Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01541 ATGTCGACTAAGGGGGAGTCGATTTGCTTTAGGTTTATTGGGTTTTGGTTTGATGGAGGATTGGGGAAGGTTCATGGAAAAGTGGGCTTCTGGACTTGTGATCCGAATTCAGCCGAAGTGGAGTTCTTTTCTGATTATGGCGATGCCAGTAGATACAAAATTCAGGAAGTAATCGGGAAAGGAAGCTATGGGGTTGTCTGTTCTGCAATTGACACCCGCACGGGTGACAAGGTTGCGATAAAGAAGATACACAATATTTTTGAGCATATATCTGATGCGGTTAGAATTCTTCGCGAGATAAAGCTGCTTAGACTTCTTCGCCATCCTGATATTGTTGAAATTAAACACATTATGCTGCCACCTTCAAGGAGAGATTTCAAAGACATCTACGTTGTTTTTGAGCTGATGGAATCAGATCTCCACCAAGTCATTAAAGCAAATGATGATCTGACTCGAGAACATTATCAGTTTTTCCTTTACCAACTTCTTCGTGCATTAAAATATATCCATACAGATCTTATGGTGGCCACATCTGACTCAAAGCTTCATTTTGCAGCTAATGTCTACCATCGTGATTTAAAACCGAAGAATATATTAGCAAATGCAAATTGTAAACTTAAAATTTGTGATTTTGGATTGGCAAGAGTTGCGTTCAGTGACACACCAACAACAATTTTCTGGACGGATTATGTTGCTACTAGATGGTACCGAGCTCCAGAGCTATGTGGTTCATTTTTCTCCAAGTATACACCTGCAATTGATATATGGAGTATTGGCTGCATATTTGCTGAAGTATTAATGGGGAAGCCACTTTTTCCTGGTAAAAACGTTGTTCACCAGCTCGATTTGATGACGGATCTCCTTGGAACTCCTTCATTAGATACAATCTCCAGGGTACGCAATGACAAGGCTAGAAGATATTTAACTACTATGAGGAAAAAGCAGCCGGTGCCATTTTCTCAAAAGTTCCCCAATGCGGATCCTTTAGCACTGAGGCTACTAGAAAGACTGCTTGCTTTCGATCCAAAAGATAGACCAACTGCTGAAGAGGCACTGGCTGATCCATACTTCAAGGGATTGGCAAAAATTGAGAGGGAACCTTCCTGCCAGCCAATCACAAAGATGGAATTCGAATTTGAGAGACGGAGGGTCACAAAAGAAGACATTCAAGAGCTAATCTTCCGGGAGATACTAGAATATCATCCTCAGCTACTAAAAGACTACATGAATGGGACTGAGAGAACAAATTTTCTATATCCAAGTGCTGTCGACCAATTTAGAAAACAGTTTGTGCATCTGGAGGAAAATGGTGGTAAAAGTGCGCCAGTAATTCCTCTTGATAGAAAGCATGTATCCCTTCCAAGGTCAACAGTTGTACACTCGAACCCGGTCTATTCTAAGGACCAAGTAAATAATATACCCCTCCAAGATGGGAAGATCTCTGAAGAGGCATACAGCAAGAATTCCCGAGATAGTGAAGGACGACTAACAAACATATCGAGGACCATGCAGGCACCACAAAAAATCCCATTTACTGATTCCTCTATCGCAGCAGCTAAGCCTGGAAGAGTGGTTGGACCGGTTATAGCAGATGAGAATGGAAGGCTAGTGAAGGAGCCATACGATCCAAGAACGTTGATCAGAGGTGCCATTCTTCCTCCTGCATATCACTACCACCAAAAACCCATTGCTGGAAATCAAGACAGATCTGCAGCAGAAACGAAACTTGATATTTCTTTAAGGGCCGCTAAGCAAGCATCCCAGTGTGGCATGGCTTCCAAATTAGGATCAGATATAGCCATCAGCATTGACTCGAACCCCTTTTACATGACACGTGCCGGAGTGAACAAGGTTGAACTCAAGGACCAAATATCGATCGATGCAAACTTTCTGCAGGCCAAAGCCACCCAATATGGTGGTCTTAGTGCAGCAACAGCCACCGCCACATCGGTTGCTCACAGAAAGATTATAAAAGCCATGGATGAAACAAGAAGAACTCAGAGGAAGGATGGCCGTCGGCTCGGCTGCTTTGTGTGTAATAGAGATCGAAGAGAGAGAGGAAAATTGGGAAAGAAAGGCTTCAGACATTTCTTGTCGCTTGAAAAATCCGAAACCCTAATTCGAATACTGCAGGCCGCTGAACCAGAGAAATCAAAAGGAATATTAATGGAAAAAGAGATTAATATTGTCAATGACGGGGCGGCGGGGGACGATCAGACCGCGGAGGATTTTTATGATGTTGACCAGAGGGAGAACGACGCAAAGGTCGCGGAGCTGAACCAGAGAATTGAGATTTTGGAGCGTGAAAAGAAAAAATTGGTTGACGAAAATGGAGAAATCAAAGATAAGATTAAAGGATTGTCAGCGGAGATTGAAGGGTTGAAGAGTGAAGAGGGGACGCTGAAAGAACGACTGAAAGAACTGGAGAAAGAAGTTGAACGTTCTGAAGAGGGAAATAAGGTGTTAGAGTCGGTTGCGGCGAGGGCACTGGAGCTTGAGACTGAAGTCTCAAGGCTACAACATGATTTGATATCTGCAATGAATGGAGCTGATGAGGCGAATGCTGAAGTTGCGGAGTTGAGGAAAAATTTGGGGGAAAAGGGAGTGAAGGTTGCAGCTCTGGAGGAAGAGTTGGAAGCCCTGAAGAAAGCAAAGGCAGAGAGTGAAAAGAAAGTCAGAGAATTGGAGAGGAAAGTTGGAGTTTTGGAGGTCAAGGAGATAGAGGAGAAGAGTAAAAAAGTTAGGGTAGAGGAGGAAATGAGAGACAAAATTGAGGAGAAGGAGAGGGAAATCTTCAGCTTTAAAAAGATTATTGAGAATTTAGAATCGGTGGTAACGAAGAATGGGCTGGAGTTAGACAAGTGGATCGAGGAGAAACTTAAGGTGGAAGAGTTGCTGAAAGAGTCAGAGGAGAAAACAAAAATGGTAGAGTCGAAAATGGTTCAGTTGCAGAAGGAAGTAGAGGAAGCACACAAAGTCATTAGTGGATTAAAGGAGAAAGCAGTGAATGCTTTGAATGGAACTGCAGAGGAACTCAAGTCGGCTTTCGAAGGTGCAGAGAAGGAATTGAACTTGAACTGGCCTATAATTGCAGGTTCAACTGGAGTTGTTGCTGCCGTAACTGCACTGGCCCTTGTTTTAATACAGCCAGCAGAAGAAACCATGAGAAGCAAACAAGCTTCTGCTCTTCTTTTCACTTTGCTTGCTGGGCTGCTTTCTCAAAGCCTGCTCATCCCTGTATTCTCCACCTCCATTGTTGACCAGAAAAGCTATTACTCTCCTCCAGACCCACATGCTGGAACTCCCCCAACAGGTTCACATAGCAGCCCTACCCCACCATCACATGGTTATGGAGGAACGCCGCCGCATTACTCCACACCAACTCCTTCCACACCGTCAAACCCTCCGTCTGGTGGTGGTGGATACTACAACCCTCCATCTTCCGGTGGCGGTAGCCCACCAACCACCCCTGTAGATCCAGGCACTCCAACTACTCCAAGCACACCAAGCACTCCCACTACTCCTTTCACCTGCAATTATTGGCTGAATCATCCAGGAATGATATGGGGAGTATTGGGATGGTGGGGAACATTGGGAAATGCCTTTGGAGCAACCAATGTCCCAGGGTTTGGAACAAATCTCAACTTGCTCCAAGCACTTTCAAACACAAGGACTGATGGGTTTGGGGCCCTTTTAAGGGAAGGCACTGCTTCATACCTCAACTCTCTTGCCAGTAACAGATTCCCCTTCACAACCAAGCAAGTTAGGACGAGTTTCGTCTCGGCACTCAGCTCCAACAGAGCAGCAGCTGATCAGGCCAACACCTTCAAAAAACAAACTCATATAGAAGCGTCCGGTGCTCTGAGAAGGTGGGTCGGCGAAGTTAAGAACTCCCATTAA 3900 44.62 MSTKGESICFRFIGFWFDGGLGKVHGKVGFWTCDPNSAEVEFFSDYGDASRYKIQEVIGKGSYGVVCSAIDTRTGDKVAIKKIHNIFEHISDAVRILREIKLLRLLRHPDIVEIKHIMLPPSRRDFKDIYVVFELMESDLHQVIKANDDLTREHYQFFLYQLLRALKYIHTDLMVATSDSKLHFAANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLMGKPLFPGKNVVHQLDLMTDLLGTPSLDTISRVRNDKARRYLTTMRKKQPVPFSQKFPNADPLALRLLERLLAFDPKDRPTAEEALADPYFKGLAKIEREPSCQPITKMEFEFERRRVTKEDIQELIFREILEYHPQLLKDYMNGTERTNFLYPSAVDQFRKQFVHLEENGGKSAPVIPLDRKHVSLPRSTVVHSNPVYSKDQVNNIPLQDGKISEEAYSKNSRDSEGRLTNISRTMQAPQKIPFTDSSIAAAKPGRVVGPVIADENGRLVKEPYDPRTLIRGAILPPAYHYHQKPIAGNQDRSAAETKLDISLRAAKQASQCGMASKLGSDIAISIDSNPFYMTRAGVNKVELKDQISIDANFLQAKATQYGGLSAATATATSVAHRKIIKAMDETRRTQRKDGRRLGCFVCNRDRRERGKLGKKGFRHFLSLEKSETLIRILQAAEPEKSKGILMEKEINIVNDGAAGDDQTAEDFYDVDQRENDAKVAELNQRIEILEREKKKLVDENGEIKDKIKGLSAEIEGLKSEEGTLKERLKELEKEVERSEEGNKVLESVAARALELETEVSRLQHDLISAMNGADEANAEVAELRKNLGEKGVKVAALEEELEALKKAKAESEKKVRELERKVGVLEVKEIEEKSKKVRVEEEMRDKIEEKEREIFSFKKIIENLESVVTKNGLELDKWIEEKLKVEELLKESEEKTKMVESKMVQLQKEVEEAHKVISGLKEKAVNALNGTAEELKSAFEGAEKELNLNWPIIAGSTGVVAAVTALALVLIQPAEETMRSKQASALLFTLLAGLLSQSLLIPVFSTSIVDQKSYYSPPDPHAGTPPTGSHSSPTPPSHGYGGTPPHYSTPTPSTPSNPPSGGGGYYNPPSSGGGSPPTTPVDPGTPTTPSTPSTPTTPFTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRTDGFGALLREGTASYLNSLASNRFPFTTKQVRTSFVSALSSNRAAADQANTFKKQTHIEASGALRRWVGEVKNSH 