Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01597 ATGATAAATGGGTTTGATTTGAACGAAGAAGCGAAAGGCATTGATGAAGGATTTGAAGAAGAGAACTCGAATAACTCGAACAACTCGAACTCGAATAGCAACAATGGAAGCATGGAGGAGGTGGAGAAAGAAGAAGAGGAAGAGGAACAAAGAAGAAATGGTAGTGTTAGAAAATATTCAAGGTCTAAAATGCCAAGGCTTCGTTGGACTCCTGATCTTCATCTTGCCTTTGTAAATGCTGTTGAAAGACTTGGTGGACAAGAAAGGGCAACCCCAAAGTTAGTACTTCAGTTGATGAATGTAAGAGGGCTCAGCATTGCTCATGTAAAGAGCCATTTGCAGATGTATCGAAGTAAGAAGCTGGATGAGTCTGGACAAGTTTTATCTCAGACAATGTTTGGAAGAAATCACATTGTGCAAATGTACCAGAGATTCAATCATCATCACCATGGACATTTCAGAGGGCATAATGGTAATTTCATGTCACACATCACAAAGCCTTACCACCACAGACCACCTTCTAACTCTTCCTCAAGGTTTGGAGATGAATGGGAAGAAGCAATAGATGATAATCCAATGGGAATTAGGGGATGTTCTAATTTATGGAACAAAAATCATAATTCAAACAGAATGGAGAAGTTATGCAATGATTCAGCTGATGATCCTTTTCAAACTTCTTCTCATATATATGAAGTTGCAAATGCAATTTCAAGATCAACCACACCCATAAGGCCAAGCCGATTCCTTGAGGATAAGAAATGGCCTCCTCATCATCACTTAATTACTACTACACAACATTTTCGTATCAATCATAATAATAATCCCCAAAAACATCACTTTCGACCTAATATAGTACAATCTAATTCTCTATGGAACCCTAAACTCACAAGCTTCAACCATGCCCATGATCATCTTCACCCACTTCCAACCACTTTACCTTCTCCATTTTTTAAGCTTACTCGCTGCGCCTTCGAGCCCGACCGCCTCCTCCAACGTCCCTCGACTCAATTAGAGTTGAGTTTACGGAATAATAGCTTGGTGGAAAATGGTGGTGAGATAATGGTGGTGAATAATAATAATAATAATAATAATGAGAAAGAAGAAGATGAATGCAGATCAAGAGAAATTAATACAGTACTTTCTCTCTCTCTCTCTAGCTCTTCATCAAGACAACAACAGGAAGATCAAGAAGAAGAATGTAGACAAACAAATATTAGTTCAAAGATTTGA 1230 38.46 MINGFDLNEEAKGIDEGFEEENSNNSNNSNSNSNNGSMEEVEKEEEEEEQRRNGSVRKYSRSKMPRLRWTPDLHLAFVNAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDESGQVLSQTMFGRNHIVQMYQRFNHHHHGHFRGHNGNFMSHITKPYHHRPPSNSSSRFGDEWEEAIDDNPMGIRGCSNLWNKNHNSNRMEKLCNDSADDPFQTSSHIYEVANAISRSTTPIRPSRFLEDKKWPPHHHLITTTQHFRINHNNNPQKHHFRPNIVQSNSLWNPKLTSFNHAHDHLHPLPTTLPSPFFKLTRCAFEPDRLLQRPSTQLELSLRNNSLVENGGEIMVVNNNNNNNNEKEEDECRSREINTVLSLSLSSSSSRQQQEDQEEECRQTNISSKI 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 20459500 20468207 - Lsi10G015970.1 Lsi10g01597 673154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01597 409 Gene3D - 64 121 - -
Lsi10g01597 409 SUPERFAMILY Homeodomain-like 63 119 IPR009057 -
Lsi10g01597 409 Pfam Myb-like DNA-binding domain 67 117 IPR001005 -
Lsi10g01597 409 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 65 120 IPR006447 GO:0003677
Lsi10g01597 409 MobiDBLite consensus disorder prediction 1 62 - -
Lsi10g01597 409 MobiDBLite consensus disorder prediction 382 409 - -
Lsi10g01597 409 MobiDBLite consensus disorder prediction 20 37 - -
Lsi10g01597 409 MobiDBLite consensus disorder prediction 392 409 - -
Lsi10g01597 409 Coils Coil 38 58 - -
Lsi10g01597 409 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 121 IPR017930 -
Lsi10g01597 409 PANTHER MYB-LIKE HTH TRANSCRIPTIONAL REGULATOR FAMILY PROTEIN 15 399 - -
Lsi10g01597 409 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 15 399 IPR044848 GO:0003700
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi10g01597 Lsi11g01422 CCT
Lsi10g01597 Lsi11g01422 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00237 Lsi-Chr1:2164720 Lsi10g01597 Lsi-Chr10:20459500 5.75E-38 dispersed
Lsi01g01566 Lsi-Chr1:13884416 Lsi10g01597 Lsi-Chr10:20459500 2.85E-34 dispersed
Lsi09g00912 Lsi-Chr9:11144609 Lsi10g01597 Lsi-Chr10:20459500 5.40E-20 dispersed
Lsi10g01597 Lsi-Chr10:20459500 Lsi11g00046 Lsi-Chr11:549077 5.16E-31 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26116 PF00249 Myb_DNA-binding 4.50E-07 CL0123 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01597 - - csv:101205384 502.286