Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi10g01482 | ATGTTCAAGAATACTCGAGCTGGGAATCCCAGCAGCAACCTCCATGATTGCAACTCGGAATTTGGGTATGTTGAGACCGATCCGACATGTCGTTACGGCCGTTTTGAAGAAGTTTTGGGAAAAGGGGCCATGAAGACAGTGTACAAAGCCATTGATGAGTTTCTTGGAATAGAGGTGGCGTGGAGTCAGGTGAAACTCAACGAGGTCCTCCGATCGCCCGAGGATTTGCAGCGGCTGTATTCGGAGGTTCATCTACTTAGCACACTTAAGCACGAATCGATCATGCGATTCTACACGTCTTGGATCGATATTGATCGCAAAACCTTCAACTTCATTACTGAACTGTTTACTTCTGGAACACTCAGAGAATATGGAAAGAAATATAGACGAGTCGATAGCAGAGCCATTAAGAGCTGGGCACGCCAGATTCTGCAGGGACTCATTTACTTGCATGAACACGACCCTCCAATAATACACAGAGATCTGAAGTGCGATAATATCTTTGTGAATGGCCATCTTGGGCAAGTCAAGATTGGTGACTTGGGGCTTGCAGCTATACTCCATGGTTCCAGATCTGCTCACAGTGTTATAGGCACACCGGAGTTTATGGCGCCGGAATTATACGAGGAGAATTACAACGAGCTAGTTGATGTCTACTCGTTTGGCATGTGTGTTCTGGAGATGCTTACTTCTGAGTACCCATATAGCGAGTGTTCTAATCCTGCACAGATTTACAAGAAAGTCACGTCGGGGAAGCTGCCAGCAGCATTGTACAAGATTCAAGATGTGGATGCACAGAGATTTGTTAAGAAATGCTTGGTACCGGTTTCGATGAGGGCGTCAGCGAAGGAACTCTTGGCTGATCCTTTTCTCAAAATTGATGGAGATAGACCTTCGTTGAAGGAGAGGACTCAAAACCAGAAGCCATTTCTAAATGCCAAAGAGATGGAGAAATTGCACTTGGGTGAAGGTTTAAGCAGGACCAACATGACGATCACGGGGAAGCTGAACCCCGAAGACGATACCCTCTTTCTCAGAGTTCAGATTGCCGATAAAGAAGGCTCTCTTAGGAACATATATTTCCCCTTCGACATAGTTAACGACACAGCATTAGATGTGGCAATGGAGATGGTGAAAGAGTTGGAGATCTCTGATTGGGAGCCGTTCGAAATAGCGGACATGATTGAGGGAGAGATTTCGGCTTTGGTTCCGAACTGGAATAGAAGCGAGTTATCCAAGCATAGCCTCAGCTTCAGCTATGCAGAAGAAGATGATAATGCATCTCACCATACTTTCCGCTCGGTCTCATCGTCGTCCCAAGCAACAACTTTGGGTCTCATCACCTCCCCTAGAACAAACCAAAACATATCAAATGGTTTTAGTTGGTTCCCAGATGATGCGCTTGATGATAGCAGTTCACAGTGCTCATCGGCGTCAGGAAAATACTCCAACTTGAATTACATCAGCAGCGACGAGTACGAAACCAATATGAGTTCGGTCCAGATAGATCAACATAACAACATCAATAAGATTCACAATTCCTCAAGATTTTGTCCTGTTGAGAACCGCAAGAACAAGGATTTCTTGGCTGGACTTCTATACAAGCAGAGCCAATGTGCGATAGCAGGTTCTTCTCAAGGAGTTGCCTCGTGTCGCAAAGACAAGAGGGGAACGGATGGTCGTAAATTAACAAGGAACAGATCACTAGTAGATGTACATAGCCAATTGTTGCATCGTTCGTTAGTGGAGGAAGTGAATAGGAGACGATTATTCAAAACGGTTGGAGCGGTCGAAAGCATCGGGTTTCAAGCACCTTGTGAGGTTTCTTCCAGCAAAAGGGTCTCGAGTAGGCACACGATTGGGAACCGAAGTAGCGATGTAGCAAGAACGAGAAGAAACGAGGATATTAGGTGGCAAGATGTTGGAAGGAGAACATGA | 1938 | 45.56 | MFKNTRAGNPSSNLHDCNSEFGYVETDPTCRYGRFEEVLGKGAMKTVYKAIDEFLGIEVAWSQVKLNEVLRSPEDLQRLYSEVHLLSTLKHESIMRFYTSWIDIDRKTFNFITELFTSGTLREYGKKYRRVDSRAIKSWARQILQGLIYLHEHDPPIIHRDLKCDNIFVNGHLGQVKIGDLGLAAILHGSRSAHSVIGTPEFMAPELYEENYNELVDVYSFGMCVLEMLTSEYPYSECSNPAQIYKKVTSGKLPAALYKIQDVDAQRFVKKCLVPVSMRASAKELLADPFLKIDGDRPSLKERTQNQKPFLNAKEMEKLHLGEGLSRTNMTITGKLNPEDDTLFLRVQIADKEGSLRNIYFPFDIVNDTALDVAMEMVKELEISDWEPFEIADMIEGEISALVPNWNRSELSKHSLSFSYAEEDDNASHHTFRSVSSSSQATTLGLITSPRTNQNISNGFSWFPDDALDDSSSQCSSASGKYSNLNYISSDEYETNMSSVQIDQHNNINKIHNSSRFCPVENRKNKDFLAGLLYKQSQCAIAGSSQGVASCRKDKRGTDGRKLTRNRSLVDVHSQLLHRSLVEEVNRRRLFKTVGAVESIGFQAPCEVSSSKRVSSRHTIGNRSSDVARTRRNEDIRWQDVGRRT | 645 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 18920267 | 18924801 | - | Lsi10G014820.1 | Lsi10g01482 | 673039 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi10g01482 | 645 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WNK4-RELATED | 13 | 629 | - | - | |
Lsi10g01482 | 645 | SMART | serkin_6 | 33 | 291 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi10g01482 | 645 | Pfam | Protein kinase domain | 36 | 291 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi10g01482 | 645 | SUPERFAMILY | Protein kinase-like (PK-like) | 35 | 292 | IPR011009 | - | |
Lsi10g01482 | 645 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 157 | 169 | IPR008271 | GO:0004672|GO:0006468 | |
Lsi10g01482 | 645 | CDD | STKc_WNK | 31 | 291 | - | - | |
Lsi10g01482 | 645 | ProSiteProfiles | Protein kinase domain profile. | 33 | 291 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi10g01482 | 645 | Gene3D | Transferase(Phosphotransferase) domain 1 | 116 | 295 | - | - | |
Lsi10g01482 | 645 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED | 13 | 629 | - | - | |
Lsi10g01482 | 645 | Gene3D | Phosphorylase Kinase; domain 1 | 17 | 114 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g01612 | Lsi-Chr1:14478314 | Lsi10g01482 | Lsi-Chr10:18920267 | 0 | dispersed | |
Lsi09g00148 | Lsi-Chr9:1497210 | Lsi10g01482 | Lsi-Chr10:18920267 | 1.27E-133 | dispersed | |
Lsi09g01322 | Lsi-Chr9:21071199 | Lsi10g01482 | Lsi-Chr10:18920267 | 1.29E-140 | dispersed | |
Lsi10g00058 | Lsi-Chr10:983975 | Lsi10g01482 | Lsi-Chr10:18920267 | 2.11E-109 | dispersed | |
Lsi10g01482 | Lsi-Chr10:18920267 | Lsi11g00467 | Lsi-Chr11:4910270 | 3.40E-149 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
83993 | PF00069 | Pkinase | 6.80E-47 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi10g01482 | K08867 | - | csv:101203757 | 1214.13 |