1299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19818071 19829507 + Lsi10G015410.1 Lsi10g01541 673098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01541 1299 PRINTS Tropomyosin signature 906 929 IPR000533 -
Lsi10g01541 1299 PRINTS Tropomyosin signature 965 990 IPR000533 -
Lsi10g01541 1299 PRINTS Tropomyosin signature 755 772 IPR000533 -
Lsi10g01541 1299 PRINTS Tropomyosin signature 875 903 IPR000533 -
Lsi10g01541 1299 CDD STKc_TDY_MAPK 51 402 - -
Lsi10g01541 1299 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 36 533 - -
Lsi10g01541 1299 Gene3D - 745 912 - -
Lsi10g01541 1299 Gene3D Phosphorylase Kinase; domain 1 67 403 - -
Lsi10g01541 1299 SMART serkin_6 52 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g01541 1299 Pfam Protein kinase domain 52 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g01541 1299 SUPERFAMILY Tropomyosin 754 941 - -
Lsi10g01541 1299 Coils Coil 952 1000 - -
Lsi10g01541 1299 Gene3D Transferase(Phosphotransferase) domain 1 138 380 - -
Lsi10g01541 1299 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 36 533 - -
Lsi10g01541 1299 Coils Coil 749 905 - -
Lsi10g01541 1299 SUPERFAMILY Protein kinase-like (PK-like) 48 361 IPR011009 -
Lsi10g01541 1299 MobiDBLite consensus disorder prediction 1150 1170 - -
Lsi10g01541 1299 ProSitePatterns Protein kinases ATP-binding region signature. 58 82 IPR017441 GO:0005524
Lsi10g01541 1299 Coils Coil 1002 1022 - -
Lsi10g01541 1299 ProSiteProfiles Protein kinase domain profile. 52 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g01541 1299 Coils Coil 907 944 - -
Lsi10g01541 1299 MobiDBLite consensus disorder prediction 1092 1172 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g01541 Lsi-Chr10:19818071 Lsi09g00226 Lsi-Chr9:2368024 2.00E-109 dispersed
Lsi02g02208 Lsi-Chr2:28512782 Lsi10g01541 Lsi-Chr10:19818071 2.96E-07 transposed
Lsi07g00868 Lsi-Chr7:9830816 Lsi10g01541 Lsi-Chr10:19818071 0 transposed
Lsi09g01365 Lsi-Chr9:21696552 Lsi10g01541 Lsi-Chr10:19818071 0 transposed
Lsi11g01645 Lsi-Chr11:24763873 Lsi10g01541 Lsi-Chr10:19818071 7.12E-45 transposed
Lsi10g01541 Lsi-Chr10:19818071 Lsi11g01637 Lsi-Chr11:24708069 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83997 PF00069 Pkinase 1.00E-60 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01541 - - csv:101216657 1144.8