Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01479 ATGCCGGAGATCGAATCCTCTTCCCCCGACAACAATGCCCTCTTCGGCAAATACGAGCTTGGCAAGCTCCTCGGCTGCGGCGCCTTTGCCAAGGTCTACCATGCCCGCGACCTCCGCTCCGGCCAAAGCGTCGCCGTCAAGGTTATCAACAAGAAGAAGATTTATGGCACGACCTTAATGTTCAACATCAAGCGGGAGATCGCCATTATGCGACGTCTCCGTCATCCTAACATCGTTAAACTCCATGAGGTTCTCGCTACCAAAACTAAGATCTACTTCGTCTTGGAGTTCGTCAAAGGCGGCGAGCTTTTCGCCAAGATCGCCAAGGGCAGATTCAGCGAGGATCTCAGCCGGAAATTCTTCCAGCAGTTGATCTCCGCCGTTGGATTCTGTCACACGCGTGGAATCTACCACCGCGATCTGAAGCCGGAGAATCTGCTCGTCGATGAGAATGGGAATCTGAAGGTATCCGACTTTGGTCTCAGTGCGGTAACGGAACAGATCCGCGCCGATGGCCTTTTACACACTCTTTGTGGAACTCCGGCGTATGTCGCGCCGGAGATTTTGTCGAAAAAGGGATACGACGGTGCGAAAGTCGATGTGTGGTCATGTGGTGTGATTCTTTTCGTGTTGAACGCCGGTTACCTTCCGTTCAACGATCCGAATCTCATGGCGATGTATAAGAAGATTTACAAGGGGGAATATCGGTGCCCTAAATGGATGTCGCCGGATCTCAAGAGATTTCTGTCGCGACTTCTCGATACGAATCCCGAAACGAGGATAACCATTGAAGAGATTCTAAGTGATCCATGGTTCAGAAAAGGGGGAAATACAGAGATAAATTTCTACGATGATTACGAGATGAAATCGGAAGAGAAGGAAGAATCTCCCTCGATGAATTTGAACGCATTCGACATTATATCTTTCTCCTCAGGATTGGATCTGTCTGGTTTGTTCGACAATTCACAAAACCCAGTGGACGACAGTGAGCGATTCATATCGGCAGAATCGCCGGAGAAGATCGTGGAAAAACTGGAGGAATTCGCTAGGGCTGAGAATTTGAAGGTGAAGAAAAAGAAAGAATTGGGGGTTGAATTGGATGCGCAGAGTCGTAATTTTGTCGTCGGAATTGAAATTTTCCGGTTGACCGACGGATTGGCGGTGGTGGAGGTGACAAGAAAATGTGGAGATGCAGAATCGTATAAGCAAATGTTGAAGAAGAAGCTGAAAGTTCATCTCACCGGCAATGAAGCGTCGACGTCGACGTCCCGATAA 1275 48.86 MPEIESSSPDNNALFGKYELGKLLGCGAFAKVYHARDLRSGQSVAVKVINKKKIYGTTLMFNIKREIAIMRRLRHPNIVKLHEVLATKTKIYFVLEFVKGGELFAKIAKGRFSEDLSRKFFQQLISAVGFCHTRGIYHRDLKPENLLVDENGNLKVSDFGLSAVTEQIRADGLLHTLCGTPAYVAPEILSKKGYDGAKVDVWSCGVILFVLNAGYLPFNDPNLMAMYKKIYKGEYRCPKWMSPDLKRFLSRLLDTNPETRITIEEILSDPWFRKGGNTEINFYDDYEMKSEEKEESPSMNLNAFDIISFSSGLDLSGLFDNSQNPVDDSERFISAESPEKIVEKLEEFARAENLKVKKKKELGVELDAQSRNFVVGIEIFRLTDGLAVVEVTRKCGDAESYKQMLKKKLKVHLTGNEASTSTSR 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 18898095 18899369 - Lsi10G014790.1 Lsi10g01479 673036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01479 424 PANTHER - 6 419 - -
Lsi10g01479 424 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 14 6 419 - -
Lsi10g01479 424 Gene3D Phosphorylase Kinase; domain 1 4 99 - -
Lsi10g01479 424 Gene3D Kinase associated domain 1, KA1 297 415 - -
Lsi10g01479 424 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Lsi10g01479 424 Gene3D Transferase(Phosphotransferase) domain 1 100 278 - -
Lsi10g01479 424 CDD CIPK_C 302 413 - -
Lsi10g01479 424 ProSiteProfiles NAF domain profile. 296 320 IPR018451 GO:0007165
Lsi10g01479 424 SMART serkin_6 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g01479 424 SUPERFAMILY Protein kinase-like (PK-like) 15 280 IPR011009 -
Lsi10g01479 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Lsi10g01479 424 Pfam NAF domain 300 358 IPR004041 GO:0007165
Lsi10g01479 424 Pfam Protein kinase domain 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g01479 424 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01606 Lsi-Chr1:14394431 Lsi10g01479 Lsi-Chr10:18898095 0 dispersed
Lsi05g01655 Lsi-Chr5:24219412 Lsi10g01479 Lsi-Chr10:18898095 4.83E-125 dispersed
Lsi09g01709 Lsi-Chr9:25646845 Lsi10g01479 Lsi-Chr10:18898095 1.18E-49 dispersed
Lsi10g01479 Lsi-Chr10:18898095 Lsi11g00402 Lsi-Chr11:4196553 8.25E-156 dispersed
Lsi10g01478 Lsi-Chr10:18893770 Lsi10g01479 Lsi-Chr10:18898095 8.93E-145 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83992 PF00069 Pkinase 5.90E-72 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01479 - K12761 csv:101204001 734.561