Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01489 ATGGCTCGGCGACATTTCTGTTCAGCATCAGTGCTTTCTCTGTTTTTTGTTATTGTTAATCTACTTCACCTTGCAATTGCTGACCTGGAATCAGACAAGCAAGCTCTTCTTGACTTTGCATCTTCTGTTCCACATCGTCGGAGCCTCAACTGGAACGATACTACATCAGTATGCACATCTTGGGTTGGCATTACTTGCAGTGCAGATGGAACTCATGTGCTTACCCTCCGATTACCTGGCATTGGACTTGTGGGTTCAATTCCTTCTAACACTCTAGGGAAACTCGATGGCCTCAAGATTCTCAGTCTCCGTTCCAACCTTCTTAGTGGAAAAATCCCATCCGATATTACCTCACTTCCTTCTCTCCAATATCTTTATCTCCAACATAATAACTTCTCTGGTGATGTTCCTTCCTCCCTCTCACCTACTCTTAATGTATTGGATCTGTCATTCAATTTATTAGAAGGAAAGATTCCAAAGACCATACAAAATTTGACACAACTAACTGGATTGCATCTCCAGAATAACAATCTTTCTGGTTCTATACCAGATATCAACCTCCCTAAGCTCAAGCATTTCAATATAAGTTATAACCATCTTAATGGTTCTATTCCAACTTTTTTTAATACATTCCCAAATTCGTCCTTCATTGGAAATCCTTTATTATGTGGATCACCTCTAAAAGCTTGCTCCATTGTCCTATCTCCAGCTCCTAATGCTCCACCTTCACCTGCCATTTCTCAAAAGCAGAGCTCCAAAAAACTGAAGATGGGAGTTATCATTGCTATAGCAGTTGGTGGATTTTTCCTTCTATTCCTTGTAGTTCTTTTTGTGGTTTTGTGCTGTTTAAAGAAAAAGGGCGGTGGAGGTGCTGGCACAAGAAAGGCGAAGGTTTCTGGTGGTGGGAGAAGTGAAAAGCCAAAAGAGGAGTTTGGTAGTGGTGTGCAGGAGCCTGAGAAAAACAAGTTGGTGTTTTTTGAAGGCTGTTCATTTAATTTTGATCTTGAAGACCTATTAAGGGCTTCAGCTGAAGTGCTTGGAAAGGGCAGCTATGGAACAGCTTATAAAGCTGTTCTGGAGGAACCTACCACTGTTGTGGTTAAAAGGTTGAAGGAAGTGGTGGTGGGGAAGAGGGAATTTGAACAACAAATGGACATAGTGGGAAGGGTCGGGCAGCACCCGAATGTCATGCCACTCCGAGCATATTATTACTCAAAGGATGAAAAGCTCCTTGTTTATGATTATGTCCCTGGAGGCAGCTTGTCGTCACTCTTGCATGGAAACAGAGGAGGGGAAAGAACTCCACTTGACTGGGACTCAAGAGTGAAAATTGCTCTTGCAACAGCAAAGGGAATTGCTCATATTCATACAGTGGGTGGTCCAAAATTCACCCATGGAAATATCAAGGCCTCAAATGTCCTCCTAATTCAAGATGTCAATGCTTGTGTCTCTGACTTTGGCCTTACCCCTCTTATGAATGTCCCAACTTCTCGAACTGCAGGTTATCGTGCACCCGAGGTGATCGAAGCTCGCAAACACACACACAAGTCAGATGTTTACAGTTTTGGCGTTCTTCTTCTCGAAATGTTAACCGGAAAAGCTCCTCTCCAGTCACCTGGACGTGACGAAATGGTCGATCTTCCTCGGTGGGTCCAGTCGGTTGTGAGGGAGGAATGGACAGCTGAGGTTTTCGATGTTGAGCTAATGAGATACCAGAATATTGAAGAAGAGATGGTGCAGATGTTACAAATAGCAATGACTTGTGTAGCGAAGTTGCCCGACATGAGACCAAACATGGACGAAGTAGTTAGAATGATTGAAGAAATCCGGCAATCTGACTCGGAGAACCGGCCATCTTCCGAAGAGAACAAATCGAAGGACTCAAATATTCTCTGTCTTCACCACAGCTTCTCTTCTTCTACCTCCAAAATTGTGAAACCCTTCTTTGTCGATCTACCTCCCAAGTTTGTATTCGAGGAATTAATGGCTTCAAAACGTATTCTTAAAGAGCTCAAGGATTTACAGAAGGATCCTCCTACGTCTTGCAGCGCCGGTCCTGTGGCTGAAGACATGTTTCATTGGCAAGCAACTATCATGGGCCCTGCTGACTCTCCATATTCAGGAGGTGTATTCTTAGTTTCTATTCATTTCCCTCCGGACTACCCTTTCAAGCCTCCGAAGGTGGCTTTTAGGACTAAGGTGTTCCACCCAAACATTAATAGCAACGGAAGCATATGTCTGGACATTCTTAAAGAACAGTGGAGCCCTGCGCTAACTATTTCTAAGGTGCTGCTGTCCATATGCTCTCTGTTAACTGATCCCAACCCCGACGATCCTCTTGTTCCCGAAATTGCTCACATGTACAAGACTGATAGAGCCAAATCTAACATGGCTGTGGAAGACATGGCTTCTTTGCCGGAGCACAGAACCAACTGCCGCCGGAAACAGCTAACTGCCGGGGACTCTACAAAATTTAAGCAAAAGCTTGTTAGGATCATCGTAACCGACGCCGACGCCACTGATTCTTCTAGTGAAGATGAATTGATTTTGGGATCAAGAACGGCAATTAGGAGACAAGTAAGAGAAATCACTATTAATCGTTACTCTGTTCTTGATGGTTCTTCAGCAAAATCCCCTGTTTCGGAGATTTGCAAGAAGCGGAACTCTAGATCACGGAGGTCTAATAAATCATCTCGCCGGAAGAAGTTCAGAGGAGTCCGGCAGAGGCCGTGGGGACGGTGGGCGGCGGAAATCCGAGATCCGAATCGCCGGAAACGGATTTGGCTCGGAACCTTCGATACTGCGGAAGAGGCAGCGGCGGTTTACGACCGAGCTGCTGTGAAACTCCAGGGTCCAAACGCTACAACGAACTTCTCTAGCGACGGAGCAGTTACAACGGCGGCCGACGGCGGTAGCAAGCAGGAGGACGGCTTAGAATCGTGGAAAACGACGGCGGCTTGGTCGCCGGCTTCAGTGCTCCATTACGACAGCGTTTTAACTCCGATTGAGGAGATGCTGTATTGTGGAGAGGTTGATGAGTTCGGATTCGCCATGGCTCCGGCGAGCTTACCGGCGGCGAGAAGGCAGTGCGGCGGCGAAGAAGATTTCGGGGAGTTGGAGCTGGACTTGGACTATTTCTTGGTCGACGTCATTTACTAA 3159 45.9 MARRHFCSASVLSLFFVIVNLLHLAIADLESDKQALLDFASSVPHRRSLNWNDTTSVCTSWVGITCSADGTHVLTLRLPGIGLVGSIPSNTLGKLDGLKILSLRSNLLSGKIPSDITSLPSLQYLYLQHNNFSGDVPSSLSPTLNVLDLSFNLLEGKIPKTIQNLTQLTGLHLQNNNLSGSIPDINLPKLKHFNISYNHLNGSIPTFFNTFPNSSFIGNPLLCGSPLKACSIVLSPAPNAPPSPAISQKQSSKKLKMGVIIAIAVGGFFLLFLVVLFVVLCCLKKKGGGGAGTRKAKVSGGGRSEKPKEEFGSGVQEPEKNKLVFFEGCSFNFDLEDLLRASAEVLGKGSYGTAYKAVLEEPTTVVVKRLKEVVVGKREFEQQMDIVGRVGQHPNVMPLRAYYYSKDEKLLVYDYVPGGSLSSLLHGNRGGERTPLDWDSRVKIALATAKGIAHIHTVGGPKFTHGNIKASNVLLIQDVNACVSDFGLTPLMNVPTSRTAGYRAPEVIEARKHTHKSDVYSFGVLLLEMLTGKAPLQSPGRDEMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIAMTCVAKLPDMRPNMDEVVRMIEEIRQSDSENRPSSEENKSKDSNILCLHHSFSSSTSKIVKPFFVDLPPKFVFEELMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYSGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKSNMAVEDMASLPEHRTNCRRKQLTAGDSTKFKQKLVRIIVTDADATDSSSEDELILGSRTAIRRQVREITINRYSVLDGSSAKSPVSEICKKRNSRSRRSNKSSRRKKFRGVRQRPWGRWAAEIRDPNRRKRIWLGTFDTAEEAAAVYDRAAVKLQGPNATTNFSSDGAVTTAADGGSKQEDGLESWKTTAAWSPASVLHYDSVLTPIEEMLYCGEVDEFGFAMAPASLPAARRQCGGEEDFGELELDLDYFLVDVIY 1052
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19061529 19076530 + Lsi10G014890.1 Lsi10g01489 673046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01489 1052 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 735 750 IPR023313 -
Lsi10g01489 1052 MobiDBLite consensus disorder prediction 879 907 - -
Lsi10g01489 1052 SUPERFAMILY L domain-like 42 228 - -
Lsi10g01489 1052 PRINTS Ethylene responsive element binding protein signature 903 914 IPR001471 GO:0003700|GO:0006355
Lsi10g01489 1052 PRINTS Ethylene responsive element binding protein signature 925 941 IPR001471 GO:0003700|GO:0006355
Lsi10g01489 1052 Gene3D Transferase(Phosphotransferase) domain 1 416 634 - -
Lsi10g01489 1052 MobiDBLite consensus disorder prediction 889 907 - -
Lsi10g01489 1052 CDD STKc_IRAK 346 609 - -
Lsi10g01489 1052 SMART ubc_7 665 808 - -
Lsi10g01489 1052 SMART rav1_2 902 965 IPR001471 GO:0003700|GO:0006355
Lsi10g01489 1052 ProSiteProfiles Protein kinase domain profile. 340 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g01489 1052 Pfam Leucine rich repeat N-terminal domain 30 67 IPR013210 -
Lsi10g01489 1052 MobiDBLite consensus disorder prediction 299 313 - -
