Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi10g01592 | ATGGAGGATCAGCGAGATGATGTTGCACCATCAGAGCAAGGGCCTTCCAATGCTTCCTGGTGGTCTTCTGATTTCGAGGAGAAATTTGGATCTGTTTCTTTGGGCCCTCGGGAAGATATTGTAAGTGAAAAGGAAGAGATCATCAATTCTGACCAAGATGTGTTGTTGTCGCCTCAGAGAGCTTCTCAAATTCTTTGGCGAACTGGAATGCTTTGTGAACCAATTCCAGATGGGTTCTATTCTATTATTCCGGATAAAAGGCTAAAAGAGCAGTTCCACAGTATTCCTTCGCTGGATGAGCTTCGTGCTTTGGAGGCCGAAGGCTACAGAAACGATGTTATTCTTGTGGAGACAGAGAAAGATAAAAAACTTTCTATGCTGAAGCAACTGATCTTGACACTGGTTAAAGGATTGAGTTCAAATCCAGCTGCAATTATTAAGAAGATTGCTGGACTGGTTCCTGAAATTTTGTGTTCATATTTATTTTTCTATTGCTCACAAGTATTCCTCTTTCTTACTCCACCTTCTCAGGTTTCTGATTTTTATAAACGACCAATTTTAGATAGTCCAGCAAAAGCTGCTCTAGAAGAAAACTCCCACTTGTTCGAGGATAGAGGCATTCAATTACTTGGACAAATAAAATTTGGTTCTTGCCGTCCAAGAGCTATCTTATTTAAGGCTCTGGCGGACACTGTAGGGCTTGAAAGCCATCTCATGGTGGGCTTGCCAAATGAGGGGGCTATTGGGTGCGTGGACTCATACAAGCATATGTCTGTGACAGTTGTGTTGAATTCTGTGGAACTAGTTGTTGATCTGATGCGATTTCCTGGCCAGTTGTTACCTCGGTCAACTAAGGCAATTTTTATGACCCATATTTCTGCTGCTGGTGAAAGTGATTCTGCAGAAAACGATTCCTGCGATTCACCACTAGAACCTAATAGTCCTCTTTATGGTTTCTCAGAAAGAGTTGATCCTGACAGTGCTGAGAAAGATGAGAGCCTTCAATTCCATAGGAAACTTGAAGCAGCTTCAAATGCATATGGTCATTCATTGCGCAACATGATGTTGCGATCAAGTACAACACTTGACAGGAAACTGAGTTTATCACATAGTGAACCTAACATTGCAAATGCATTTTGGCGACGTAGTCGGAGAAAGGATATTGCTGAACAGCGGACTGCTAGTTCAAGTCCAGAGCATCCTTCATTTCGGGCGCGTGGCCGGTCTATGCTTAGTGGGGATAGGAAAGCCTTCAGAGATTTTTCTGATGATGTCTCTACTTCAAGATCAGATGGCGCTTCAACTTCAACTTCAGAAGCACGTCGATTAAGAAGAAGGAGCATCAGCATTACTCCAGAGATTGGTGATGATATCGTGAGGGCTGTACGAGCAATGAATGAAACACTGAAGCAAAATCGTCTTTTGAGAGGACAAGAAGATGACAGGTCGTTCTCCCACCCTTCAAATGAAAGAAATAGTAGTTCAGATGTTCAGAGAAATGATCAAGTGGGTTCTCAAAGAGCAATATCATTACCATCATCGCCACATGTGTATAGGGGTCAAACTTCTGATAGAATTGGGCATTCAGCGTATGCGAATGATGAATTAGCCTCAAAATGGACTAAAGTTCTTGAATCTTTCTCCTTGGATGACAAACCACTATTACCTTACCCAGAGTGGAACATCGATTACTCAGAACTGACAGTTGGAATCCGTATTGGAATTGGGTTTTTTGGAGAAGTTTTTCGTGGTATTTGGAATGGAACAGATGTGGCAATCAAAGTTTTCCTAGAGCAAGATCTAACTCCTGAAAACATTGAAGACTTCTGTAATGAGATATCAATTCTTAGTTATACTATTTCTGGGGGCATGCACAAAGCCGCCACGCTTATCAATGATCACCGAATACATGGAAATGGGTTCCTTGTATTCCTTGATCCATTTGAGTGGGGTTTGATGTGCATACACCGAATGAAAATAGCTCATCGGGACCTAAAAAGTGCAAATTGCCTAGTAAACAAGCACTGGACCGTCAAGATATGTGATTTTGGACTTTCAAGAATATTGACAGATGCTCCAGCAAGAGGGTCTCCATCTGCAGGAACTCCAGAATGGATGGCTCCTGAGCTCTTTCGAAACGAGCCCTTCACTGAAAAGTGTGATATTTTCAGCCTGGGGGTCATTATGTGGGAGCTATGCACACTAAATAGACCATGGGAGGGTGTTCCACCGGAGCGGGTAGTTTATGCTGTTGGCACGGAGGGATCCCGCCTCGAGATTCCTGAAGGCCCGCTTGGCAGACTTATATCAGATTGTTGGGCAGAACCAAATGAACGGCCAAGCTGCGAAGAGATTCTCTCACGCTTGCTAGACTGCGAGTACTCACTTTCTTGA | 2394 | 43.15 | MEDQRDDVAPSEQGPSNASWWSSDFEEKFGSVSLGPREDIVSEKEEIINSDQDVLLSPQRASQILWRTGMLCEPIPDGFYSIIPDKRLKEQFHSIPSLDELRALEAEGYRNDVILVETEKDKKLSMLKQLILTLVKGLSSNPAAIIKKIAGLVPEILCSYLFFYCSQVFLFLTPPSQVSDFYKRPILDSPAKAALEENSHLFEDRGIQLLGQIKFGSCRPRAILFKALADTVGLESHLMVGLPNEGAIGCVDSYKHMSVTVVLNSVELVVDLMRFPGQLLPRSTKAIFMTHISAAGESDSAENDSCDSPLEPNSPLYGFSERVDPDSAEKDESLQFHRKLEAASNAYGHSLRNMMLRSSTTLDRKLSLSHSEPNIANAFWRRSRRKDIAEQRTASSSPEHPSFRARGRSMLSGDRKAFRDFSDDVSTSRSDGASTSTSEARRLRRRSISITPEIGDDIVRAVRAMNETLKQNRLLRGQEDDRSFSHPSNERNSSSDVQRNDQVGSQRAISLPSSPHVYRGQTSDRIGHSAYANDELASKWTKVLESFSLDDKPLLPYPEWNIDYSELTVGIRIGIGFFGEVFRGIWNGTDVAIKVFLEQDLTPENIEDFCNEISILSYTISGGMHKAATLINDHRIHGNGFLVFLDPFEWGLMCIHRMKIAHRDLKSANCLVNKHWTVKICDFGLSRILTDAPARGSPSAGTPEWMAPELFRNEPFTEKCDIFSLGVIMWELCTLNRPWEGVPPERVVYAVGTEGSRLEIPEGPLGRLISDCWAEPNERPSCEEILSRLLDCEYSLS | 797 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 20410574 | 20421166 | - | Lsi10G015920.1 | Lsi10g01592 | 673149 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi10g01592 | 797 | PANTHER | MITOGEN ACTIVATED PROTEIN KINASE KINASE KINASE-LIKE PROTEIN-RELATED | 643 | 795 | - | - | |
Lsi10g01592 | 797 | MobiDBLite | consensus disorder prediction | 471 | 520 | - | - | |
Lsi10g01592 | 797 | Gene3D | Phosphorylase Kinase; domain 1 | 558 | 622 | - | - | |
Lsi10g01592 | 797 | ProSitePatterns | Protein kinases ATP-binding region signature. | 573 | 594 | IPR017441 | GO:0005524 | |
Lsi10g01592 | 797 | MobiDBLite | consensus disorder prediction | 387 | 444 | - | - | |
Lsi10g01592 | 797 | MobiDBLite | consensus disorder prediction | 409 | 426 | - | - | |
Lsi10g01592 | 797 | SUPERFAMILY | Protein kinase-like (PK-like) | 544 | 789 | IPR011009 | - | |
Lsi10g01592 | 797 | CDD | STKc_MAP3K-like | 573 | 789 | - | - | |
Lsi10g01592 | 797 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 660 | 672 | IPR008271 | GO:0004672|GO:0006468 | |
Lsi10g01592 | 797 | MobiDBLite | consensus disorder prediction | 298 | 330 | - | - | |
Lsi10g01592 | 797 | Pfam | Protein tyrosine and serine/threonine kinase | 651 | 789 | IPR001245 | GO:0004672|GO:0006468 | |
Lsi10g01592 | 797 | PANTHER | MITOGEN ACTIVATED PROTEIN KINASE KINASE KINASE-LIKE PROTEIN-RELATED | 29 | 617 | - | - | |
Lsi10g01592 | 797 | MobiDBLite | consensus disorder prediction | 488 | 520 | - | - | |
Lsi10g01592 | 797 | Pfam | Ethylene-responsive protein kinase Le-CTR1 | 178 | 279 | - | - | |
Lsi10g01592 | 797 | Pfam | Ethylene-responsive protein kinase Le-CTR1 | 59 | 156 | - | - | |
Lsi10g01592 | 797 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Lsi10g01592 | 797 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 643 | 795 | - | - | |
Lsi10g01592 | 797 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 29 | 617 | - | - | |
Lsi10g01592 | 797 | Gene3D | Transferase(Phosphotransferase) domain 1 | 650 | 796 | - | - | |
Lsi10g01592 | 797 | MobiDBLite | consensus disorder prediction | 473 | 487 | - | - | |
Lsi10g01592 | 797 | SMART | serkin_6 | 567 | 790 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi10g01592 | 797 | ProSiteProfiles | Protein kinase domain profile. | 567 | 796 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi10g01592 | Lsi-Chr10:20410574 | Lsi04g02284 | Lsi-Chr4:29872057 | 5.44E-35 | dispersed | |
Lsi10g01592 | Lsi-Chr10:20410574 | Lsi01g01250 | Lsi-Chr1:10677564 | 3.22E-36 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
83999 | PF07714 | PK_Tyr_Ser-Thr | 2.20E-30 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi10g01592 | - | - | csv:101220859 | 1386.7 |