Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01548 ATGGATGCTAATGTACGAGCTCGTTTCACACTCGGCAAACAGTCCTCGCTCAAGCCAGAACGTGAAGGTTCGCCTGTGGTTACCGACGAGCTTGATGATTCGATCGCGATTCATCCTGGGATTAAGCTTATGTACTTGGCCAATGATGGTGACTTGGATGGGATTAGGGAGCTACTGGATTCGGGTACCGACGTCAATTTTCACGACACTGATGGCCGAACCTCTTTGCATGTTGCTGCTTGTCAGGGCCGGCCGGATGTCGTTAAGTTGCTACTCGAAAGGGGTGCGGATGTCGACGTTCAGGACCAATGGGGCAGCACGCCTCTTGCAGATGCTATATATTACAAGAATCATGATGTGATCAAGCTCTTAGAGAAACACGGTGCAAAGCTACCGATGGCTCCAATGCTCGTGCAAAATGCTCGTGAAGTTCCAGAATATGAGATCAATCCAAATGAGCTTGATTTTTCTAAGAGTGTGAACATTACAAAAGGAACTTTCCGCAGTGCTTCATGGCGTGGAATTCAAGTTGCTGTGAAGACACTAGGCGAGGAAGTTTTCACCGATGAGGATAAAGTGAAGGCATTTAGGGATGAACTTGCTTTACTTCAGAAGATACGCCATCCTAATGTTGTCCAATTTCTGGGAGCTGTAACACAAAGTAGTCCAATGATGATTGTAACAGAGTATTTGCCCCAGGGGGACCTTCATGCATTCTTGAAACGTAAAGGTCCCTTGAAGCTAGCAACAGTTGTAAAGTTTGCTCTTGACATTGCAAGAAATGTACTGCGGGATGATTCTGGGCACCTGAAAGTTGCAGACTTTGGAGTTAGCAAACTTCTAAAATTTTCGAAGGGGATTAAAGAAGAAAGACCTGTGGCTGTGACATGTCATGAAACTTCATGGCGATATGCGGCACCTGAGGTTTATAAAAATGAAGAATATGATACAAAAGTGGATGTATTTTCATTTTCCTTGATCTTGCAAGAGAGAGTCCAGTCTTCTCCTTTAAAACCAAGCCCGAGAGTACACTATTCAAGCCAAATCTGTTGGGCCATTTATTTGGAGGCATTCCTGATGAACCCTGATTTGGTACACCCAACTAGTAGGAGGGAAAACTCCATAGGCTCACCCAACCATGCCCGACGTCATTCTCCTCAAAATCTTGCTCACGGCTCCAGCCCAAGGAACTTGAACAGGAATCTAGCTCCAGTATTAATTGAGAGGGCATATTTGAAGCCTAATTCATTTGCGCCCATCTCTTTAGAGGTATCCATTATGACCCTCATTAGACACTCAATGAACGGGAGGAAAGACTCCATTGGCCCATTCCAGATGGGTACCATTAACAATGGACAATTATATAACTTACAAGATCCAAATCAACAGACATTTGAGATCTCGATGATACAAGGCAATCCACCTTTTCCAACAATGCCAGAAAATGAAGTACCCAAAGCTTATATAGCTAATGAACGCCCACCATTTACGTCTCCACCAAAGCGTTATGCACTCGGGATACAGGAGCTAATTCAGGAATGTTGGGATGAAAAGCCGCATAAAAGACCCACGTTTCGGCAAATAATAGGAAGGTTGGAGGATATTAACGCTCGACTCATGCAAACGAGAAGCTTGAAGGTGAAGTTTACAGCCGAGGAGCTTCGTAGGATTATGGACTACAAGCATAACATTCGTAATATGTCTGTTATTGCTCACGTCGATCATGGGAAGTCGACACTTACAGACTCTCTTGTGGCTGCTGCGGGTATCATTGCACAAGAAGTTGCCGGTGATGTACGAATGACAGACACTCGCCAAGATGAGGCAGAGCGTGGTATCACCATTAAATCTACTGGAATCTCCCTCTACTATGAGATGTCTGATGAATCCTTGAAAAGTTACAAGGGAGAGAGACAGGGAAATGAGTATCTTATCAATCTTATTGATTCACCTGGGCACGTTGACTTCTCATCTGAGGTTACAGCTGCATTGCGTATTACTGATGGTGCCCTTGTTGTGGTGGATTGTGTCGAAGGTGTTTGTGTCCAAACAGAGACCGTGCTGCGTCAGGCTTTGGGAGAAAGGATTAGACCTGTCTTGACTGTTAACAAGATGGACAGGTGCTTCCTTGAACTCCAAGTGGATGGAGAAGAGGCTTATCAAACATTTCAGAGGGTCATAGAGAATGCCAATGTGATTATGGCCACATACGAGGATCCACTTCTTGGCGATGTTCAAGTGTACCCCGAGAAAGGAACAGTTGCTTTCTCTGCTGGTTTGCACGGTTGGGCGTTTACCCTGACTAACTTTGCCAAGATGTATGCCTCCAAGTTTGGAGTAGACGAGTCAAAGATGATGGAGAGACTTTGGGGTGAGAACTTCTTTGATCCTGCAACCAAGAAGTGGACCAGCAAGAACACTGGCTCTCCAACATGCAAGCGTGGGTTTGTCCAGTTCTGCTATGAACCCATCAAGCAGATCATTGCAACTTGCATGAACGATCAGAAGGATAAGCTATGGCCCATGTTGCAGAAGCTTGGAGTTGTCATGAAATCTGAAGAGAAGGATCTGATGAGCAAAGCATTGATGAAGCGGGTCATGCAAACATGGCTCCCAGCAAGCAGTGCTCTTTTGGAAATGATGATCTTTCATCTTCCATCCCCTGCCACGGCACAAAAGTACCGTGTTGAGAATTTGTACGAGGGTCCACTAGATGATGCATATGCCAGTGCCATTAGAAGTTGTGATCCTGAAGGACCTCTTATGCTTTATGTATCGAAGATGATTCCTGCATCAGACAAGGGGAGGTTCTTTGCCTTTGGACGTGTCTTCTCTGGGAAAGTTTCAACTGGTTTGAAAGTTAGAATTATGGGACCAAACTATGTTCCTGGAGAGAAGAAAGACTTGTATGTGAAGAGTGTCCAGAGAACTGTCATTTGGATGGGAAAGAAACAAGAAACAGTGGAGGATGTGCCTTGTGGTAACACTGTTGCCATGGTTGGGTTGGATCAATACATCACGAAGAATGCGACTCTGACAAACGAGAAGGAAGTTGATGCCCATCCAATTCGAGCCATGAAATTTTCTGTATCTCCTGTGGTGCGTGTGGCTGTTCAGTGCAAGGTGGCATCTGATCTTCCCAAGCTGGTGGAAGGCCTTAAACGTCTGGCGAAGTCAGATCCTATGGTCGTGTGTACCATGGAGGAATCTGGTGAGCACATTGTTGCTGGTGCTGGAGAACTACATCTTGAGATCTGTCTAAAGGATTTGCAAGATGACTTCATGGGTGGAGCTGAGATCATAAAATCCGACCCTGTTGTCTCTTTCCGTGAAACTGTCCTTGAGAGGTCATGCCGCACAGTGATGAGTAAATCCCCCAACAAACACAATCGTCTGTACATGGAAGCACGACCCATGGAGGAAGGATTGGCAGAGGCTATTGATGACGGGCGCATTGGACCACGGGATGACCCTAAAGTTAGGTCTAAAATCCTGTCGGAGGAGTACGGTTGGGACAAAGATCTTGCTAAGAAGATTTGGTGCTTTGGTCCTGAGACTACTGGCCCTAACATGGTGGTTGATATGTGTAAGGGAGTTCAATACCTGAATGAAATCAAGGATTCCGTTGTCGCCGGTTTCCAATGGGCGTCGAAAGAAGGTGCATTGGCTGAAGAAAACATGAGAGGCATCTGTTTTGAAGTTTGTGATGTGGTGCTTCACGCTGATGCCATCCACAGAGGAGGTGGTCAAGTCATTCCGACCGCTAGGAGGGTAATCTATGCTTCTCAACTGACTGCCAAACCAAGACTCCTCGAGCCAGTGTACCTAGTGGAGATTCAGGCTCCTGAGCAAGCTCTTGGTGGTATCTACAGTGTTCTTAACCAGAAGCGTGGGCACGTTTTTGAGGAAATGCAGAGGCCTGGTACCCCTCTTTACAACATCAAGGCGTATCTCCCTGTCATCGAGTCCTTCGGGTTCTCGAGCACATTGAGAGCTGCAACTTCTGGGCAGGCATTCCCACAGTGTGTTTTTGACCATTGGGACATGATGTCGTCCGATCCATTGGAATCTGGTTCCCAGGCTGCGCAGCTAGTTGCAGATATCCGCAAGAGGAAGGGATTGAAGGAGCAAATGACCCCACTTTCTGAGTTCGAGGACAAGCTGTAA 4167 46.22 MDANVRARFTLGKQSSLKPEREGSPVVTDELDDSIAIHPGIKLMYLANDGDLDGIRELLDSGTDVNFHDTDGRTSLHVAACQGRPDVVKLLLERGADVDVQDQWGSTPLADAIYYKNHDVIKLLEKHGAKLPMAPMLVQNAREVPEYEINPNELDFSKSVNITKGTFRSASWRGIQVAVKTLGEEVFTDEDKVKAFRDELALLQKIRHPNVVQFLGAVTQSSPMMIVTEYLPQGDLHAFLKRKGPLKLATVVKFALDIARNVLRDDSGHLKVADFGVSKLLKFSKGIKEERPVAVTCHETSWRYAAPEVYKNEEYDTKVDVFSFSLILQERVQSSPLKPSPRVHYSSQICWAIYLEAFLMNPDLVHPTSRRENSIGSPNHARRHSPQNLAHGSSPRNLNRNLAPVLIERAYLKPNSFAPISLEVSIMTLIRHSMNGRKDSIGPFQMGTINNGQLYNLQDPNQQTFEISMIQGNPPFPTMPENEVPKAYIANERPPFTSPPKRYALGIQELIQECWDEKPHKRPTFRQIIGRLEDINARLMQTRSLKVKFTAEELRRIMDYKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMSDESLKSYKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTSKNTGSPTCKRGFVQFCYEPIKQIIATCMNDQKDKLWPMLQKLGVVMKSEEKDLMSKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYASAIRSCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTMEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLERSCRTVMSKSPNKHNRLYMEARPMEEGLAEAIDDGRIGPRDDPKVRSKILSEEYGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLESGSQAAQLVADIRKRKGLKEQMTPLSEFEDKL 1388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19887308 19907009 - Lsi10G015480.1 Lsi10g01548 673105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01548 1388 Gene3D - 34 142 IPR036770 -
