Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01545 ATGGGAAGAGGTAAGATTGAAATAAAAAGAATTGAAAATACTACAAATCGTCAAGTCACCTTTTGCAAGAGAAGAAATGGATTGCTTAAAAAAGCTTATGAATTGTCTGTTCTTTGTGATGCTGAAGTTGCCCTCATCGTCTTCTCTACTCGTGGCCGTCTCTATGAATATGCAAATAATAGTGTTAGAGGAACGATTGAGAGGTACAAGAAAGCATTTGCTGACTCTTCCAATTCCGGATTATCAGTTGCGGAAGCTAATGTACAGGCATATTCTGGGAGAAGCACTCAGCTCATTGTCATTAAAGGACCTCAAAAGTCTGGAGGGCAGATTGGAGAGAGGAATCAGCAAAGTTAG 357 39.78 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVRGTIERYKKAFADSSNSGLSVAEANVQAYSGRSTQLIVIKGPQKSGGQIGERNQQS 118
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19862865 19870361 - Lsi10G015450.1 Lsi10g01545 673102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01545 118 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL1-RELATED 1 89 - -
Lsi10g01545 118 SUPERFAMILY SRF-like 2 73 IPR036879 GO:0003677|GO:0046983
Lsi10g01545 118 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lsi10g01545 118 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Lsi10g01545 118 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lsi10g01545 118 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lsi10g01545 118 Gene3D - 14 76 IPR036879 GO:0003677|GO:0046983
Lsi10g01545 118 PANTHER MADS BOX PROTEIN 1 89 - -
Lsi10g01545 118 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lsi10g01545 118 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lsi10g01545 118 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lsi10g01545 118 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00034 Lsi-Chr8:849912 Lsi10g01545 Lsi-Chr10:19862865 4.71E-49 dispersed
Lsi10g01545 Lsi-Chr10:19862865 Lsi07g00957 Lsi-Chr7:12109274 3.78E-32 dispersed
Lsi01g00205 Lsi-Chr1:1920957 Lsi10g01545 Lsi-Chr10:19862865 1.61E-47 wgd
Lsi10g01545 Lsi-Chr10:19862865 Lsi02g00845 Lsi-Chr2:7911295 1.00E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26110 PF00319 SRF-TF 6.70E-27 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01545 K09264 - csv:101217987 181.415