Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01531 ATGGTGAAGTTTACAGTTGAAGAGCTTCGTAGGATTATGGACTACAAGCATAACATTCGTAATATGTCTGTTATTGCTCATGTCGATCACGGGAAGTCCACTCTTACAGATTCTCTTGTGGCTGCTGCCGGTATCATTGCTCAAGAAGTTGCGGGTGATGTTCGGATGACAGATACTCGTCAAGATGAGGCAGAACGGGGCATTACCATCAAATCAACTGGCATCTCACTCTATTATGAGATGTCTGATGAATCATTGAAAAGTTATAAAGGACAGAGGCAGGGAAATGAGTACCTTATCAATCTTATCGATTCACCTGGGCACGTCGACTTCTCGTCTGAGGTTACAGCTGCTCTACGAATTACTGATGGTGCCCTTGTAGTGGTGGATTGTGTTGAAGGAGTTTGTGTCCAAACAGAGACGGTGCTTCGTCAGGCATTGGGAGAGAGGATTCGTCCTGTGTTGACAGTTAACAAGATGGACAGGTGCTTCCTTGAGCTTCAAGTAGATGGGGAAGAGGCTTATCAGACCTTCTCGAGAGTTATTGAGAATGCTAATGTGATCATGGCTACATATGAGGATCCACTTCTTGGTGATGTCCAAGTGTATCCAGAGAAGGGAACAGTTGCTTTCTCTGCTGGTTTGCACGGTTGGGCTTTCACCCTGACTAACTTCGCAAAGATGTATGCCTCTAAATTTGGAGTAGATGAGGCTAAGATGATGGAGAGGCTTTGGGGTGAGAACTTCTTTGACCCTGCCACCAAGAAATGGACCACCAAGAACACTGGCTCTGCAACGTGCAAGCGTGGATTTGTTCAGTTCTGCTATGAACCTATCAAGCAGATTATTTCAACTTGTATGAATGACCAGAAGGACAAGCTATGGCCTATGTTGCAGAAACTTGGAGTTGTCATGAAGTCTGAAGAAAAGGATCTGATGGGAAAAGCATTGATGAAGCGAGTAATGCAGACGTGGCTCCCAGCAAGCAATGCTCTTTTGGAAATGATGATCTTTCATCTCCCTTCCCCTGCCACGGCCCAAAAGTATCGTGTGGAGAATTTGTACGAGGGTCCACTAGATGATGTGTACGCTAGTGCCATCAGAAGTTGTGACCCTGAGGGACCTCTTATGCTTTATGTATCAAAGATGATTCCTGCATCAGACAAGGGCAGGTTCTTTGCTTTCGGTCGTGTGTTTTCTGGGAAGGTTTCAACTGGTTTGAAAGTTAGAATCATGGGTCCCAACTATGTTCCTGGTGAGAAGAAAGACTTGTATGTTAAGAGCGTCCAGAGAACTGTCATTTGGATGGGAAAGAAGCAAGAAACAGTGGAGGATGTGCCTTGTGGTAATACTGTTGCCATGGTTGGGTTGGATCAATATATCACAAAGAATGCCACTCTGACAAACGAGAAGGAAGTTGATGCTCATCCAATTCGAGCCATGAAATTTTCTGTATCTCCTGTTGTGCGTGTGGCTGTTCAGTGCAAGGTGGCATCTGATCTTCCCAAGCTTGTGGAAGGGCTTAAACGTCTGGCGAAGTCTGACCCTATGGTTGTGTGTACCATGGAGGAATCTGGTGAGCACATTGTTGCCGGTGCTGGAGAACTACATCTTGAGATCTGTCTGAAGGATTTGCAAGAGGATTTCATGGGTGGAGCTGAGATCATAAAATCTGACCCAGTTGTCTCTTTCCGTGAAACCGTTCTTGAGAGGTCATGCCGCACAGTGATGAGTAAATCCCCCAACAAACACAATCGTCTATACATGGAAGCACGACCCATGGAGGAAGGACTGGCAGAGGCTATCGATGATGGCCGTATTGGACCACGAGATGATCCTAAAGTTCGTTCTAAAATTTTGTCGGAGGAATTCGGTTGGGACAAAGATCTTGCCAAGAAGATTTGGTGCTTTGGTCCTGAGACAACTGGCCCCAACATGGTGGTTGATATGTGTAAGGGAGTTCAATATCTGAATGAAATCAAGGATTCTGTCGTTGCCGGTTTCCAATGGGCGTCGAAAGAAGGTGCATTGGCCGAAGAAAACATGAGAGGCATCTGTTTTGAAGTTTGTGATGTCGTTCTTCACGCTGATGCCATCCACAGAGGAGGAGGTCAAGTCATTCCCACAGCTAGGAGGGTAATTTACGCTTCTCAGTTGACAGCCAAACCCAGACTTCTTGAGCCAGTGTACTTGGTTGAAATTCAAGCTCCAGAGCAAGCACTTGGAGGTATCTACAGTGTTCTTAACCAGAAGCGTGGACACGTGTTTGAGGAAATGCAGAGGCCTGGTACCCCTCTTTACAACATCAAGGCATATCTCCCTGTCATCGAGTCGTTCGGATTCTCGAGCACTTTGAGAGCTGCAACTTCTGGACAGGCTTTCCCACAGTGCGTGTTTGACCATTGGGACATGATGTCTTCAGATCCATTAGAAAGTGGGTCTCAAGCTGCGCAGTTGGTTGCTGATATCAGGAAGAGGAAGGGCTTGAAGGAGCAGATGACTCCATTGTCTGAGTTCGAAGACAAGCTATAA 2532 46.21 MVKFTVEELRRIMDYKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMSDESLKSYKGQRQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDEAKMMERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIISTCMNDQKDKLWPMLQKLGVVMKSEEKDLMGKALMKRVMQTWLPASNALLEMMIFHLPSPATAQKYRVENLYEGPLDDVYASAIRSCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTMEESGEHIVAGAGELHLEICLKDLQEDFMGGAEIIKSDPVVSFRETVLERSCRTVMSKSPNKHNRLYMEARPMEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLESGSQAAQLVADIRKRKGLKEQMTPLSEFEDKL 843