Lsi10g01489 1052 Pfam Protein kinase domain 343 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g01489 1052 SUPERFAMILY DNA-binding domain 902 959 IPR016177 GO:0003677
Lsi10g01489 1052 ProSitePatterns Protein kinases ATP-binding region signature. 346 377 IPR017441 GO:0005524
Lsi10g01489 1052 Pfam AP2 domain 902 951 IPR001471 GO:0003700|GO:0006355
Lsi10g01489 1052 Gene3D Ubiquitin Conjugating Enzyme 658 803 IPR016135 -
Lsi10g01489 1052 Gene3D Ribonuclease Inhibitor 186 231 IPR032675 -
Lsi10g01489 1052 SUPERFAMILY Protein kinase-like (PK-like) 344 607 IPR011009 -
Lsi10g01489 1052 PANTHER LRR RECEPTOR-LIKE KINASE 9 630 - -
Lsi10g01489 1052 PANTHER OS05G0588300 PROTEIN 9 630 - -
Lsi10g01489 1052 MobiDBLite consensus disorder prediction 287 313 - -
Lsi10g01489 1052 CDD AP2 903 958 IPR001471 GO:0003700|GO:0006355
Lsi10g01489 1052 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 662 808 IPR000608 -
Lsi10g01489 1052 ProSiteProfiles AP2/ERF domain profile. 902 959 IPR001471 GO:0003700|GO:0006355
Lsi10g01489 1052 Gene3D AP2/ERF domain 901 960 IPR036955 GO:0003700|GO:0006355
Lsi10g01489 1052 SUPERFAMILY UBC-like 661 795 IPR016135 -
Lsi10g01489 1052 Gene3D Ribonuclease Inhibitor 29 185 IPR032675 -
Lsi10g01489 1052 Gene3D Phosphorylase Kinase; domain 1 308 415 - -
Lsi10g01489 1052 CDD UBCc 664 796 IPR000608 -
Lsi10g01489 1052 Pfam Leucine rich repeat 86 132 IPR001611 GO:0005515
Lsi10g01489 1052 Pfam Ubiquitin-conjugating enzyme 666 799 IPR000608 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01628 Lsi-Chr1:14646194 Lsi10g01489 Lsi-Chr10:19061529 0 dispersed
Lsi05g01167 Lsi-Chr5:19606720 Lsi10g01489 Lsi-Chr10:19061529 3.02E-88 dispersed
Lsi05g01168 Lsi-Chr5:19611775 Lsi10g01489 Lsi-Chr10:19061529 0 dispersed
Lsi06g00909 Lsi-Chr6:18797364 Lsi10g01489 Lsi-Chr10:19061529 0 dispersed
Lsi07g00639 Lsi-Chr7:6817895 Lsi10g01489 Lsi-Chr10:19061529 8.61E-14 dispersed
Lsi07g00875 Lsi-Chr7:9944412 Lsi10g01489 Lsi-Chr10:19061529 6.10E-35 dispersed
Lsi09g00043 Lsi-Chr9:389415 Lsi10g01489 Lsi-Chr10:19061529 7.08E-88 dispersed
Lsi09g00192 Lsi-Chr9:1984864 Lsi10g01489 Lsi-Chr10:19061529 2.46E-33 dispersed
Lsi09g00193 Lsi-Chr9:2006813 Lsi10g01489 Lsi-Chr10:19061529 1.55E-88 dispersed
Lsi09g00194 Lsi-Chr9:2018164 Lsi10g01489 Lsi-Chr10:19061529 0 dispersed
Lsi10g01075 Lsi-Chr10:15018604 Lsi10g01489 Lsi-Chr10:19061529 1.62E-26 dispersed
Lsi11g01197 Lsi-Chr11:20474248 Lsi10g01489 Lsi-Chr10:19061529 3.81E-49 dispersed
Lsi10g01489 Lsi-Chr10:19061529 Lsi11g00286 Lsi-Chr11:2954323 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26100 PF00069 Pkinase 4.80E-36 CL0016 Lsi TF
83994 PF00069 Pkinase 4.80E-36 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01489 - - csv:101221378 1135.55