Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01549 ATGAGCAAATCACAAGGGCCTTCATCACTCAAAAGAAAAAGACCAGACTCAGCTCATGGCTCTGGAGGAGCTCTCATTGAGCATGAAAAAGTGCTCCATGATCTGATTTGCAGCAAACAAAGCATGGGGATTTGGATTGGAGACATTAGAAGAGAAACAAAATATGCTGACAGTGTGGTAACAAAATCACTCAAGTCCCTTCAAGCTAGAGGCCTGATTAAACTAGTTGAACACTATCAAAACAAAGGGAAGAAATTCTACCTGTCAAAAGATTTCGAACCATCGAAAGAACTGACTGGCGGTAATTGGTATAGCGACGGGAAGCTCGACCAAGAATACATCAATACTCTTAAAGGGTTCTGTGCTAGAATGATACAGAAGTTGAAGTTGGCTACAATTGAAGGAATTGTAGATTCTTTCAAAAAGAGTGGAGCATCCAAAGTGGACTTGTCTAAGGAGCAAATTGAAGAGATTGTAAATGCTTTGGTGTTGGACAATGAAGTTATGGAGGTAAAGAGCACTGGTTCAGGGGAGTTTGATTTTATTCCTGTTGGGAAGATTTGTTATAAGTTTGCTAAAGGAGGTGTTAAAGGGGAGCCCAAAACAGGAGCCATGGCTTCTATTCCTTGTGGAGCTCAAGGGGAGTGCCTTCCTTTGCTCTCCCTCCGTCGCTGCTCAGTTCATAGTCCTCTTATTCCTCGGAGGTTTTTGAAAGACTTGTCAAGATGGTCAGTGAAGTTTACAGCCGAGGAGCTCCGTCGGATTATGGACTTCAAGCATAACATCCGTAATATGTCTGTTATTGCTCACGTCGATCATGGGAAGTCGACACTTACAGACTCTCTTGTGGCTGCTGCGGGTATCATTGCACAAGAAGTTGCCGGTGATGTACGAATGACAGACACTCGCCAAGATGAGGCAGAGCGTGGTATCACCATTAAATCTACTGGAATCTCCCTCTACTATGAGATGTCTGATGAATCCTTGAAAAGTTACAAGGGAGAGAGACAGGGAAATGAGTATCTTATCAATCTTATTGATTCACCTGGGCACGTTGACTTCTCATCTGAGGTTACAGCTGCATTGCGTATTACTGATGGTGCCCTTGTTGTGGTGGATTGTGTCGAAGGTGTTTGTGTCCAAACAGAGACCGTGCTGCGTCAGGCTTTGGGAGAAAGGATTAGACCTGTCTTGACTGTTAACAAGATGGACAGGTGCTTCCTTGAACTCCAAGTGGATGGAGAAGAGGCTTATCAAACATTTCAGAGGGTCATAGAGAATGCCAATGTGATTATGGCCACATACGAGGATCCACTTCTTGGCGATGTTCAAGTGTACCCCGAGAAAGGAACAGTTGCTTTCTCTGCTGGTTTGCACGGTTGGGCGTTTACCCTGACTAACTTTGCCAAGATGTATGCCTCCAAGTTTGGAGTAGACGAGTCAAAGATGATGGAGAGACTTTGGGGTGAGAACTTCTTTGATCCTGCAACCAAGAAGTGGACCAGCAAGAACACTGGCTCTCCAACATGCAAGCGTGGGTTTGTCCAGTTCTGCTATGAACCCATCAAGCAGATCATTGCAACTTGCATGAACGATCAGAAGGATAAGCTATGGCCCATGTTGCAGAAGCTTGGAGTTGTCATGAAATCTGAAGAGAAGGATCTGATGAGCAAAGCATTGATGAAGCGGGTCATGCAAACATGGCTCCCAGCAAGCAGTGCTCTTTTGGAAATGATGATCTTTCATCTTCCATCCCCTGCCACGGCACAAAAGTACCGTGTTGAGAATTTGTACGAGGGTCCACTAGATGATGCATATGCCAGTGCCATTAGAAGTTGTGATCCTGAAGGACCTCTTATGCTTTATGTATCGAAGATGATTCCTGCATCAGACAAGGGGAGGTTCTTTGCCTTTGGACGTGTCTTCTCTGGGAAAGTTTCAACTGGTTTGAAAGTTAGAATTATGGGACCAAACTATGTTCCTGGAGAGAAGAAAGACTTGTATGTGAAGAGTGTCCAGAGAACTGTCATTTGGATGGGAAAGAAACAAGAAACAGTGGAGGATGTGCCTTGTGGTAACACTGTTGCCATGGTTGGGTTGGATCAATACATCACGAAGAATGCGACTCTGACAAACGAGAAGGAAGTTGATGCCCATCCAATTCGAGCCATGAAATTTTCTGTATCTCCTGTGGTGCGTGTGGCTGTTCAGTGCAAGGTGGCATCTGATCTTCCCAAGCTGGTGGAAGGCCTTAAACGTCTGGCGAAGTCAGATCCTATGGTCGTGTGTACCATGGAGGAATCTGGTGAGCACATTGTTGCTGGTGCTGGAGAACTACATCTTGAGATCTGTCTAAAGGATTTGCAAGATGACTTCATGGGTGGAGCTGAGATCATAAAATCCGACCCTGTTGTCTCTTTCCGTGAAACTGTCCTTGAGAGGTCATGCCGCACAGTGATGAGTAAATCCCCCAACAAACACAATCGTCTGTACATGGAAGCACGACCCATGGAGGAAGGATTGGCAGAGGCTATTGATGACGGGCGCATTGGACCACGGGATGACCCTAAAGTTAGGTCTAAAATCCTGTCGGAGGAGTACGGTTGGGACAAAGATCTTGCTAAGAAGATTTGGTGCTTTGGTCCTGAGACTACTGGCCCTAACATGGTGGTTGATATGTGTAAGGGAGTTCAATACCTGAATGAAATCAAGGATTCCGTTGTCGCCGGTTTCCAATGGGCGTCGAAAGAAGGTGCATTGGCTGAAGAAAACATGAGAGGCATCTGTTTTGAAGTTTGTGATGTGGTGCTTCACGCTGATGCCATCCACAGAGGAGGTGGTCAAGTCATTCCGACCGCTAGGAGGGTAATCTATGCTTCTCAACTGACTGCCAAACCAAGACTCCTCGAGCCAGTGTACCTAGTGGAGATTCAGGCTCCTGAGCAAGCTCTTGGTGGTATCTACAGTGTTCTTAACCAGAAGCGTGGGCACGTTTTTGAGGAAATGCAGAGGCCTGGTACCCCTCTTTACAACATCAAGGCGTATCTCCCTGTCATTGAGTCCTTCGGGTTCTCGAGCACATTGAGAGCTGCAACTTCCGGACAGGCATTCCCACAGTGTGTTTTCGACCATTGGGACATGATGTCGTCAGATCCATTGGAATCTGGTTCCCAGGCTGCGCAGTTAGTTGCAGATATCCGTAAGAGGAAGGGCTTGAAGGAACAAATGACTCCATTGTCCGAGTTTGAGGACAAGCTGTAG 3261 46.18 MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIRRETKYADSVVTKSLKSLQARGLIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDQEYINTLKGFCARMIQKLKLATIEGIVDSFKKSGASKVDLSKEQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKFAKGGVKGEPKTGAMASIPCGAQGECLPLLSLRRCSVHSPLIPRRFLKDLSRWSVKFTAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMSDESLKSYKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTSKNTGSPTCKRGFVQFCYEPIKQIIATCMNDQKDKLWPMLQKLGVVMKSEEKDLMSKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYASAIRSCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTMEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLERSCRTVMSKSPNKHNRLYMEARPMEEGLAEAIDDGRIGPRDDPKVRSKILSEEYGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLESGSQAAQLVADIRKRKGLKEQMTPLSEFEDKL 1086
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19912230 19923077 - Lsi10G015490.1 Lsi10g01549 673106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01549 1086 Pfam Elongation factor G, domain IV 854 965 IPR005517 GO:0005525
Lsi10g01549 1086 CDD aeEF2_snRNP_like_IV 802 974 - -
Lsi10g01549 1086 CDD EF2 263 473 - -
Lsi10g01549 1086 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 247 584 IPR027417 -
Lsi10g01549 1086 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 245 1085 - -
Lsi10g01549 1086 PANTHER - 245 1085 - -
Lsi10g01549 1086 CDD eEF2_snRNP_like_C 970 1048 - -
Lsi10g01549 1086 Pfam Elongation factor G C-terminus 967 1054 IPR000640 -
Lsi10g01549 1086 Gene3D Translation factors 586 727 - -
Lsi10g01549 1086 SMART EFG_C_a 967 1056 IPR000640 -
