Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi10g01549 | ATGAGCAAATCACAAGGGCCTTCATCACTCAAAAGAAAAAGACCAGACTCAGCTCATGGCTCTGGAGGAGCTCTCATTGAGCATGAAAAAGTGCTCCATGATCTGATTTGCAGCAAACAAAGCATGGGGATTTGGATTGGAGACATTAGAAGAGAAACAAAATATGCTGACAGTGTGGTAACAAAATCACTCAAGTCCCTTCAAGCTAGAGGCCTGATTAAACTAGTTGAACACTATCAAAACAAAGGGAAGAAATTCTACCTGTCAAAAGATTTCGAACCATCGAAAGAACTGACTGGCGGTAATTGGTATAGCGACGGGAAGCTCGACCAAGAATACATCAATACTCTTAAAGGGTTCTGTGCTAGAATGATACAGAAGTTGAAGTTGGCTACAATTGAAGGAATTGTAGATTCTTTCAAAAAGAGTGGAGCATCCAAAGTGGACTTGTCTAAGGAGCAAATTGAAGAGATTGTAAATGCTTTGGTGTTGGACAATGAAGTTATGGAGGTAAAGAGCACTGGTTCAGGGGAGTTTGATTTTATTCCTGTTGGGAAGATTTGTTATAAGTTTGCTAAAGGAGGTGTTAAAGGGGAGCCCAAAACAGGAGCCATGGCTTCTATTCCTTGTGGAGCTCAAGGGGAGTGCCTTCCTTTGCTCTCCCTCCGTCGCTGCTCAGTTCATAGTCCTCTTATTCCTCGGAGGTTTTTGAAAGACTTGTCAAGATGGTCAGTGAAGTTTACAGCCGAGGAGCTCCGTCGGATTATGGACTTCAAGCATAACATCCGTAATATGTCTGTTATTGCTCACGTCGATCATGGGAAGTCGACACTTACAGACTCTCTTGTGGCTGCTGCGGGTATCATTGCACAAGAAGTTGCCGGTGATGTACGAATGACAGACACTCGCCAAGATGAGGCAGAGCGTGGTATCACCATTAAATCTACTGGAATCTCCCTCTACTATGAGATGTCTGATGAATCCTTGAAAAGTTACAAGGGAGAGAGACAGGGAAATGAGTATCTTATCAATCTTATTGATTCACCTGGGCACGTTGACTTCTCATCTGAGGTTACAGCTGCATTGCGTATTACTGATGGTGCCCTTGTTGTGGTGGATTGTGTCGAAGGTGTTTGTGTCCAAACAGAGACCGTGCTGCGTCAGGCTTTGGGAGAAAGGATTAGACCTGTCTTGACTGTTAACAAGATGGACAGGTGCTTCCTTGAACTCCAAGTGGATGGAGAAGAGGCTTATCAAACATTTCAGAGGGTCATAGAGAATGCCAATGTGATTATGGCCACATACGAGGATCCACTTCTTGGCGATGTTCAAGTGTACCCCGAGAAAGGAACAGTTGCTTTCTCTGCTGGTTTGCACGGTTGGGCGTTTACCCTGACTAACTTTGCCAAGATGTATGCCTCCAAGTTTGGAGTAGACGAGTCAAAGATGATGGAGAGACTTTGGGGTGAGAACTTCTTTGATCCTGCAACCAAGAAGTGGACCAGCAAGAACACTGGCTCTCCAACATGCAAGCGTGGGTTTGTCCAGTTCTGCTATGAACCCATCAAGCAGATCATTGCAACTTGCATGAACGATCAGAAGGATAAGCTATGGCCCATGTTGCAGAAGCTTGGAGTTGTCATGAAATCTGAAGAGAAGGATCTGATGAGCAAAGCATTGATGAAGCGGGTCATGCAAACATGGCTCCCAGCAAGCAGTGCTCTTTTGGAAATGATGATCTTTCATCTTCCATCCCCTGCCACGGCACAAAAGTACCGTGTTGAGAATTTGTACGAGGGTCCACTAGATGATGCATATGCCAGTGCCATTAGAAGTTGTGATCCTGAAGGACCTCTTATGCTTTATGTATCGAAGATGATTCCTGCATCAGACAAGGGGAGGTTCTTTGCCTTTGGACGTGTCTTCTCTGGGAAAGTTTCAACTGGTTTGAAAGTTAGAATTATGGGACCAAACTATGTTCCTGGAGAGAAGAAAGACTTGTATGTGAAGAGTGTCCAGAGAACTGTCATTTGGATGGGAAAGAAACAAGAAACAGTGGAGGATGTGCCTTGTGGTAACACTGTTGCCATGGTTGGGTTGGATCAATACATCACGAAGAATGCGACTCTGACAAACGAGAAGGAAGTTGATGCCCATCCAATTCGAGCCATGAAATTTTCTGTATCTCCTGTGGTGCGTGTGGCTGTTCAGTGCAAGGTGGCATCTGATCTTCCCAAGCTGGTGGAAGGCCTTAAACGTCTGGCGAAGTCAGATCCTATGGTCGTGTGTACCATGGAGGAATCTGGTGAGCACATTGTTGCTGGTGCTGGAGAACTACATCTTGAGATCTGTCTAAAGGATTTGCAAGATGACTTCATGGGTGGAGCTGAGATCATAAAATCCGACCCTGTTGTCTCTTTCCGTGAAACTGTCCTTGAGAGGTCATGCCGCACAGTGATGAGTAAATCCCCCAACAAACACAATCGTCTGTACATGGAAGCACGACCCATGGAGGAAGGATTGGCAGAGGCTATTGATGACGGGCGCATTGGACCACGGGATGACCCTAAAGTTAGGTCTAAAATCCTGTCGGAGGAGTACGGTTGGGACAAAGATCTTGCTAAGAAGATTTGGTGCTTTGGTCCTGAGACTACTGGCCCTAACATGGTGGTTGATATGTGTAAGGGAGTTCAATACCTGAATGAAATCAAGGATTCCGTTGTCGCCGGTTTCCAATGGGCGTCGAAAGAAGGTGCATTGGCTGAAGAAAACATGAGAGGCATCTGTTTTGAAGTTTGTGATGTGGTGCTTCACGCTGATGCCATCCACAGAGGAGGTGGTCAAGTCATTCCGACCGCTAGGAGGGTAATCTATGCTTCTCAACTGACTGCCAAACCAAGACTCCTCGAGCCAGTGTACCTAGTGGAGATTCAGGCTCCTGAGCAAGCTCTTGGTGGTATCTACAGTGTTCTTAACCAGAAGCGTGGGCACGTTTTTGAGGAAATGCAGAGGCCTGGTACCCCTCTTTACAACATCAAGGCGTATCTCCCTGTCATTGAGTCCTTCGGGTTCTCGAGCACATTGAGAGCTGCAACTTCCGGACAGGCATTCCCACAGTGTGTTTTCGACCATTGGGACATGATGTCGTCAGATCCATTGGAATCTGGTTCCCAGGCTGCGCAGTTAGTTGCAGATATCCGTAAGAGGAAGGGCTTGAAGGAACAAATGACTCCATTGTCCGAGTTTGAGGACAAGCTGTAG | 3261 | 46.18 | MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIRRETKYADSVVTKSLKSLQARGLIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDQEYINTLKGFCARMIQKLKLATIEGIVDSFKKSGASKVDLSKEQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKFAKGGVKGEPKTGAMASIPCGAQGECLPLLSLRRCSVHSPLIPRRFLKDLSRWSVKFTAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMSDESLKSYKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTSKNTGSPTCKRGFVQFCYEPIKQIIATCMNDQKDKLWPMLQKLGVVMKSEEKDLMSKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYASAIRSCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTMEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLERSCRTVMSKSPNKHNRLYMEARPMEEGLAEAIDDGRIGPRDDPKVRSKILSEEYGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLESGSQAAQLVADIRKRKGLKEQMTPLSEFEDKL | 1086 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 19912230 | 19923077 | - | Lsi10G015490.1 | Lsi10g01549 | 673106 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi10g01549 | 1086 | Pfam | Elongation factor G, domain IV | 854 | 965 | IPR005517 | GO:0005525 | |
Lsi10g01549 | 1086 | CDD | aeEF2_snRNP_like_IV | 802 | 974 | - | - | |
Lsi10g01549 | 1086 | CDD | EF2 | 263 | 473 | - | - | |
Lsi10g01549 | 1086 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 247 | 584 | IPR027417 | - | |
Lsi10g01549 | 1086 | PANTHER | TRANSLATION ELONGATION FACTOR-RELATED | 245 | 1085 | - | - | |
Lsi10g01549 | 1086 | PANTHER | - | 245 | 1085 | - | - | |
Lsi10g01549 | 1086 | CDD | eEF2_snRNP_like_C | 970 | 1048 | - | - | |
Lsi10g01549 | 1086 | Pfam | Elongation factor G C-terminus | 967 | 1054 | IPR000640 | - | |
Lsi10g01549 | 1086 | Gene3D | Translation factors | 586 | 727 | - | - | |
Lsi10g01549 | 1086 | SMART | EFG_C_a | 967 | 1056 | IPR000640 | - | |
Lsi10g01549 | 1086 | CDD | EF2_II | 618 | 713 | - | - | |
Lsi10g01549 | 1086 | ProSitePatterns | Translational (tr)-type guanine nucleotide-binding (G) domain signature. | 301 | 316 | IPR031157 | - | |
Lsi10g01549 | 1086 | Pfam | Elongation factor Tu GTP binding domain | 260 | 585 | IPR000795 | GO:0003924|GO:0005525 | |
