Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01592 ATGGAGGATCAGCGAGATGATGTTGCACCATCAGAGCAAGGGCCTTCCAATGCTTCCTGGTGGTCTTCTGATTTCGAGGAGAAATTTGGATCTGTTTCTTTGGGCCCTCGGGAAGATATTGTAAGTGAAAAGGAAGAGATCATCAATTCTGACCAAGATGTGTTGTTGTCGCCTCAGAGAGCTTCTCAAATTCTTTGGCGAACTGGAATGCTTTGTGAACCAATTCCAGATGGGTTCTATTCTATTATTCCGGATAAAAGGCTAAAAGAGCAGTTCCACAGTATTCCTTCGCTGGATGAGCTTCGTGCTTTGGAGGCCGAAGGCTACAGAAACGATGTTATTCTTGTGGAGACAGAGAAAGATAAAAAACTTTCTATGCTGAAGCAACTGATCTTGACACTGGTTAAAGGATTGAGTTCAAATCCAGCTGCAATTATTAAGAAGATTGCTGGACTGGTTCCTGAAATTTTGTGTTCATATTTATTTTTCTATTGCTCACAAGTATTCCTCTTTCTTACTCCACCTTCTCAGGTTTCTGATTTTTATAAACGACCAATTTTAGATAGTCCAGCAAAAGCTGCTCTAGAAGAAAACTCCCACTTGTTCGAGGATAGAGGCATTCAATTACTTGGACAAATAAAATTTGGTTCTTGCCGTCCAAGAGCTATCTTATTTAAGGCTCTGGCGGACACTGTAGGGCTTGAAAGCCATCTCATGGTGGGCTTGCCAAATGAGGGGGCTATTGGGTGCGTGGACTCATACAAGCATATGTCTGTGACAGTTGTGTTGAATTCTGTGGAACTAGTTGTTGATCTGATGCGATTTCCTGGCCAGTTGTTACCTCGGTCAACTAAGGCAATTTTTATGACCCATATTTCTGCTGCTGGTGAAAGTGATTCTGCAGAAAACGATTCCTGCGATTCACCACTAGAACCTAATAGTCCTCTTTATGGTTTCTCAGAAAGAGTTGATCCTGACAGTGCTGAGAAAGATGAGAGCCTTCAATTCCATAGGAAACTTGAAGCAGCTTCAAATGCATATGGTCATTCATTGCGCAACATGATGTTGCGATCAAGTACAACACTTGACAGGAAACTGAGTTTATCACATAGTGAACCTAACATTGCAAATGCATTTTGGCGACGTAGTCGGAGAAAGGATATTGCTGAACAGCGGACTGCTAGTTCAAGTCCAGAGCATCCTTCATTTCGGGCGCGTGGCCGGTCTATGCTTAGTGGGGATAGGAAAGCCTTCAGAGATTTTTCTGATGATGTCTCTACTTCAAGATCAGATGGCGCTTCAACTTCAACTTCAGAAGCACGTCGATTAAGAAGAAGGAGCATCAGCATTACTCCAGAGATTGGTGATGATATCGTGAGGGCTGTACGAGCAATGAATGAAACACTGAAGCAAAATCGTCTTTTGAGAGGACAAGAAGATGACAGGTCGTTCTCCCACCCTTCAAATGAAAGAAATAGTAGTTCAGATGTTCAGAGAAATGATCAAGTGGGTTCTCAAAGAGCAATATCATTACCATCATCGCCACATGTGTATAGGGGTCAAACTTCTGATAGAATTGGGCATTCAGCGTATGCGAATGATGAATTAGCCTCAAAATGGACTAAAGTTCTTGAATCTTTCTCCTTGGATGACAAACCACTATTACCTTACCCAGAGTGGAACATCGATTACTCAGAACTGACAGTTGGAATCCGTATTGGAATTGGGTTTTTTGGAGAAGTTTTTCGTGGTATTTGGAATGGAACAGATGTGGCAATCAAAGTTTTCCTAGAGCAAGATCTAACTCCTGAAAACATTGAAGACTTCTGTAATGAGATATCAATTCTTAGTTATACTATTTCTGGGGGCATGCACAAAGCCGCCACGCTTATCAATGATCACCGAATACATGGAAATGGGTTCCTTGTATTCCTTGATCCATTTGAGTGGGGTTTGATGTGCATACACCGAATGAAAATAGCTCATCGGGACCTAAAAAGTGCAAATTGCCTAGTAAACAAGCACTGGACCGTCAAGATATGTGATTTTGGACTTTCAAGAATATTGACAGATGCTCCAGCAAGAGGGTCTCCATCTGCAGGAACTCCAGAATGGATGGCTCCTGAGCTCTTTCGAAACGAGCCCTTCACTGAAAAGTGTGATATTTTCAGCCTGGGGGTCATTATGTGGGAGCTATGCACACTAAATAGACCATGGGAGGGTGTTCCACCGGAGCGGGTAGTTTATGCTGTTGGCACGGAGGGATCCCGCCTCGAGATTCCTGAAGGCCCGCTTGGCAGACTTATATCAGATTGTTGGGCAGAACCAAATGAACGGCCAAGCTGCGAAGAGATTCTCTCACGCTTGCTAGACTGCGAGTACTCACTTTCTTGA 2394 43.15 