Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01487 ATGGATCTCCTCCTCCTGGAGAAGACTCTCATCGGCCTCTTCCTCGCCGTCGTTCTCGCCATCGTCATTTCCAAGCTTCGCGGCAAGCGTTTCAAGCTTCCGCCAGGTCCCTTGCCGGTGCCGATCTTCGGAAACTGGCTCCAGGTCGGCGATGATTTGAACCACCGCAATCTCACAGATCTCGCCAAGAAATTCGGCGATATTTTCTTGCTTCGGATGGGACAGAGGAACCTCGTGGTGATTTCCTCGCCGGAATTAGCCAAGGAAGTGCTCCACACTCAGGGAGTCGAGTTCGGCTCTCGAACCAGAAACGTCGTCTTCGATATCTTCACCGGTAAAGGTCAGGATATGGTTTTCACCGTCTATGGCGAGCACTGGAGGAAAATGAGACGGATCATGACGGTTCCGTTTTTCACGAACAAAGTAGTCCAGCAATACCGTCAGGGATGGGAGGACGAAGCTCAAAGTGTGGTGGATGATGTGAAGAAGAATCCAGAATCGGCGACTGCTGGAGTCGTTCTCCGACGGCGGTTACAGCTTATGATGTACAATAACATGTACAGGATTATGTTCGATAGAAGATTCGAGAGTGAAGACGATCCTCTGTTTCACAAACTTAGGGCTCTGAACGGAGAGAGAAGCCGATTAGCGCAAAGCTTCGATTACAACTATGGCGATTTCATCCCGATCTTGAGGCCATTTTTGAGAGGATATCTCAAAATCTGCAAGGAAGTTAAGGAAACGAGGCTGAAACTCTTCAAGGATTACTTCGTCGAGGAGAGGAAGAAACTGGCGAATACAAAGAGCACGACGAACGAGGGATTGAAATGTGCGATTGATCATATATTGGATGCGCAACAGAAGGGAGAAATCAACGAAGACAATGTGCTCTACATTGTTGAGAATATCAATGTGGCAGCAATTGAAACAACATTATGGTCAATTGAATGGGGAATTGCTGAGCTAGTGAACCACCCAGAAATCCAAAGAAAGTTAAGGAATGAACTCGACACTGTCCTTGGACCTGGTGTTCCAATCACCGAGCCAGACACTCACAAGCTCCCTTACCTTCAAGCCGTGGTCAAGGAGACTCTCCGCCTTCGCATGGCCATCCCTTTACTCGTCCCCCACATGAACCTCCACGACGCCAAGCTCGGTGGCTATGACATTCCGGCCGAGAGCAAGATCCTAGTCAATGCCTGGTGGCTTGCCAACAACCCAGCCAACTGGAAGAACCCCGAAGAATTCCGCCCCGAGAGGTTCTTGGAGGAGGAATCCAAGGTTGAAGCCAATGGCAATGATTTCAGATACTTGCCTTTCGGCGTCGGGCGAAGAAGCTGCCCTGGAATCATCTTGGCTTTGCCAATTCTTGGCATTACAATTGGGCGTTTGGTTCAGAACTTTGAGCTGCTTCCTCCTCCTGGACAGTCTAAGTTGGATACTTCAGAGAAAGGTGGACAATTTAGCTTGCATATTTTGAAGCACTCTACCATTGTTGCTAAGCCAAGAGCGTTCTAA 1518 49.21 MDLLLLEKTLIGLFLAVVLAIVISKLRGKRFKLPPGPLPVPIFGNWLQVGDDLNHRNLTDLAKKFGDIFLLRMGQRNLVVISSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRQGWEDEAQSVVDDVKKNPESATAGVVLRRRLQLMMYNNMYRIMFDRRFESEDDPLFHKLRALNGERSRLAQSFDYNYGDFIPILRPFLRGYLKICKEVKETRLKLFKDYFVEERKKLANTKSTTNEGLKCAIDHILDAQQKGEINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQRKLRNELDTVLGPGVPITEPDTHKLPYLQAVVKETLRLRMAIPLLVPHMNLHDAKLGGYDIPAESKILVNAWWLANNPANWKNPEEFRPERFLEEESKVEANGNDFRYLPFGVGRRSCPGIILALPILGITIGRLVQNFELLPPPGQSKLDTSEKGGQFSLHILKHSTIVAKPRAF 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19009439 19013369 - Lsi10G014870.1 Lsi10g01487 673044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01487 505 PRINTS E-class P450 group I signature 315 341 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g01487 505 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g01487 505 PRINTS E-class P450 group I signature 295 312 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g01487 505 PRINTS E-class P450 group I signature 181 199 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g01487 505 PRINTS E-class P450 group I signature 86 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g01487 505 PRINTS E-class P450 group I signature 399 423 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g01487 505 PRINTS E-class P450 group I signature 358 376 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g01487 505 PRINTS E-class P450 group I signature 437 447 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g01487 505 PRINTS E-class P450 group I signature 447 470 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g01487 505 Gene3D Cytochrome P450 27 504 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g01487 505 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 1 505 - -
Lsi10g01487 505 SUPERFAMILY Cytochrome P450 34 503 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g01487 505 Pfam Cytochrome P450 34 495 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g01487 505 PRINTS P450 superfamily signature 306 323 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g01487 505 PRINTS P450 superfamily signature 359 370 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g01487 505 PRINTS P450 superfamily signature 438 447 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g01487 505 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 440 449 IPR017972 GO:0005506|GO:0016705
Lsi10g01487 505 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 1 505 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01206 Lsi-Chr2:15484851 Lsi10g01487 Lsi-Chr10:19009439 0 dispersed
Lsi10g01487 Lsi-Chr10:19009439 Lsi11g00815 Lsi-Chr11:10061167 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01487 K00487 - csv:101221846 977.237