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19703052 19706687 + Lsi10G015310.1 Lsi10g01531 673088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01531 843 Pfam Elongation factor Tu GTP binding domain 17 342 IPR000795 GO:0003924|GO:0005525
Lsi10g01531 843 SUPERFAMILY EF-G C-terminal domain-like 484 560 IPR035647 -
Lsi10g01531 843 TIGRFAM small_GTP: small GTP-binding protein domain 20 176 IPR005225 GO:0005525
Lsi10g01531 843 Gene3D - 3 237 IPR027417 -
Lsi10g01531 843 PRINTS GTP-binding elongation factor signature 65 73 IPR000795 GO:0003924|GO:0005525
Lsi10g01531 843 PRINTS GTP-binding elongation factor signature 153 162 IPR000795 GO:0003924|GO:0005525
Lsi10g01531 843 PRINTS GTP-binding elongation factor signature 101 111 IPR000795 GO:0003924|GO:0005525
Lsi10g01531 843 PRINTS GTP-binding elongation factor signature 117 128 IPR000795 GO:0003924|GO:0005525
Lsi10g01531 843 PRINTS GTP-binding elongation factor signature 21 34 IPR000795 GO:0003924|GO:0005525
Lsi10g01531 843 SMART EFG_IV_2 606 722 IPR005517 GO:0005525
Lsi10g01531 843 SUPERFAMILY Translation proteins 342 476 IPR009000 -
Lsi10g01531 843 CDD aeEF2_snRNP_like_IV 559 731 - -
Lsi10g01531 843 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 341 IPR027417 -
Lsi10g01531 843 Pfam Elongation factor G, domain IV 611 722 IPR005517 GO:0005525
Lsi10g01531 843 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 58 73 IPR031157 -
Lsi10g01531 843 PANTHER - 1 842 - -
Lsi10g01531 843 Pfam Elongation Factor G, domain III 487 549 IPR041095 -
Lsi10g01531 843 Gene3D Translation factors 343 484 - -
Lsi10g01531 843 CDD EF2 20 230 - -
Lsi10g01531 843 Gene3D - 570 722 IPR014721 -
Lsi10g01531 843 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 1 842 - -
Lsi10g01531 843 SUPERFAMILY EF-G C-terminal domain-like 727 838 IPR035647 -
Lsi10g01531 843 CDD EF2_snRNP_III 487 559 - -
Lsi10g01531 843 CDD eEF2_snRNP_like_C 727 805 - -
Lsi10g01531 843 SMART EFG_C_a 724 813 IPR000640 -
Lsi10g01531 843 Pfam Elongation factor G C-terminus 724 811 IPR000640 -
Lsi10g01531 843 Gene3D Elongation Factor G (Translational Gtpase), domain 3 486 563 - -
Lsi10g01531 843 Gene3D - 723 843 - -
Lsi10g01531 843 CDD EF2_II 375 470 - -
Lsi10g01531 843 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 17 344 IPR000795 GO:0003924|GO:0005525
Lsi10g01531 843 Pfam Elongation factor Tu domain 2 394 467 IPR004161 GO:0005525
Lsi10g01531 843 SUPERFAMILY Ribosomal protein S5 domain 2-like 562 726 IPR020568 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g01531 Lsi-Chr10:19703052 Lsi10g01549 Lsi-Chr10:19912230 0 dispersed
Lsi10g01531 Lsi-Chr10:19703052 Lsi10g01548 Lsi-Chr10:19887308 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01531 K03234 - csv:101209544 1653.26