Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01509 ATGTTCCATGCCACCAAGAAACCTTCCTCTATGACTTCTCATGACAGGCCAATGTGTGTCCAAGGCGATTCCGGTCTCGTCCTCACCACCGACCCCAAACCCCGTCTCCGTTGGACCGTCGAGCTCCACGAGCGCTTCGTCGACGCCGTCACTCAACTCGGTGGCCCCGATAAAGCCACCCCGAAAACCATCATGAGGGTTATGGGCGTCAAGGGTCTCACTCTCTACCATCTCAAAAGTCACCTCCAGAAGTTCAGACTTGGAAAGCAACCCCACAAGGAATTCAATGATCAATCAATAAAGGATGGTATAAGAGCTTCAGCCTTGGAACTTCAGAGAAACAGTGGATCTTCTTCCAGCTTAATGGACCGTATTTATGTGCCTAATTTCAAATATTTAAATTTAATTTATTTGAGAATTGAGGCTCAAGGCAAGTACATGCAAAGCATATTAGAGAAAGCTTGCCAAACCCTAGCCGGTGAGAACATGGCCGCCGCTGGGCCTTTCAAAACCACTTCCAACAATATGGGAGCAACCACCAATAATCTTGTCTCAGACACCGCCATCAAAGACTTCATTTCACCTCCTCCACCTCACCACACCTTCCCTCCTTTTCAAGACATGAACAACCTATTTAACTCCGAACCGCCGCCACCTCCGCCGCCTCTCATTGACTGCCTCAAGAAGCCCAGCCCCTTCATCTCCGGCGCCGGTAAGACCCCCATTTTCTGGCCGGACGATCTCCGGCTCCAAGACTTAGGAACCCCTTCAGCCACCTTAGCACCGCCACCACCTTCGATCGGTGGCCCACCCGACTTGGACACCCTCCAATTGGAAACGTACGAATCCAAACCGCCACCGCCACCGCCGCTACTAGCTGTTGGCAACAACACAATGAATGAGAAGAAGTTCGACATGACGTTAAAGCTCGAGAGGTCGTCCCCACCACGGTCGGGACAATCTGACGAAAGGGTTAATAATAATGGTATGCCTAACAATAGCAACTCTACAATGTCACAGCCACAGGGAAGAAATTCTTCATTTGGTTAA 1050 50.29 MFHATKKPSSMTSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDQSIKDGIRASALELQRNSGSSSSLMDRIYVPNFKYLNLIYLRIEAQGKYMQSILEKACQTLAGENMAAAGPFKTTSNNMGATTNNLVSDTAIKDFISPPPPHHTFPPFQDMNNLFNSEPPPPPPPLIDCLKKPSPFISGAGKTPIFWPDDLRLQDLGTPSATLAPPPPSIGGPPDLDTLQLETYESKPPPPPPLLAVGNNTMNEKKFDMTLKLERSSPPRSGQSDERVNNNGMPNNSNSTMSQPQGRNSSFG 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19348345 19352347 - Lsi10G015090.1 Lsi10g01509 673066

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01509 349 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 138 214 - -
Lsi10g01509 349 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 33 88 IPR006447 GO:0003677
Lsi10g01509 349 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 1 124 - -
Lsi10g01509 349 SUPERFAMILY Homeodomain-like 32 88 IPR009057 -
Lsi10g01509 349 MobiDBLite consensus disorder prediction 1 26 - -
Lsi10g01509 349 MobiDBLite consensus disorder prediction 238 349 - -
Lsi10g01509 349 MobiDBLite consensus disorder prediction 313 349 - -
Lsi10g01509 349 Gene3D - 32 90 - -
Lsi10g01509 349 MobiDBLite consensus disorder prediction 1 17 - -
Lsi10g01509 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 90 IPR017930 -
Lsi10g01509 349 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 138 214 IPR044848 GO:0003700
Lsi10g01509 349 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 1 124 IPR044848 GO:0003700
Lsi10g01509 349 Pfam Myb-like DNA-binding domain 36 84 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01509 - - - csv:101203721 577.015
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01838 Lsi-Chr5:25663614 Lsi10g01509 Lsi-Chr10:19348345 7.20E-46 dispersed
Lsi10g01509 Lsi-Chr10:19348345 Lsi05g01046 Lsi-Chr5:17974512 1.80E-16 dispersed
Lsi01g01999 Lsi-Chr1:26783102 Lsi10g01509 Lsi-Chr10:19348345 8.55E-20 transposed
Lsi03g01675 Lsi-Chr3:27944519 Lsi10g01509 Lsi-Chr10:19348345 7.78E-10 transposed
Lsi11g01062 Lsi-Chr11:18452240 Lsi10g01509 Lsi-Chr10:19348345 4.35E-09 transposed
Lsi10g01509 Lsi-Chr10:19348345 Lsi11g01586 Lsi-Chr11:24259033 6.45E-99 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi05g01838 . 7 266 G2-like Transcription Factor Family AT3G24120 58.1 8.2e-68 254.2
Lsi11g01586 . 16 173 G2-like Transcription Factor Family AT3G24120 63.0 4.1e-43 172.2
Lsi10g01509 . 22 167 G2-like Transcription Factor Family AT3G24120 56.6 3.4e-37 152.5
Lsi01g00519 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.4e-37 152.5
Lsi04g00286 . 19 257 G2-like Transcription Factor Family AT1G25550 54.9 6.3e-54 208.0
Lsi08g00393 . 20 258 G2-like Transcription Factor Family AT1G25550 54.1 3.8e-51 198.7
Lsi02g01341 . 1 269 G2-like Transcription Factor Family AT3G46640 52.2 1.5e-62 236.9
Lsi03g01637 . 1 286 G2-like Transcription Factor Family AT5G05090 55.6 7.9e-70 260.8
Lsi05g01838 . 7 314 G2-like Transcription Factor Family AT4G13640 53.6 6.1e-55 211.5
Lsi05g01838 . 7 266 G2-like Transcription Factor Family AT3G24120 58.1 8.2e-68 254.2
Lsi11g01586 . 16 173 G2-like Transcription Factor Family AT3G24120 63.0 4.1e-43 172.2
Lsi10g01509 . 22 167 G2-like Transcription Factor Family AT3G24120 56.6 3.4e-37 152.5
Lsi01g00519 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.4e-37 152.5
Lsi11g01586 . 1 387 G2-like Transcription Factor Family AT1G79430 52.6 2.1e-81 299.7
Lsi10g01509 . 1 166 G2-like Transcription Factor Family AT1G79430 71.0 3.1e-61 232.6
Lsi03g01290 . 70 292 G2-like Transcription Factor Family AT5G18240 53.3 6.4e-50 194.9
Lsi01g00520 . 84 343 G2-like Transcription Factor Family AT2G01060 56.8 2.5e-51 199.1
Lsi03g01637 . 1 286 G2-like Transcription Factor Family AT3G10760 56.9 5.6e-81 298.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001069 3 4 3 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 1 6 5 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26103 PF00249 Myb_DNA-binding 1.90E-06 CL0123 Lsi TF