Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01525 ATGAAGGAGATCAGTGGAAGAAAACAAGGCACATCTCTTTCACCATGTGCAGCTTGTAAGCTTCTCCGTCGTCGATGTGCTCAAGATTGCGTTTTCGCCCCTTATTTCCCCGCCGACGAGCCTCATAAATTTGCTAGCGTTCATAAGGTCTTCGGAGCTAGTAATGTTAACAAGATGTTGCAGGTTATCAGCTCGATGGTGTACGAGGCAAACGCAAGGGTACGAGATCCAGTATACGGCTGCGTTGGAGCCATATCATCGCTACAACAACAAATCGATCTCTTGCAAACACAATTGGCAATAGCACAGGCGGAGGTGGTTCACATGCGGATGCGCCAATTCCCGTCATCCTCCTGCAACCCAATCGCTGGCCACTCGCCGGAAACCGCCTCACCCTCCGGCAAGATGAACATTCCGGCTCCAAACAAGTCCTATTTTTCTATGGACATGGTTGACCACGACAACATGGGGGAGTCCTTGTGGTCGTCGTGCTAG 495 50.71 MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQVISSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRQFPSSSCNPIAGHSPETASPSGKMNIPAPNKSYFSMDMVDHDNMGESLWSSC 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19619135 19621541 - Lsi10G015250.1 Lsi10g01525 673082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01525 164 Coils Coil 85 105 - -
Lsi10g01525 164 ProSiteProfiles LOB domain profile. 14 106 IPR004883 -
Lsi10g01525 164 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 3 160 - -
Lsi10g01525 164 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 160 - -
Lsi10g01525 164 Pfam Lateral organ boundaries (LOB) domain 15 103 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01066 Lsi-Chr4:12673905 Lsi10g01525 Lsi-Chr10:19619135 5.06E-50 dispersed
Lsi10g01458 Lsi-Chr10:18689456 Lsi10g01525 Lsi-Chr10:19619135 4.00E-47 dispersed
Lsi10g01525 Lsi-Chr10:19619135 Lsi03g00275 Lsi-Chr3:3380756 5.80E-41 dispersed
Lsi02g01015 Lsi-Chr2:10457656 Lsi10g01525 Lsi-Chr10:19619135 2.23E-71 transposed
Lsi08g01584 Lsi-Chr8:23868870 Lsi10g01525 Lsi-Chr10:19619135 2.86E-22 transposed
Lsi10g01525 Lsi-Chr10:19619135 Lsi11g01618 Lsi-Chr11:24517061 4.91E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26105 PF03195 LOB 5.90E-34 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01525 - - csv:101220394 293.508