MEDQRDDVAPSEQGPSNASWWSSDFEEKFGSVSLGPREDIVSEKEEIINSDQDVLLSPQRASQILWRTGMLCEPIPDGFYSIIPDKRLKEQFHSIPSLDELRALEAEGYRNDVILVETEKDKKLSMLKQLILTLVKGLSSNPAAIIKKIAGLVPEILCSYLFFYCSQVFLFLTPPSQVSDFYKRPILDSPAKAALEENSHLFEDRGIQLLGQIKFGSCRPRAILFKALADTVGLESHLMVGLPNEGAIGCVDSYKHMSVTVVLNSVELVVDLMRFPGQLLPRSTKAIFMTHISAAGESDSAENDSCDSPLEPNSPLYGFSERVDPDSAEKDESLQFHRKLEAASNAYGHSLRNMMLRSSTTLDRKLSLSHSEPNIANAFWRRSRRKDIAEQRTASSSPEHPSFRARGRSMLSGDRKAFRDFSDDVSTSRSDGASTSTSEARRLRRRSISITPEIGDDIVRAVRAMNETLKQNRLLRGQEDDRSFSHPSNERNSSSDVQRNDQVGSQRAISLPSSPHVYRGQTSDRIGHSAYANDELASKWTKVLESFSLDDKPLLPYPEWNIDYSELTVGIRIGIGFFGEVFRGIWNGTDVAIKVFLEQDLTPENIEDFCNEISILSYTISGGMHKAATLINDHRIHGNGFLVFLDPFEWGLMCIHRMKIAHRDLKSANCLVNKHWTVKICDFGLSRILTDAPARGSPSAGTPEWMAPELFRNEPFTEKCDIFSLGVIMWELCTLNRPWEGVPPERVVYAVGTEGSRLEIPEGPLGRLISDCWAEPNERPSCEEILSRLLDCEYSLS 797
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 20410574 20421166 - Lsi10G015920.1 Lsi10g01592 673149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01592 797 PANTHER MITOGEN ACTIVATED PROTEIN KINASE KINASE KINASE-LIKE PROTEIN-RELATED 643 795 - -
Lsi10g01592 797 MobiDBLite consensus disorder prediction 471 520 - -
Lsi10g01592 797 Gene3D Phosphorylase Kinase; domain 1 558 622 - -
Lsi10g01592 797 ProSitePatterns Protein kinases ATP-binding region signature. 573 594 IPR017441 GO:0005524
Lsi10g01592 797 MobiDBLite consensus disorder prediction 387 444 - -
Lsi10g01592 797 MobiDBLite consensus disorder prediction 409 426 - -
Lsi10g01592 797 SUPERFAMILY Protein kinase-like (PK-like) 544 789 IPR011009 -
Lsi10g01592 797 CDD STKc_MAP3K-like 573 789 - -
Lsi10g01592 797 ProSitePatterns Serine/Threonine protein kinases active-site signature. 660 672 IPR008271 GO:0004672|GO:0006468
Lsi10g01592 797 MobiDBLite consensus disorder prediction 298 330 - -
Lsi10g01592 797 Pfam Protein tyrosine and serine/threonine kinase 651 789 IPR001245 GO:0004672|GO:0006468
Lsi10g01592 797 PANTHER MITOGEN ACTIVATED PROTEIN KINASE KINASE KINASE-LIKE PROTEIN-RELATED 29 617 - -
Lsi10g01592 797 MobiDBLite consensus disorder prediction 488 520 - -
Lsi10g01592 797 Pfam Ethylene-responsive protein kinase Le-CTR1 178 279 - -
Lsi10g01592 797 Pfam Ethylene-responsive protein kinase Le-CTR1 59 156 - -
Lsi10g01592 797 MobiDBLite consensus disorder prediction 1 23 - -
Lsi10g01592 797 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 643 795 - -
Lsi10g01592 797 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 29 617 - -
Lsi10g01592 797 Gene3D Transferase(Phosphotransferase) domain 1 650 796 - -
Lsi10g01592 797 MobiDBLite consensus disorder prediction 473 487 - -
Lsi10g01592 797 SMART serkin_6 567 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g01592 797 ProSiteProfiles Protein kinase domain profile. 567 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g01592 Lsi-Chr10:20410574 Lsi04g02284 Lsi-Chr4:29872057 5.44E-35 dispersed
Lsi10g01592 Lsi-Chr10:20410574 Lsi01g01250 Lsi-Chr1:10677564 3.22E-36 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83999 PF07714 PK_Tyr_Ser-Thr 2.20E-30 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01592 - - csv:101220859 1386.7