Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi10g01537 | ATGGCTGCTTCCTCCATGGCTCTCTCCTCCCCATCTCTCGCCGGCCAAGCCGTCAAATTATCCCCCACCACCTCCGACCTCCTCGGCGATGGCCGCATCACCATGAGAAAAACCGTCGGAAAGCCCAAGCCCATTTCCTCCGGAAGCCCATGGTACGGCCCAGATCGCGTCAAATACTTAGGCCCATTCTCTGGAGAGCCTCCTTCCTATTTGACTGGAGAATTCCCCGGCGACTACGGCTGGGACACTGCCGGTCTATCCGCCGACCCAGAAACCTTCGCGAAAAACCGTGAGCTAGAAGTCATCCACTCGAGATGGGCCATGCTCGGAGCTCTGGGTTGCGTATTCCCGGAGCTGTTGTCTCGCAACGGAGTGAAATTCGGGGAAGCCGTGTGGTTCAAAGCTGGGTCTCAAATCTTTAGCGAAGGTGGGCTCGATTATTTGGGGAACCCGAGCCTAATCCACGCTCAGAGCATTTTAGCCATTTGGGCTTCTCAAGTTGTGCTAATGGGTGCGGTTGAGGGGTACAGAATTGCCGGCGGACCATTGGGGGAAATCACAGACCCAATTTACCCAGGTGGGAGCTTTGATCCATTGGGACTTGCTGATGATCCAGAGGCATTTGCAGAATTGAAAGTGAAGGAACTTAAGAATGGGAGATTGGCTATGTTTTCGATGTTTGGTTTCTTTGTACAGGCGATTGTGACTGGGAAAGGGCCCTTGGAGAATTTGGCTGATCATTTGGCTGACCCTGTTAACAATAATGCTTGGGCTTATGCTACTAACTTTGTACCTGGAAAGTGA | 804 | 52.61 | MAASSMALSSPSLAGQAVKLSPTTSDLLGDGRITMRKTVGKPKPISSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK | 267 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 19772142 | 19772945 | + | Lsi10G015370.1 | Lsi10g01537 | 673094 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi10g01537 | 267 | Gene3D | Chlorophyll a/b binding protein domain | 58 | 260 | - | - | |
| Lsi10g01537 | 267 | PANTHER | CHLOROPHYLL A/B BINDING PROTEIN | 1 | 267 | IPR001344 | GO:0009765|GO:0016020 | |
| Lsi10g01537 | 267 | Pfam | Chlorophyll A-B binding protein | 67 | 233 | IPR022796 | - | |
| Lsi10g01537 | 267 | MobiDBLite | consensus disorder prediction | 29 | 49 | - | - | |
| Lsi10g01537 | 267 | PANTHER | CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTIC | 1 | 267 | - | - | |
| Lsi10g01537 | 267 | SUPERFAMILY | Chlorophyll a-b binding protein | 50 | 264 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi01g00173 | Lsi-Chr1:1671452 | Lsi10g01537 | Lsi-Chr10:19772142 | 0 | dispersed | |
| Lsi02g00878 | Lsi-Chr2:8302534 | Lsi10g01537 | Lsi-Chr10:19772142 | 1.42E-104 | dispersed | |
| Lsi02g00879 | Lsi-Chr2:8306933 | Lsi10g01537 | Lsi-Chr10:19772142 | 2.43E-166 | dispersed | |
| Lsi02g00880 | Lsi-Chr2:8319931 | Lsi10g01537 | Lsi-Chr10:19772142 | 0 | dispersed | |
| Lsi03g01151 | Lsi-Chr3:21810160 | Lsi10g01537 | Lsi-Chr10:19772142 | 1.49E-171 | dispersed | |
| Lsi03g02207 | Lsi-Chr3:33090052 | Lsi10g01537 | Lsi-Chr10:19772142 | 2.39E-30 | transposed | |
| Lsi08g00191 | Lsi-Chr8:4030824 | Lsi10g01537 | Lsi-Chr10:19772142 | 3.44E-60 | transposed | |
| Lsi05g00685 | Lsi-Chr5:9123085 | Lsi10g01537 | Lsi-Chr10:19772142 | 9.15E-119 | transposed | |
| Lsi11g01355 | Lsi-Chr11:22168602 | Lsi10g01537 | Lsi-Chr10:19772142 | 1.41E-150 | transposed | |
| Lsi01g00172 | Lsi-Chr1:1668479 | Lsi10g01537 | Lsi-Chr10:19772142 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi10g01537 | K08912 | - | csv:101213845 | 535.028 |