Lsi10g01548 1388 Gene3D Phosphorylase Kinase; domain 1 148 231 - -
Lsi10g01548 1388 ProSiteProfiles Ankyrin repeat profile. 71 103 IPR002110 GO:0005515
Lsi10g01548 1388 Pfam Elongation factor Tu domain 2 939 1012 IPR004161 GO:0005525
Lsi10g01548 1388 Gene3D - 1115 1267 IPR014721 -
Lsi10g01548 1388 SUPERFAMILY Ribosomal protein S5 domain 2-like 1107 1271 IPR020568 -
Lsi10g01548 1388 SUPERFAMILY EF-G C-terminal domain-like 1029 1105 IPR035647 -
Lsi10g01548 1388 CDD EF2_snRNP_III 1032 1104 - -
Lsi10g01548 1388 CDD EF2 565 775 - -
Lsi10g01548 1388 CDD aeEF2_snRNP_like_IV 1104 1276 - -
Lsi10g01548 1388 Gene3D Transferase(Phosphotransferase) domain 1 466 551 - -
Lsi10g01548 1388 SUPERFAMILY Protein kinase-like (PK-like) 469 555 IPR011009 -
Lsi10g01548 1388 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 549 886 IPR027417 -
Lsi10g01548 1388 Pfam Elongation factor G, domain IV 1156 1267 IPR005517 GO:0005525
Lsi10g01548 1388 Gene3D - 552 782 IPR027417 -
Lsi10g01548 1388 SMART EFG_C_a 1269 1358 IPR000640 -
Lsi10g01548 1388 SMART EFG_IV_2 1151 1267 IPR005517 GO:0005525
Lsi10g01548 1388 Gene3D - 1268 1388 - -
Lsi10g01548 1388 Gene3D Elongation Factor G (Translational Gtpase), domain 3 1031 1108 - -
Lsi10g01548 1388 ProSiteProfiles Protein kinase domain profile. 156 539 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g01548 1388 SUPERFAMILY Protein kinase-like (PK-like) 172 340 IPR011009 -
Lsi10g01548 1388 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 603 618 IPR031157 -
Lsi10g01548 1388 ProSiteProfiles Ankyrin repeat region circular profile. 71 102 - -
Lsi10g01548 1388 PRINTS GTP-binding elongation factor signature 610 618 IPR000795 GO:0003924|GO:0005525
Lsi10g01548 1388 PRINTS GTP-binding elongation factor signature 698 707 IPR000795 GO:0003924|GO:0005525
Lsi10g01548 1388 PRINTS GTP-binding elongation factor signature 566 579 IPR000795 GO:0003924|GO:0005525
Lsi10g01548 1388 PRINTS GTP-binding elongation factor signature 646 656 IPR000795 GO:0003924|GO:0005525
Lsi10g01548 1388 PRINTS GTP-binding elongation factor signature 662 673 IPR000795 GO:0003924|GO:0005525
Lsi10g01548 1388 TIGRFAM small_GTP: small GTP-binding protein domain 565 720 IPR005225 GO:0005525
Lsi10g01548 1388 Pfam Ankyrin repeats (3 copies) 43 131 IPR002110 GO:0005515
Lsi10g01548 1388 SUPERFAMILY EF-G C-terminal domain-like 1272 1383 IPR035647 -
Lsi10g01548 1388 Gene3D Translation factors 888 1029 - -
Lsi10g01548 1388 MobiDBLite consensus disorder prediction 369 396 - -
Lsi10g01548 1388 Pfam Elongation Factor G, domain III 1032 1094 IPR041095 -
Lsi10g01548 1388 SMART ANK_2a 104 133 IPR002110 GO:0005515
Lsi10g01548 1388 SMART ANK_2a 39 67 IPR002110 GO:0005515
Lsi10g01548 1388 SMART ANK_2a 71 100 IPR002110 GO:0005515
Lsi10g01548 1388 CDD EF2_II 920 1015 - -
