Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01569 ATGAAATTCGAAGAGCAGAACCTGAAGCATCAGTCTGAACAGATGTGCAGGACTATTGAGGTGGATACAATTGATCACCATCGCACTATTTCGTCGCTAGTCGTAATGGAAGCTTCCGAAGACTGCGACAGAGATGGTGACGGCCTCTATATTCCTCCTCTCAACTTTTCCATGGTTGATAATGGCATTTTCCGCTCCGGTTTCCCTGACTCTGCTAACTTCTCCTTCCTCCAAACCCTAGGTCTCCGTTCCATTATATGTTTATGTCCGGAGCCGTATCCGGAACACAACATGGAGTTCCTCAAGTCGAACGGGATTAGATTGTTTCAATTTGGAATCGAAAGCTATAAGGAGCCTTTCGTGAACATCCCAGATGATATGATTCGTGAAGCACTGAAAGTTGTCCTTGACGATAGAAATCATCCAGTTCTCATACATTGCAAAAGAGGAAAGCATCGGACAGGTTGTCTTGTGGGATGCCTGAGAAAAGTGCAGAGGTGGTGCCTCACTTCTGTGTTTGATGAGTACCAGAGATTTGCAGCTGCAAAAGCAAGAATTTCAGACCAGAGGTTCATGGAGTTGTTTGATATCTCTGGCTTGAAGCATCTTCCCATGTCATTCTCATGCTCAAAATAG 636 44.81 MKFEEQNLKHQSEQMCRTIEVDTIDHHRTISSLVVMEASEDCDRDGDGLYIPPLNFSMVDNGIFRSGFPDSANFSFLQTLGLRSIICLCPEPYPEHNMEFLKSNGIRLFQFGIESYKEPFVNIPDDMIREALKVVLDDRNHPVLIHCKRGKHRTGCLVGCLRKVQRWCLTSVFDEYQRFAAAKARISDQRFMELFDISGLKHLPMSFSCSK 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 20151968 20155255 + Lsi10G015690.1 Lsi10g01569 673126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01569 211 ProSitePatterns Tyrosine specific protein phosphatases active site. 145 155 IPR016130 GO:0016311|GO:0016791
Lsi10g01569 211 CDD PFA-DSP_Siw14 49 196 - -
Lsi10g01569 211 Gene3D Protein tyrosine phosphatase superfamily 50 199 IPR029021 -
Lsi10g01569 211 ProSiteProfiles Dual specificity protein phosphatase domain profile. 55 209 IPR020422 GO:0006470|GO:0008138
Lsi10g01569 211 PANTHER PHOSPHOTYROSINE PROTEIN PHOSPHATASES SUPERFAMILY PROTEIN ISOFORM 1 4 210 - -
Lsi10g01569 211 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 118 158 IPR000387 GO:0016311|GO:0016791
Lsi10g01569 211 PANTHER TYROSINE-PROTEIN PHOSPHATASE 4 210 - -
Lsi10g01569 211 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 51 197 IPR029021 -
Lsi10g01569 211 Pfam Tyrosine phosphatase family 50 200 IPR004861 -
Lsi10g01569 211 PRINTS Plant and fungal dual specificity phosphatase signature 123 137 IPR020428 GO:0016791
Lsi10g01569 211 PRINTS Plant and fungal dual specificity phosphatase signature 50 67 IPR020428 GO:0016791
Lsi10g01569 211 PRINTS Plant and fungal dual specificity phosphatase signature 87 100 IPR020428 GO:0016791
Lsi10g01569 211 PRINTS Plant and fungal dual specificity phosphatase signature 106 120 IPR020428 GO:0016791
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi10g01569 Lsi11g01669 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00702 Lsi-Chr6:11192637 Lsi10g01569 Lsi-Chr10:20151968 1.19E-82 transposed
Lsi10g01569 Lsi-Chr10:20151968 Lsi11g01669 Lsi-Chr11:24952220 1.68E-84 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01569 K18045 - csv:101222170 393.275