Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01569 ATGAAATTCGAAGAGCAGAACCTGAAGCATCAGTCTGAACAGATGTGCAGGACTATTGAGGTGGATACAATTGATCACCATCGCACTATTTCGTCGCTAGTCGTAATGGAAGCTTCCGAAGACTGCGACAGAGATGGTGACGGCCTCTATATTCCTCCTCTCAACTTTTCCATGGTTGATAATGGCATTTTCCGCTCCGGTTTCCCTGACTCTGCTAACTTCTCCTTCCTCCAAACCCTAGGTCTCCGTTCCATTATATGTTTATGTCCGGAGCCGTATCCGGAACACAACATGGAGTTCCTCAAGTCGAACGGGATTAGATTGTTTCAATTTGGAATCGAAAGCTATAAGGAGCCTTTCGTGAACATCCCAGATGATATGATTCGTGAAGCACTGAAAGTTGTCCTTGACGATAGAAATCATCCAGTTCTCATACATTGCAAAAGAGGAAAGCATCGGACAGGTTGTCTTGTGGGATGCCTGAGAAAAGTGCAGAGGTGGTGCCTCACTTCTGTGTTTGATGAGTACCAGAGATTTGCAGCTGCAAAAGCAAGAATTTCAGACCAGAGGTTCATGGAGTTGTTTGATATCTCTGGCTTGAAGCATCTTCCCATGTCATTCTCATGCTCAAAATAG 636 44.81 MKFEEQNLKHQSEQMCRTIEVDTIDHHRTISSLVVMEASEDCDRDGDGLYIPPLNFSMVDNGIFRSGFPDSANFSFLQTLGLRSIICLCPEPYPEHNMEFLKSNGIRLFQFGIESYKEPFVNIPDDMIREALKVVLDDRNHPVLIHCKRGKHRTGCLVGCLRKVQRWCLTSVFDEYQRFAAAKARISDQRFMELFDISGLKHLPMSFSCSK 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 20151968 20155255 + Lsi10G015690.1 Lsi10g01569 673126

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01569 211 ProSitePatterns Tyrosine specific protein phosphatases active site. 145 155 IPR016130 GO:0016311|GO:0016791
Lsi10g01569 211 CDD PFA-DSP_Siw14 49 196 - -
Lsi10g01569 211 Gene3D Protein tyrosine phosphatase superfamily 50 199 IPR029021 -
Lsi10g01569 211 ProSiteProfiles Dual specificity protein phosphatase domain profile. 55 209 IPR020422 GO:0006470|GO:0008138
Lsi10g01569 211 PANTHER PHOSPHOTYROSINE PROTEIN PHOSPHATASES SUPERFAMILY PROTEIN ISOFORM 1 4 210 - -
Lsi10g01569 211 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 118 158 IPR000387 GO:0016311|GO:0016791
Lsi10g01569 211 PANTHER TYROSINE-PROTEIN PHOSPHATASE 4 210 - -
Lsi10g01569 211 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 51 197 IPR029021 -
Lsi10g01569 211 Pfam Tyrosine phosphatase family 50 200 IPR004861 -
Lsi10g01569 211 PRINTS Plant and fungal dual specificity phosphatase signature 123 137 IPR020428 GO:0016791
Lsi10g01569 211 PRINTS Plant and fungal dual specificity phosphatase signature 50 67 IPR020428 GO:0016791
Lsi10g01569 211 PRINTS Plant and fungal dual specificity phosphatase signature 87 100 IPR020428 GO:0016791
Lsi10g01569 211 PRINTS Plant and fungal dual specificity phosphatase signature 106 120 IPR020428 GO:0016791
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01569 K18045 SIW14, OCA3; tyrosine-protein phosphatase SIW14 [EC:3.1.3.48] - csv:101222170 393.275
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi10g01569 Lsi11g01669 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00702 Lsi-Chr6:11192637 Lsi10g01569 Lsi-Chr10:20151968 1.19E-82 transposed
Lsi10g01569 Lsi-Chr10:20151968 Lsi11g01669 Lsi-Chr11:24952220 1.68E-84 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g443 . . . . Bpe12g00275 Bpe15g00169 Bma03g01308 Bma08g00533 . . Cma02g00065 Cma20g00235 Car02g00052 Car20g00205 Sed05g1894 . . Bhi05g02097 Tan02g0134 Cmetu05g0487 . . . . Cla02g01771 Cam02g1872 Cec02g1896 Cco02g1936 Clacu02g1854 Cmu02g1800 . . Cone10ag1396 Cone8ag1552 . Lsi10g01569 . Chy11g00950 . Blo04g01214 Blo13g00337 . Bda15g00865 Bpe14g00621 . . . Sed01g0708 Cmo02g00063 Cmo20g00254 . . Car11g01620 . Cpe16g00749 . Bhi10g01060 Tan05g0690 Cmetu11g0212 . Hepe08g0587 . . . . . . . . . Lsi11g01669 Csa06g02393 . Cme11g01505
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi01g00954 . 33 601 Protein tyrosine phosphatase (PTP) family AT3G50110 51.3 2.6e-148 522.7
