Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01565 ATGCGGCGAGGCAGACCCTCAGATCCATTTACAGCTACAGAAATACCCAAATCGACCATTCAGCCTGAAAATACTCTCAAAGAGATCCGATACAGAGGCGTTCGAAAGCGTCCTTGGGGTAGATACGCGGCTGAGATCAGAGATCCCTGGAAAAAAACTAGGGTTTGGCTCGGTACTTTCGATTCCGCAGAAGAGGCTGCTCGGGCCTACGATCATGCCGCTCGGACCCTCCGTGGTGCTAAGGCCAAAACTAACTTCCCTTTACATCCATCGACGATTCCCATTCAACAACAAATTCCTTTCTACCAATCGCCGCCGGATTTGCACGATTCGAATGGATTTGGTGGTAAGATTGAGTGTGTTCAGGCTAATAGGCCTACATCGAGCAGTTTGAGTTCTACCGTGGAGTCGTTTAGTGGGCCGCGGATTTCTAACCCTTTGTCGTCGCTGTCCATGGTTCGTCGGAGGCCGGTGCAGCCAGTTTCGCCGGATGACTGTCATAGCGACTGTGATTCGTCTTCCTCTGTTGTTGATGATGATGAGGTCTGTGTGCTTGCTTCTTTCCGTAGAGCTTTGCCCTTTGATCTTAACTTACCGCCTCCAATGGACGTCGTGGATTTAACCGGTGATGATCTTCAAGCTACTGCTTTATGCCTCTGA 660 50.15 MRRGRPSDPFTATEIPKSTIQPENTLKEIRYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDSAEEAARAYDHAARTLRGAKAKTNFPLHPSTIPIQQQIPFYQSPPDLHDSNGFGGKIECVQANRPTSSSLSSTVESFSGPRISNPLSSLSMVRRRPVQPVSPDDCHSDCDSSSSVVDDDEVCVLASFRRALPFDLNLPPPMDVVDLTGDDLQATALCL 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 20065741 20066400 - Lsi10G015650.1 Lsi10g01565 673122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01565 219 MobiDBLite consensus disorder prediction 1 24 - -
Lsi10g01565 219 SUPERFAMILY DNA-binding domain 30 88 IPR016177 GO:0003677
Lsi10g01565 219 CDD AP2 30 87 IPR001471 GO:0003700|GO:0006355
Lsi10g01565 219 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 26 194 - -
Lsi10g01565 219 Gene3D AP2/ERF domain 29 89 IPR036955 GO:0003700|GO:0006355
Lsi10g01565 219 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Lsi10g01565 219 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
Lsi10g01565 219 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Lsi10g01565 219 Pfam AP2 domain 30 79 IPR001471 GO:0003700|GO:0006355
Lsi10g01565 219 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 26 194 - -
Lsi10g01565 219 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi10g01565 Lsi11g01667 CCT
Lsi10g01565 Lsi11g01667 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00002 Lsi-Chr4:25754 Lsi10g01565 Lsi-Chr10:20065741 1.97E-35 dispersed
Lsi04g02049 Lsi-Chr4:27600605 Lsi10g01565 Lsi-Chr10:20065741 8.32E-35 dispersed
Lsi08g01644 Lsi-Chr8:24303172 Lsi10g01565 Lsi-Chr10:20065741 2.91E-28 dispersed
Lsi10g01565 Lsi-Chr10:20065741 Lsi11g01709 Lsi-Chr11:25236694 4.61E-33 dispersed
Lsi05g00571 Lsi-Chr5:7088026 Lsi10g01565 Lsi-Chr10:20065741 9.47E-50 transposed
Lsi09g00113 Lsi-Chr9:1063443 Lsi10g01565 Lsi-Chr10:20065741 1.85E-18 transposed
Lsi10g01565 Lsi-Chr10:20065741 Lsi11g01667 Lsi-Chr11:24921770 1.25E-67 wgd
Lsi10g01565 Lsi-Chr10:20065741 Lsi02g00774 Lsi-Chr2:7111309 7.31E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26112 PF00847 AP2 8.90E-14 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01565 K09286 - csv:101221703 399.823