Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01482 ATGTTCAAGAATACTCGAGCTGGGAATCCCAGCAGCAACCTCCATGATTGCAACTCGGAATTTGGGTATGTTGAGACCGATCCGACATGTCGTTACGGCCGTTTTGAAGAAGTTTTGGGAAAAGGGGCCATGAAGACAGTGTACAAAGCCATTGATGAGTTTCTTGGAATAGAGGTGGCGTGGAGTCAGGTGAAACTCAACGAGGTCCTCCGATCGCCCGAGGATTTGCAGCGGCTGTATTCGGAGGTTCATCTACTTAGCACACTTAAGCACGAATCGATCATGCGATTCTACACGTCTTGGATCGATATTGATCGCAAAACCTTCAACTTCATTACTGAACTGTTTACTTCTGGAACACTCAGAGAATATGGAAAGAAATATAGACGAGTCGATAGCAGAGCCATTAAGAGCTGGGCACGCCAGATTCTGCAGGGACTCATTTACTTGCATGAACACGACCCTCCAATAATACACAGAGATCTGAAGTGCGATAATATCTTTGTGAATGGCCATCTTGGGCAAGTCAAGATTGGTGACTTGGGGCTTGCAGCTATACTCCATGGTTCCAGATCTGCTCACAGTGTTATAGGCACACCGGAGTTTATGGCGCCGGAATTATACGAGGAGAATTACAACGAGCTAGTTGATGTCTACTCGTTTGGCATGTGTGTTCTGGAGATGCTTACTTCTGAGTACCCATATAGCGAGTGTTCTAATCCTGCACAGATTTACAAGAAAGTCACGTCGGGGAAGCTGCCAGCAGCATTGTACAAGATTCAAGATGTGGATGCACAGAGATTTGTTAAGAAATGCTTGGTACCGGTTTCGATGAGGGCGTCAGCGAAGGAACTCTTGGCTGATCCTTTTCTCAAAATTGATGGAGATAGACCTTCGTTGAAGGAGAGGACTCAAAACCAGAAGCCATTTCTAAATGCCAAAGAGATGGAGAAATTGCACTTGGGTGAAGGTTTAAGCAGGACCAACATGACGATCACGGGGAAGCTGAACCCCGAAGACGATACCCTCTTTCTCAGAGTTCAGATTGCCGATAAAGAAGGCTCTCTTAGGAACATATATTTCCCCTTCGACATAGTTAACGACACAGCATTAGATGTGGCAATGGAGATGGTGAAAGAGTTGGAGATCTCTGATTGGGAGCCGTTCGAAATAGCGGACATGATTGAGGGAGAGATTTCGGCTTTGGTTCCGAACTGGAATAGAAGCGAGTTATCCAAGCATAGCCTCAGCTTCAGCTATGCAGAAGAAGATGATAATGCATCTCACCATACTTTCCGCTCGGTCTCATCGTCGTCCCAAGCAACAACTTTGGGTCTCATCACCTCCCCTAGAACAAACCAAAACATATCAAATGGTTTTAGTTGGTTCCCAGATGATGCGCTTGATGATAGCAGTTCACAGTGCTCATCGGCGTCAGGAAAATACTCCAACTTGAATTACATCAGCAGCGACGAGTACGAAACCAATATGAGTTCGGTCCAGATAGATCAACATAACAACATCAATAAGATTCACAATTCCTCAAGATTTTGTCCTGTTGAGAACCGCAAGAACAAGGATTTCTTGGCTGGACTTCTATACAAGCAGAGCCAATGTGCGATAGCAGGTTCTTCTCAAGGAGTTGCCTCGTGTCGCAAAGACAAGAGGGGAACGGATGGTCGTAAATTAACAAGGAACAGATCACTAGTAGATGTACATAGCCAATTGTTGCATCGTTCGTTAGTGGAGGAAGTGAATAGGAGACGATTATTCAAAACGGTTGGAGCGGTCGAAAGCATCGGGTTTCAAGCACCTTGTGAGGTTTCTTCCAGCAAAAGGGTCTCGAGTAGGCACACGATTGGGAACCGAAGTAGCGATGTAGCAAGAACGAGAAGAAACGAGGATATTAGGTGGCAAGATGTTGGAAGGAGAACATGA 1938 45.56 MFKNTRAGNPSSNLHDCNSEFGYVETDPTCRYGRFEEVLGKGAMKTVYKAIDEFLGIEVAWSQVKLNEVLRSPEDLQRLYSEVHLLSTLKHESIMRFYTSWIDIDRKTFNFITELFTSGTLREYGKKYRRVDSRAIKSWARQILQGLIYLHEHDPPIIHRDLKCDNIFVNGHLGQVKIGDLGLAAILHGSRSAHSVIGTPEFMAPELYEENYNELVDVYSFGMCVLEMLTSEYPYSECSNPAQIYKKVTSGKLPAALYKIQDVDAQRFVKKCLVPVSMRASAKELLADPFLKIDGDRPSLKERTQNQKPFLNAKEMEKLHLGEGLSRTNMTITGKLNPEDDTLFLRVQIADKEGSLRNIYFPFDIVNDTALDVAMEMVKELEISDWEPFEIADMIEGEISALVPNWNRSELSKHSLSFSYAEEDDNASHHTFRSVSSSSQATTLGLITSPRTNQNISNGFSWFPDDALDDSSSQCSSASGKYSNLNYISSDEYETNMSSVQIDQHNNINKIHNSSRFCPVENRKNKDFLAGLLYKQSQCAIAGSSQGVASCRKDKRGTDGRKLTRNRSLVDVHSQLLHRSLVEEVNRRRLFKTVGAVESIGFQAPCEVSSSKRVSSRHTIGNRSSDVARTRRNEDIRWQDVGRRT 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 18920267 18924801 - Lsi10G014820.1 Lsi10g01482 673039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01482 645 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK4-RELATED 13 629 - -
Lsi10g01482 645 SMART serkin_6 33 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g01482 645 Pfam Protein kinase domain 36 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g01482 645 SUPERFAMILY Protein kinase-like (PK-like) 35 292 IPR011009 -
Lsi10g01482 645 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672|GO:0006468
Lsi10g01482 645 CDD STKc_WNK 31 291 - -
Lsi10g01482 645 ProSiteProfiles Protein kinase domain profile. 33 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g01482 645 Gene3D Transferase(Phosphotransferase) domain 1 116 295 - -
Lsi10g01482 645 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 13 629 - -
Lsi10g01482 645 Gene3D Phosphorylase Kinase; domain 1 17 114 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01612 Lsi-Chr1:14478314 Lsi10g01482 Lsi-Chr10:18920267 0 dispersed
Lsi09g00148 Lsi-Chr9:1497210 Lsi10g01482 Lsi-Chr10:18920267 1.27E-133 dispersed
Lsi09g01322 Lsi-Chr9:21071199 Lsi10g01482 Lsi-Chr10:18920267 1.29E-140 dispersed
Lsi10g00058 Lsi-Chr10:983975 Lsi10g01482 Lsi-Chr10:18920267 2.11E-109 dispersed
Lsi10g01482 Lsi-Chr10:18920267 Lsi11g00467 Lsi-Chr11:4910270 3.40E-149 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83993 PF00069 Pkinase 6.80E-47 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01482 K08867 - csv:101203757 1214.13