTGAATGCTTTCGATATTATCTCCCTTTCTGCGGGATTCAATTTATCCAGTTTGTTTGAAGACAATTCAAAGAAGAAAGAAACATTGTTTACTTGTAGAAAACCAGCCTCTGTTATTCTCTCAAAACTAGAAGAAATGGCTAAACTTCTTCGGTTTAGAGTGCAGAAGAAGGAAGCAGGCCTATTGAAGTTTGAGGCACTAACAGAGGGAAAAAAGGGGGTATTATCCATTGATACAGAGATCTTTGAGGTTACTCCATCTTTTTATTTGGTGGAAATGAAAAAATCAAATGGAGACACATTGGAATATCAGAAGATATTGAAAGAGGACATAAGGCCAGCTCTACAGGATATTGTATGGGTTTGGCGAGGAGAGCAGGAGCAGCAGCAACAAAATCCTCAGCCTCAGCCTCTCCAACCGCAGGATCAAGCTCGAGATCCTTATCCGGAGCAAGAGGGTGCTTCACAACCGCAGTAG | 1416 | 42.02 | MENKASVMVQRYELGRLLGQGTFAKVYYARNTGNNQSVAIKVIDKEKITKASLIDQIKREISIMRLVRHPNILRLYEVMATKTKIYFVLEYAKGGELFDKVAKGRLKEDIAWKYFYQLINAVDFCHSRGVYHRDIKPENLLLDENENLKVSDFGLSALAESKRQDGLLHTTCGTPAYVAPEVINRKGYDGAKADIWSCGVVLFVLLAGYLPFHNSNLMEMYRKIGKAEYKCPSWFPREVRRLLSRMLDPDPITRTSIAMVRQSSWFKKGLRSKNVKSGIENNAVASEDAAAVSGPSESCVPADGNREPDRPPTLNAFDIISLSAGFNLSSLFEDNSKKKETLFTCRKPASVILSKLEEMAKLLRFRVQKKEAGLLKFEALTEGKKGVLSIDTEIFEVTPSFYLVEMKKSNGDTLEYQKILKEDIRPALQDIVWVWRGEQEQQQQNPQPQPLQPQDQARDPYPEQEGASQPQ | 471 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 18893770 | 18895185 | + | Lsi10G014780.1 | Lsi10g01478 | 673035 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi10g01478 | 471 | PANTHER | CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 10 | 2 | 448 | - | - | |
Lsi10g01478 | 471 | Pfam | NAF domain | 311 | 369 | IPR004041 | GO:0007165 | |
Lsi10g01478 | 471 | MobiDBLite | consensus disorder prediction | 438 | 471 | - | - | |
Lsi10g01478 | 471 | PANTHER | - | 2 | 448 | - | - | |
Lsi10g01478 | 471 | ProSitePatterns | Protein kinases ATP-binding region signature. | 18 | 41 | IPR017441 | GO:0005524 | |
Lsi10g01478 | 471 | MobiDBLite | consensus disorder prediction | 438 | 454 | - | - | |
Lsi10g01478 | 471 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 130 | 142 | IPR008271 | GO:0004672|GO:0006468 | |
Lsi10g01478 | 471 | MobiDBLite | consensus disorder prediction | 286 | 308 | - | - | |
Lsi10g01478 | 471 | Gene3D | Kinase associated domain 1, KA1 | 309 | 434 | - | - | |
Lsi10g01478 | 471 | CDD | CIPK_C | 315 | 429 | - | - | |
Lsi10g01478 | 471 | SMART | serkin_6 | 12 | 266 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi10g01478 | 471 | ProSiteProfiles | NAF domain profile. | 309 | 333 | IPR018451 | GO:0007165 | |
Lsi10g01478 | 471 | Gene3D | Transferase(Phosphotransferase) domain 1 | 2 | 298 | - | - | |
Lsi10g01478 | 471 | CDD | STKc_SnRK3 | 11 | 265 | - | - | |
Lsi10g01478 | 471 | ProSiteProfiles | Protein kinase domain profile. | 12 | 266 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi10g01478 | 471 | SUPERFAMILY | Protein kinase-like (PK-like) | 9 | 267 | IPR011009 | - | |
Lsi10g01478 | 471 | Pfam | Protein kinase domain | 12 | 266 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g01604 | Lsi-Chr1:14328759 | Lsi10g01478 | Lsi-Chr10:18893770 | 0 | dispersed | |
Lsi02g00815 | Lsi-Chr2:7601919 | Lsi10g01478 | Lsi-Chr10:18893770 | 0 | dispersed | |
Lsi02g00916 | Lsi-Chr2:8801729 | Lsi10g01478 | Lsi-Chr10:18893770 | 3.93E-150 | dispersed | |
Lsi10g01478 | Lsi-Chr10:18893770 | Lsi11g00402 | Lsi-Chr11:4196553 | 4.33E-177 | dispersed | |
Lsi10g01478 | Lsi-Chr10:18893770 | Lsi10g01479 | Lsi-Chr10:18898095 | 8.93E-145 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
83991 | PF00069 | Pkinase | 1.20E-74 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi10g01478 | - | - | csv:101206404 | 865.914 |