Lsi03g01516 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 3.1e-158 555.1
Lsi08g00665 . 3 859 Protein tyrosine phosphatase (PTP) family AT3G10550 61.0 4.5e-289 990.7
Lsi08g00665 . 4 859 Protein tyrosine phosphatase (PTP) family AT5G04540 58.9 6.3e-275 943.7
Lsi06g01160 . 3 1212 Protein tyrosine phosphatase (PTP) family AT5G58160 54.5 1.5e-288 989.6
Lsi06g01445 CCT 21 376 Protein tyrosine phosphatase (PTP) family AT5G58160 62.9 1.2e-115 415.2
Lsi06g01444 . 1 318 Protein tyrosine phosphatase (PTP) family AT5G58160 60.1 5.3e-108 389.8
Lsi02g01949 . 90 390 Protein tyrosine phosphatase (PTP) family AT1G71860 62.6 6.4e-109 391.0
Lsi06g01680 . 7 913 Protein tyrosine phosphatase (PTP) family AT5G23720 64.8 0.0e+00 1092.8
Lsi11g01661 . 1 192 Protein tyrosine phosphatase (PTP) family AT2G04550 67.2 4.2e-67 251.1
Lsi04g00121 . 96 317 Protein tyrosine phosphatase (PTP) family AT3G52180 58.0 1.2e-84 310.1
Lsi04g01038 . 29 275 Protein tyrosine phosphatase (PTP) family AT3G10940 72.8 8.5e-107 383.6
Lsi03g01385 . 139 540 Protein tyrosine phosphatase (PTP) family AT3G01510 72.4 5.2e-183 637.5
Lsi10g01569 CCT 9 210 Protein tyrosine phosphatase (PTP) family AT2G32960 59.9 1.0e-74 276.9
Lsi11g01669 CCT 28 213 Protein tyrosine phosphatase (PTP) family AT2G32960 56.5 3.0e-58 222.2
Lsi06g00702 . 44 215 Protein tyrosine phosphatase (PTP) family AT2G32960 51.5 5.3e-55 211.5
Lsi11g00210 . 20 263 Protein tyrosine phosphatase (PTP) family AT2G35680 55.9 1.3e-80 297.0
Lsi07g01277 . 23 282 Protein tyrosine phosphatase (PTP) family AT2G35680 57.3 6.2e-80 294.7
Lsi11g00210 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 9.5e-46 180.3
Lsi10g01569 CCT 18 211 Protein tyrosine phosphatase (PTP) family AT4G03960 71.6 7.6e-78 287.0
Lsi06g00702 . 58 215 Protein tyrosine phosphatase (PTP) family AT4G03960 63.3 1.4e-58 223.0
Lsi11g01669 CCT 37 214 Protein tyrosine phosphatase (PTP) family AT4G03960 55.8 1.8e-55 212.6
Lsi06g00702 . 52 241 Protein tyrosine phosphatase (PTP) family AT3G02800 70.5 2.4e-79 292.0
Lsi10g01569 CCT 40 206 Protein tyrosine phosphatase (PTP) family AT3G02800 61.7 1.3e-56 216.5
Lsi04g00858 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 66.1 2.5e-63 240.7
Lsi03g01516 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 3.1e-158 555.1
Lsi03g00522 . 14 730 Protein tyrosine phosphatase (PTP) family AT3G19420 52.3 1.4e-191 666.4
Lsi01g00954 . 31 601 Protein tyrosine phosphatase (PTP) family AT3G19420 50.7 7.1e-159 557.8
Lsi01g00954 . 33 601 Protein tyrosine phosphatase (PTP) family AT3G50110 51.3 2.6e-148 522.7
Lsi06g01160 . 3 1212 Protein tyrosine phosphatase (PTP) family AT5G58160 54.5 1.5e-288 989.6
Lsi06g01445 CCT 21 376 Protein tyrosine phosphatase (PTP) family AT5G58160 62.9 1.2e-115 415.2
Lsi06g01444 . 1 318 Protein tyrosine phosphatase (PTP) family AT5G58160 60.1 5.3e-108 389.8
Lsi08g00665 . 3 859 Protein tyrosine phosphatase (PTP) family AT3G10550 61.0 4.5e-289 990.7
Lsi08g00665 . 4 859 Protein tyrosine phosphatase (PTP) family AT5G04540 58.9 6.3e-275 943.7
Lsi10g01181 . 66 248 Protein tyrosine phosphatase (PTP) family AT3G44620 65.0 3.8e-69 258.5
Lsi07g01214 . 22 318 Protein tyrosine phosphatase (PTP) family AT2G35320 62.0 2.0e-109 392.5
Lsi01g01523 . 1 669 Protein tyrosine phosphatase (PTP) family AT3G09100 60.6 1.1e-245 846.3
Lsi01g01523 . 5 669 Protein tyrosine phosphatase (PTP) family AT5G01290 56.6 1.6e-220 762.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001007 2 3 3 4 3 2 4 2 2 2 2 2 4 2 2 4 2 4 4 1 2 2 2 2 2 2 2 7 6 2 83