Lsi10g01548 1388 SUPERFAMILY Translation proteins 887 1021 IPR009000 -
Lsi10g01548 1388 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 562 889 IPR000795 GO:0003924|GO:0005525
Lsi10g01548 1388 Pfam Protein tyrosine and serine/threonine kinase 466 531 IPR001245 GO:0004672|GO:0006468
Lsi10g01548 1388 Pfam Protein tyrosine and serine/threonine kinase 161 353 IPR001245 GO:0004672|GO:0006468
Lsi10g01548 1388 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 547 1387 - -
Lsi10g01548 1388 PANTHER - 547 1387 - -
Lsi10g01548 1388 SUPERFAMILY Ankyrin repeat 42 133 IPR036770 -
Lsi10g01548 1388 CDD eEF2_snRNP_like_C 1272 1350 - -
Lsi10g01548 1388 Pfam Elongation factor G C-terminus 1269 1356 IPR000640 -
Lsi10g01548 1388 Gene3D Transferase(Phosphotransferase) domain 1 232 376 - -
Lsi10g01548 1388 Pfam Elongation factor Tu GTP binding domain 562 887 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g01548 Lsi-Chr10:19887308 Lsi04g00391 Lsi-Chr4:3856559 4.15E-64 dispersed
Lsi10g01548 Lsi-Chr10:19887308 Lsi10g01549 Lsi-Chr10:19912230 0 tandem
Lsi01g02024 Lsi-Chr1:27712483 Lsi10g01548 Lsi-Chr10:19887308 7.20E-09 transposed
Lsi02g01496 Lsi-Chr2:20812378 Lsi10g01548 Lsi-Chr10:19887308 2.71E-23 transposed
Lsi02g01744 Lsi-Chr2:23125582 Lsi10g01548 Lsi-Chr10:19887308 6.99E-09 transposed
Lsi02g01917 Lsi-Chr2:25082695 Lsi10g01548 Lsi-Chr10:19887308 1.35E-128 transposed
Lsi03g00825 Lsi-Chr3:12720025 Lsi10g01548 Lsi-Chr10:19887308 4.78E-13 transposed
Lsi03g01655 Lsi-Chr3:27729530 Lsi10g01548 Lsi-Chr10:19887308 2.77E-20 transposed
Lsi03g01987 Lsi-Chr3:31245743 Lsi10g01548 Lsi-Chr10:19887308 7.42E-10 transposed
Lsi06g00376 Lsi-Chr6:4155816 Lsi10g01548 Lsi-Chr10:19887308 4.00E-08 transposed
Lsi08g01514 Lsi-Chr8:23221197 Lsi10g01548 Lsi-Chr10:19887308 1.43E-06 transposed
Lsi09g00015 Lsi-Chr9:125579 Lsi10g01548 Lsi-Chr10:19887308 3.54E-11 transposed
Lsi09g00390 Lsi-Chr9:4113982 Lsi10g01548 Lsi-Chr10:19887308 3.50E-45 transposed
Lsi09g00948 Lsi-Chr9:12206872 Lsi10g01548 Lsi-Chr10:19887308 2.17E-14 transposed
Lsi09g01681 Lsi-Chr9:25243882 Lsi10g01548 Lsi-Chr10:19887308 1.68E-16 transposed
Lsi10g01531 Lsi-Chr10:19703052 Lsi10g01548 Lsi-Chr10:19887308 0 transposed
Lsi11g00388 Lsi-Chr11:4000049 Lsi10g01548 Lsi-Chr10:19887308 0 transposed
Lsi11g01244 Lsi-Chr11:21077728 Lsi10g01548 Lsi-Chr10:19887308 1.64E-06 transposed
Lsi11g01419 Lsi-Chr11:22732132 Lsi10g01548 Lsi-Chr10:19887308 9.23E-21 transposed
Lsi01g00206 Lsi-Chr1:1936082 Lsi10g01548 Lsi-Chr10:19887308 3.22E-20 wgd
Lsi10g01548 Lsi-Chr10:19887308 Lsi02g00843 Lsi-Chr2:7891431 3.05E-23 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83998 PF00009 GTP_EFTU 6.30E-66 CL0023 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01548 K03234 - csv:101209544 1652.11