Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01510 ATGATTATGACGGTCGCTGCAAGAGCAATCGCAACAGCTCGATCAATGGCGCGATCGAGCAGACTTCCTCTTCTATCTCCAGTTTCTTATGTATTCGCTGCGCAGAAATCTCACTCCCACACTCTTCTCATTCGTCAGAGCATCGCTACTCGTCTTCACAGTTCTGGATTGTTACGAAGCCAAGGCCTCATTGGAGGGAAGTGGATTGATGCTTATGATGGGAAGACCATTAAGGTTCACAATCCAGCTAATGGTGAAGTTATAACCAACGTCCCGCTCATGGGCAAAAGGGAGACCGATGATGCTATTTCTTCAGCTTATGATGCTTTTAAGACTTGGAGCAAGCTCACTGCAGCTGATCGGAGTAATCGCTTACGCAAATGGTATGAGCTCCTAATTGCCCACAAAGAAGAGATTGGACAACTGATAACCTTAGAGCAAGGAAAACCCTTAAAGGAAGCTGTGGGTGAGACTAACTATGGAGCCAGCTTTATTGAGTTCTATTCCGAGGAAGCAAAACGGATATATGGTGACATAATCTCACCAACTATAGCCGATCGTCGAATTTTGGTCTTGAAGCAGCCAGTTGGAGTTGTTGGTGTTGTTACCCCTTGGAACTTTCCGTTGGCTATGATTACGCGGAAGGTTGGACCTGCTCTTGCATGTGGTTGTACGGTGGTCATAAAACCCGCTGAGCTTACCCCCTTGACAGCTTTAGCAGCAGCTGAGCTCTCACTTCAAGCTGGAATTCCCCCAGGTGTCGTGAATGTGGTTATGGGAGATGCTCCTGCTATTGGGGATGCTATACTTGCAAGTTCTCAGGTAAGAAAGATCACGTTTACTGGCTCAACAGCAGTTGGAAAAAAGTTGATGGCAGGAGCTGCTGGAACTGTTAAAAGGGTGTCCTTTGAACTTGGTGGTAATGCCCCTTGCATAGTATTTGATGACGCGGATGTGGATGTTGCAGTAAAAGGAGCTATTGCAGCAAAGTTCCGAAATAGTGGTCAGACTTGTGTTTGTGCCAATAGAATTCTTGTTCAAGAAGGAATATACGAGAAATTTACAAATGCTTTCTCAAAAGCCGTGCAAAATCTGCAAGTTGGCGATGGGTTTGGTGAAGGTGTAGCTCAGGGTCCTTTAATTAATGAAGCTGCCGTGCAGAAGGTTGAGAAATTTCTTCAAGATGCCACCACAAAGGGAGCAAAAGTTCTTCTTGGTGGTAAAAGACACAGCCTTGGGATGACATTTTTTGAGCCTACAGTTATTGCGGACGTGAAGAGTGACATGCTTGTATCCAGGCACTGGGCTCTCCTTCGATCCTATGCCCAATTGTGCTTCATAGTTCATGGCTTTATTATCTTTGAACTGGCTCTATTTTACATCAGGGAGGAAGTATTTGGTCCTGTGGCACCCTTACTGCTATTCAGAACAGAGGAGGAAGCAATTGCTCTCGCTAATGACACCAATGCAGGATTAGCTGCTTACATATTCACAAATAATATTCAACGTTCATGGAGAGTGACTGAAGCTCTTGAATATGGAATGGTTGGTGTTAATGAAGGCCTAATTTCTACAGAGTTTCCTTTTGAGTTGGAGCTCCTTGTGGTATATAGTGGGTGGTCCGAAGTAAATATGACCTTTCTTCTTGGTGTGGGTGATGGTCCCTCCCTTGAGTTTTGGAAAGAAAGGGGATGGGTTTCTCTGACTTTCACCAATCACCACCTTCCTAAGTACGCTCTTTGCTGTCTGTGA 1752 45.09 MIMTVAARAIATARSMARSSRLPLLSPVSYVFAAQKSHSHTLLIRQSIATRLHSSGLLRSQGLIGGKWIDAYDGKTIKVHNPANGEVITNVPLMGKRETDDAISSAYDAFKTWSKLTAADRSNRLRKWYELLIAHKEEIGQLITLEQGKPLKEAVGETNYGASFIEFYSEEAKRIYGDIISPTIADRRILVLKQPVGVVGVVTPWNFPLAMITRKVGPALACGCTVVIKPAELTPLTALAAAELSLQAGIPPGVVNVVMGDAPAIGDAILASSQVRKITFTGSTAVGKKLMAGAAGTVKRVSFELGGNAPCIVFDDADVDVAVKGAIAAKFRNSGQTCVCANRILVQEGIYEKFTNAFSKAVQNLQVGDGFGEGVAQGPLINEAAVQKVEKFLQDATTKGAKVLLGGKRHSLGMTFFEPTVIADVKSDMLVSRHWALLRSYAQLCFIVHGFIIFELALFYIREEVFGPVAPLLLFRTEEEAIALANDTNAGLAAYIFTNNIQRSWRVTEALEYGMVGVNEGLISTEFPFELELLVVYSGWSEVNMTFLLGVGDGPSLEFWKERGWVSLTFTNHHLPKYALCCL 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19367032 19378842 - Lsi10G015100.1 Lsi10g01510 673067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01510 583 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 303 310 IPR029510 GO:0016491
Lsi10g01510 583 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 307 433 IPR016163 GO:0016620
Lsi10g01510 583 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 459 525 IPR016163 GO:0016620
Lsi10g01510 583 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 55 526 - -
Lsi10g01510 583 CDD ALDH_F5_SSADH_GabD 79 529 - -
Lsi10g01510 583 SUPERFAMILY ALDH-like 460 523 IPR016161 GO:0016491
Lsi10g01510 583 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 331 342 IPR016160 GO:0016491
Lsi10g01510 583 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 55 526 - -
Lsi10g01510 583 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 74 306 IPR016162 GO:0016491
Lsi10g01510 583 SUPERFAMILY ALDH-like 39 431 IPR016161 GO:0016491
Lsi10g01510 583 Pfam Aldehyde dehydrogenase family 461 523 IPR015590 GO:0016491
Lsi10g01510 583 Pfam Aldehyde dehydrogenase family 68 432 IPR015590 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00690 Lsi-Chr3:8949576 Lsi10g01510 Lsi-Chr10:19367032 5.35E-48 dispersed
Lsi10g01510 Lsi-Chr10:19367032 Lsi11g00444 Lsi-Chr11:4619163 5.94E-71 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01510 K17761 - csv:101217352 847.81