Lsi10g01549 1086 CDD EF2_II 618 713 - -
Lsi10g01549 1086 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 301 316 IPR031157 -
Lsi10g01549 1086 Pfam Elongation factor Tu GTP binding domain 260 585 IPR000795 GO:0003924|GO:0005525
Lsi10g01549 1086 Gene3D - 246 480 IPR027417 -
Lsi10g01549 1086 MobiDBLite consensus disorder prediction 1 22 - -
Lsi10g01549 1086 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 260 587 IPR000795 GO:0003924|GO:0005525
Lsi10g01549 1086 CDD EF2_snRNP_III 730 802 - -
Lsi10g01549 1086 TIGRFAM small_GTP: small GTP-binding protein domain 263 419 IPR005225 GO:0005525
Lsi10g01549 1086 SMART EFG_IV_2 849 965 IPR005517 GO:0005525
Lsi10g01549 1086 Gene3D - 966 1086 - -
Lsi10g01549 1086 PRINTS GTP-binding elongation factor signature 264 277 IPR000795 GO:0003924|GO:0005525
Lsi10g01549 1086 PRINTS GTP-binding elongation factor signature 344 354 IPR000795 GO:0003924|GO:0005525
Lsi10g01549 1086 PRINTS GTP-binding elongation factor signature 308 316 IPR000795 GO:0003924|GO:0005525
Lsi10g01549 1086 PRINTS GTP-binding elongation factor signature 360 371 IPR000795 GO:0003924|GO:0005525
Lsi10g01549 1086 PRINTS GTP-binding elongation factor signature 396 405 IPR000795 GO:0003924|GO:0005525
Lsi10g01549 1086 Pfam Elongation Factor G, domain III 730 792 IPR041095 -
Lsi10g01549 1086 SUPERFAMILY Winged helix DNA-binding domain 28 89 IPR036390 -
Lsi10g01549 1086 Pfam Elongation factor Tu domain 2 637 710 IPR004161 GO:0005525
Lsi10g01549 1086 SUPERFAMILY Ribosomal protein S5 domain 2-like 805 969 IPR020568 -
Lsi10g01549 1086 Gene3D - 813 965 IPR014721 -
Lsi10g01549 1086 Gene3D - 27 90 IPR036388 -
Lsi10g01549 1086 Pfam RNA polymerase Rpc34 subunit 27 127 IPR007832 GO:0005666|GO:0006383
Lsi10g01549 1086 SUPERFAMILY Translation proteins 585 719 IPR009000 -
Lsi10g01549 1086 SUPERFAMILY EF-G C-terminal domain-like 970 1081 IPR035647 -
Lsi10g01549 1086 Gene3D Elongation Factor G (Translational Gtpase), domain 3 729 806 - -
Lsi10g01549 1086 SUPERFAMILY EF-G C-terminal domain-like 727 803 IPR035647 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01419 Lsi-Chr7:20712783 Lsi10g01549 Lsi-Chr10:19912230 4.14E-96 dispersed
Lsi10g01531 Lsi-Chr10:19703052 Lsi10g01549 Lsi-Chr10:19912230 0 dispersed
Lsi10g01549 Lsi-Chr10:19912230 Lsi11g00388 Lsi-Chr11:4000049 0 dispersed
Lsi10g01548 Lsi-Chr10:19887308 Lsi10g01549 Lsi-Chr10:19912230 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01549 K03234 - csv:101208886 1650.57