Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01509 ATGTTCCATGCCACCAAGAAACCTTCCTCTATGACTTCTCATGACAGGCCAATGTGTGTCCAAGGCGATTCCGGTCTCGTCCTCACCACCGACCCCAAACCCCGTCTCCGTTGGACCGTCGAGCTCCACGAGCGCTTCGTCGACGCCGTCACTCAACTCGGTGGCCCCGATAAAGCCACCCCGAAAACCATCATGAGGGTTATGGGCGTCAAGGGTCTCACTCTCTACCATCTCAAAAGTCACCTCCAGAAGTTCAGACTTGGAAAGCAACCCCACAAGGAATTCAATGATCAATCAATAAAGGATGGTATAAGAGCTTCAGCCTTGGAACTTCAGAGAAACAGTGGATCTTCTTCCAGCTTAATGGACCGTATTTATGTGCCTAATTTCAAATATTTAAATTTAATTTATTTGAGAATTGAGGCTCAAGGCAAGTACATGCAAAGCATATTAGAGAAAGCTTGCCAAACCCTAGCCGGTGAGAACATGGCCGCCGCTGGGCCTTTCAAAACCACTTCCAACAATATGGGAGCAACCACCAATAATCTTGTCTCAGACACCGCCATCAAAGACTTCATTTCACCTCCTCCACCTCACCACACCTTCCCTCCTTTTCAAGACATGAACAACCTATTTAACTCCGAACCGCCGCCACCTCCGCCGCCTCTCATTGACTGCCTCAAGAAGCCCAGCCCCTTCATCTCCGGCGCCGGTAAGACCCCCATTTTCTGGCCGGACGATCTCCGGCTCCAAGACTTAGGAACCCCTTCAGCCACCTTAGCACCGCCACCACCTTCGATCGGTGGCCCACCCGACTTGGACACCCTCCAATTGGAAACGTACGAATCCAAACCGCCACCGCCACCGCCGCTACTAGCTGTTGGCAACAACACAATGAATGAGAAGAAGTTCGACATGACGTTAAAGCTCGAGAGGTCGTCCCCACCACGGTCGGGACAATCTGACGAAAGGGTTAATAATAATGGTATGCCTAACAATAGCAACTCTACAATGTCACAGCCACAGGGAAGAAATTCTTCATTTGGTTAA 1050 50.29 MFHATKKPSSMTSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDQSIKDGIRASALELQRNSGSSSSLMDRIYVPNFKYLNLIYLRIEAQGKYMQSILEKACQTLAGENMAAAGPFKTTSNNMGATTNNLVSDTAIKDFISPPPPHHTFPPFQDMNNLFNSEPPPPPPPLIDCLKKPSPFISGAGKTPIFWPDDLRLQDLGTPSATLAPPPPSIGGPPDLDTLQLETYESKPPPPPPLLAVGNNTMNEKKFDMTLKLERSSPPRSGQSDERVNNNGMPNNSNSTMSQPQGRNSSFG 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19348345 19352347 - Lsi10G015090.1 Lsi10g01509 673066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01509 349 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 138 214 - -
Lsi10g01509 349 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 33 88 IPR006447 GO:0003677
Lsi10g01509 349 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 1 124 - -
Lsi10g01509 349 SUPERFAMILY Homeodomain-like 32 88 IPR009057 -
Lsi10g01509 349 MobiDBLite consensus disorder prediction 1 26 - -
Lsi10g01509 349 MobiDBLite consensus disorder prediction 238 349 - -
Lsi10g01509 349 MobiDBLite consensus disorder prediction 313 349 - -
Lsi10g01509 349 Gene3D - 32 90 - -
Lsi10g01509 349 MobiDBLite consensus disorder prediction 1 17 - -
Lsi10g01509 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 90 IPR017930 -
Lsi10g01509 349 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 138 214 IPR044848 GO:0003700
Lsi10g01509 349 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 1 124 IPR044848 GO:0003700
Lsi10g01509 349 Pfam Myb-like DNA-binding domain 36 84 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01838 Lsi-Chr5:25663614 Lsi10g01509 Lsi-Chr10:19348345 7.20E-46 dispersed
Lsi10g01509 Lsi-Chr10:19348345 Lsi05g01046 Lsi-Chr5:17974512 1.80E-16 dispersed
Lsi01g01999 Lsi-Chr1:26783102 Lsi10g01509 Lsi-Chr10:19348345 8.55E-20 transposed
Lsi03g01675 Lsi-Chr3:27944519 Lsi10g01509 Lsi-Chr10:19348345 7.78E-10 transposed
Lsi11g01062 Lsi-Chr11:18452240 Lsi10g01509 Lsi-Chr10:19348345 4.35E-09 transposed
Lsi10g01509 Lsi-Chr10:19348345 Lsi11g01586 Lsi-Chr11:24259033 6.45E-99 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26103 PF00249 Myb_DNA-binding 1.90E-06 CL0123 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01509 - - csv:101203721 577.015