Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01538 ATGGCATCTGGGAGTTCATTGAATGATCATTTATCCAAGAAGACTTCCTTTTGGGGCTTGTCATTATGGGTTTTGATCTGCATTTGCATTGGTGCATTTATAGTTTTGATTCTTGGTTTGTTATCTATGTGGATCCTGTTTCGAAAAAAATCTAAGAGATCCGTGGACAAATTCCCTCTTTCCCAAATACCTAATTTTTCAAAAGATATCAGGATAGATCAGGTTGGGATTCAAATTCCCAATGAACACCCTGAAAATAGACTTCTTTCAGTTGATGTCAAAAGAAATGAAGAAAATTCAGAAGTTATGGCTATGACAAAATCAAGTGAACATGATAATAATAGCCAATGCAGTTCCACTTACCAACATGAAAAAGCAGGCAATTCACAATCAGGTGAAGAAGGAAGCTCTGGAAATGCTCGGAAGCAGGCTTCGAGATCGTATGGAGGATATGGAGGAATTGTGCCACCGTCTCCTCTCGTTGGCTTACCCGAAATTTCACATCTTGGGTGGGGCCACTGGTTCACTCTTAGGGATCTAGAGCTTGCAACTAATCGTTTTTCTACCGAAAATATTCTCGGGGAGGGGGGATATGGGGTTGTGTATAAGGGCAGACTCATCAATGGCACTGAGGTTGCAGTGAAAAAACTTCTCAATAATCTGGGTCAGGCAGAGAAAGAGTTTAGAGTTGAAGTGGAGGCTATTGGCCACGTTCGGCATAAGAATCTTGTCCGACTGCTGGGTTATTGCATAGAAGGAGTCCATAGGATGCTAGTATATGAATATGTGAACAATGGAAATCTAGAACAGTGGCTACATGGAGCTATGTCCCAACACGGCACACTTACTTGGGAGGCTCGCATGAAGGTGCTTCTTGGCACTGCTAAGGCGCTTGCGTATTTACACGAAGCAATCGAGCCAAAAGTTGTTCACAGAGATATAAAATCAAGCAACATTTTGATTGATGATGAGTTCAATGCCAAAGTTTCTGATTTTGGATTGGCCAAACTCTTGGGCTCTGGAGAGAGTCACATCACAACTAGAGTTATGGGAACATTTGGGTATGTGGCACCAGAATATGCAAATACGGGCTTGTTGAATGAAAAGAGTGACATTTATAGCTTCGGCGTTCTCCTGCTAGAAGCAATTACAGGAAGGGACCCTGTGGATTACGCACGTCCTTCTAATGAGGTTAATCTGGTTGAGTGGCTAAAGATGATGGTAGCGACAAGGAGAGCAGAGGAAGTTGTGGACATGAACCTCGAGATCAAGCCAACTACTCGTGCTTTGAAACGTGCCCTTCTTGTTGCACTTAGGTGTATTGATCCGGAGTCAATCAAGAGACCCAAGATGAGTCAAGTTGTAAGAATGCTTGAAGCTGACGAATTTCCGCTCCACGAGGATAGAAGGAACCGAAAAAGCCGATCGATAAGCTTGGAGATCGAGTCAATGAAAGAAATATCAGGTTCAGAGCAGACGGGTGGGCCGTCCGAGAGCCATAAATCAGAGACAAGCCATGAATAG 1524 43.31 MASGSSLNDHLSKKTSFWGLSLWVLICICIGAFIVLILGLLSMWILFRKKSKRSVDKFPLSQIPNFSKDIRIDQVGIQIPNEHPENRLLSVDVKRNEENSEVMAMTKSSEHDNNSQCSSTYQHEKAGNSQSGEEGSSGNARKQASRSYGGYGGIVPPSPLVGLPEISHLGWGHWFTLRDLELATNRFSTENILGEGGYGVVYKGRLINGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNNGNLEQWLHGAMSQHGTLTWEARMKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLGSGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYARPSNEVNLVEWLKMMVATRRAEEVVDMNLEIKPTTRALKRALLVALRCIDPESIKRPKMSQVVRMLEADEFPLHEDRRNRKSRSISLEIESMKEISGSEQTGGPSESHKSETSHE 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19777590 19782759 + Lsi10G015380.1 Lsi10g01538 673095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01538 507 Coils Coil 207 227 - -
Lsi10g01538 507 ProSiteProfiles Protein kinase domain profile. 187 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g01538 507 ProSitePatterns Protein kinases ATP-binding region signature. 193 216 IPR017441 GO:0005524
Lsi10g01538 507 Gene3D Phosphorylase Kinase; domain 1 169 262 - -
Lsi10g01538 507 SMART serkin_6 187 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g01538 507 MobiDBLite consensus disorder prediction 466 507 - -
Lsi10g01538 507 CDD STKc_IRAK 193 459 - -
Lsi10g01538 507 Pfam Protein kinase domain 188 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g01538 507 MobiDBLite consensus disorder prediction 466 480 - -
Lsi10g01538 507 PANTHER OS01G0323000 PROTEIN 3 501 - -
Lsi10g01538 507 ProSitePatterns Serine/Threonine protein kinases active-site signature. 309 321 IPR008271 GO:0004672|GO:0006468
Lsi10g01538 507 MobiDBLite consensus disorder prediction 106 144 - -
Lsi10g01538 507 PANTHER OS10G0497600 PROTEIN 3 501 - -
Lsi10g01538 507 SUPERFAMILY Protein kinase-like (PK-like) 171 463 IPR011009 -
Lsi10g01538 507 Gene3D Transferase(Phosphotransferase) domain 1 263 476 - -
Lsi10g01538 507 MobiDBLite consensus disorder prediction 481 499 - -
Lsi10g01538 507 MobiDBLite consensus disorder prediction 103 149 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01486 Lsi-Chr8:23012388 Lsi10g01538 Lsi-Chr10:19777590 0 dispersed
Lsi09g01524 Lsi-Chr9:23341067 Lsi10g01538 Lsi-Chr10:19777590 3.67E-163 dispersed
Lsi10g01538 Lsi-Chr10:19777590 Lsi11g00661 Lsi-Chr11:6964869 2.44E-158 dispersed
Lsi08g00568 Lsi-Chr8:13928215 Lsi10g01538 Lsi-Chr10:19777590 5.34E-72 transposed
Lsi11g00119 Lsi-Chr11:1318546 Lsi10g01538 Lsi-Chr10:19777590 4.33E-72 transposed
Lsi10g01538 Lsi-Chr10:19777590 Lsi11g01627 Lsi-Chr11:24618672 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83996 PF00069 Pkinase 1.50E-48 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01538 - - csv:101214087 954.51