Lsi10g01549 | 1086 | Gene3D | - | 246 | 480 | IPR027417 | - | |
Lsi10g01549 | 1086 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Lsi10g01549 | 1086 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 260 | 587 | IPR000795 | GO:0003924|GO:0005525 | |
Lsi10g01549 | 1086 | CDD | EF2_snRNP_III | 730 | 802 | - | - | |
Lsi10g01549 | 1086 | TIGRFAM | small_GTP: small GTP-binding protein domain | 263 | 419 | IPR005225 | GO:0005525 | |
Lsi10g01549 | 1086 | SMART | EFG_IV_2 | 849 | 965 | IPR005517 | GO:0005525 | |
Lsi10g01549 | 1086 | Gene3D | - | 966 | 1086 | - | - | |
Lsi10g01549 | 1086 | PRINTS | GTP-binding elongation factor signature | 264 | 277 | IPR000795 | GO:0003924|GO:0005525 | |
Lsi10g01549 | 1086 | PRINTS | GTP-binding elongation factor signature | 344 | 354 | IPR000795 | GO:0003924|GO:0005525 | |
Lsi10g01549 | 1086 | PRINTS | GTP-binding elongation factor signature | 308 | 316 | IPR000795 | GO:0003924|GO:0005525 | |
Lsi10g01549 | 1086 | PRINTS | GTP-binding elongation factor signature | 360 | 371 | IPR000795 | GO:0003924|GO:0005525 | |
Lsi10g01549 | 1086 | PRINTS | GTP-binding elongation factor signature | 396 | 405 | IPR000795 | GO:0003924|GO:0005525 | |
Lsi10g01549 | 1086 | Pfam | Elongation Factor G, domain III | 730 | 792 | IPR041095 | - | |
Lsi10g01549 | 1086 | SUPERFAMILY | Winged helix DNA-binding domain | 28 | 89 | IPR036390 | - | |
Lsi10g01549 | 1086 | Pfam | Elongation factor Tu domain 2 | 637 | 710 | IPR004161 | GO:0005525 | |
Lsi10g01549 | 1086 | SUPERFAMILY | Ribosomal protein S5 domain 2-like | 805 | 969 | IPR020568 | - | |
Lsi10g01549 | 1086 | Gene3D | - | 813 | 965 | IPR014721 | - | |
Lsi10g01549 | 1086 | Gene3D | - | 27 | 90 | IPR036388 | - | |
Lsi10g01549 | 1086 | Pfam | RNA polymerase Rpc34 subunit | 27 | 127 | IPR007832 | GO:0005666|GO:0006383 | |
Lsi10g01549 | 1086 | SUPERFAMILY | Translation proteins | 585 | 719 | IPR009000 | - | |
Lsi10g01549 | 1086 | SUPERFAMILY | EF-G C-terminal domain-like | 970 | 1081 | IPR035647 | - | |
Lsi10g01549 | 1086 | Gene3D | Elongation Factor G (Translational Gtpase), domain 3 | 729 | 806 | - | - | |
Lsi10g01549 | 1086 | SUPERFAMILY | EF-G C-terminal domain-like | 727 | 803 | IPR035647 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi07g01419 | Lsi-Chr7:20712783 | Lsi10g01549 | Lsi-Chr10:19912230 | 4.14E-96 | dispersed | |
Lsi10g01531 | Lsi-Chr10:19703052 | Lsi10g01549 | Lsi-Chr10:19912230 | 0 | dispersed | |
Lsi10g01549 | Lsi-Chr10:19912230 | Lsi11g00388 | Lsi-Chr11:4000049 | 0 | dispersed | |
Lsi10g01548 | Lsi-Chr10:19887308 | Lsi10g01549 | Lsi-Chr10:19912230 | 0 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi10g01549 | K03234 | - | csv:101208886 | 1650.57 |