Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00010 ATGAAGATGCAGCAGAGCCACCACTCAGTGGCTGTGAGGTTTAATGAGCAAATTGGGAGTAAAAAAGGGGTCACATTCATTCAAGCCAACAGGGCTTGGCTTCCTAAGTTCCTATTGCTTTGGGTTCTATTGGTGGCATTCATCAGTATGCTAATCTACAAGGGAATGGATGCTGACAACAAAGTTAGAAGAAAGGAAGTTTTGGGAAGCATGTGTGACCAGAGGGCAAGGATGCTTCAGGATCAATTCAGTGTCAGTGTCAACCATGTCCATGCTTTGGCCATTCTCATTTCCACTTTCCACTACTCCAAAAACATATCAGCAATTGATCAGGAAACTTTTGCTGAGTACACAGCCAGAACAGCTTTCGAGCGGCCTTTGCTTAGTGGCGTGGCATTTGCACAAAGAGTGGTGCACTTTGAGCGAGAGAAATTTGAGAAGCAACATGGGTGGACTATAAAAACAATGGAAAGGGAACCATCACCTATAAGGGATGAGTATGCGCCAGTCATATTTTCCCAGGAGACTGTTTCCTACATTGAATCTCTTGATATGATGTCTGGAGAGGAGGACCGCGAGAACATTTTGAGGTCAAGAGAAACAGGTAAAGCTGTTTTAACGAGCCCTTTCAGGCTACTGGGGTCTCATCATCTTGGAGTTGTGTTGACGATCCCTGTTTATAAAACCAAACTTCCTGCAAATCCAACTATGGATGAAAGAACTCGAGCAACGGCAGGTTACCTTGGTGGAGCATTTGATGTGGAATCGCTTGTGGAAAATTTACTTGGGCAACTTGCTGGAAATCAGGCCATTTTGGTGAATGTATATGATGTCACGAACTACTCCGATCCCCTAGTAATGTATGGTCATCAATATGAAGATGGTGACATGTCTCTTTCACATGAAAGCAAACTAGATTTTGGAGATCCATTTAGGAAGCATCAGATGATATGCAGATATCATCAGAAAGCACCAACATTATGGACGGCACTTACTACTGCATTCTTATTCTTTGTGATCGGATTGTTAGTGGGATATATCTTATACGGTGCAGCAACTCATATTGTTAAAGTTGAGGATGATTTCCATGAAATGCAAGAACTGAAAGTTCGAGCTGAAGCTGCTGATGTTGCAAAATCTCAGTTTCTTGCTACCGTCTCTCATGAAATCAGGACACCCATGAATGGCATCCTTGTCTTCGTTTCTGACAAAGTTCCTGAAATTGTTATGGGGGATCCCGGAAGGTTCAGACAAGTAATCACAAATCTTGTGGGTAACTCTGTGAAATTCACAGAACAAGGACATATATTCGTCAAAGTTCAATTAGCCGAACAATCAATGAGCTCTAAGAATATCAAATCCGAAACTCACGTGAACGGAAGCTTAGAGGATGGTGCATCACACAATAAACATCAGTTTGAAACCTTAAGTGGATGTGAGGCAGCTGATAACCAAAACAGTTGGGACACTTTTAAGCACCTAGCAAATGAGGAATTCCAACCGAATGGTTCAAGCAATCTCATGGCTACAAATGAAAGTTCTGATATTGTTACTGTCATGATATCTGTGGAAGATACTGGAATCGGGATTCCGTTGTGCGCTCAAGGTCGAGTTTTTATGCCGTTCATGCAAGCAGATAGCTCAACCTCCAGAAACTATGGTGGAACTGGTATTGGCTTAAGCATCAGTAAGTGTTTAGTTGAACTAATGGGTGGCCAGATAAACTTTGTAAGTCGGCCTCAGGTTGGAAGCACATTCTCGTTCACTGCTGTATTTGGGAGATGTGAGAAGAAAGCGACAGTCAACATCAAAAAGTCTAATTTGGAGGAACTTCCTTCTGCATTTAGAGGATTGAAAGCTGTTGTAGTTGACGGGAAACCAGTTAGAGCTGCTGTTACCAAATACCATTTGAAGAGACTTGGCATCCTGGTTGAAGTTGCCAGTAGTGTCAAGATGGCTGCAGCTTTATGGGGAAAAAATGGATCAGTTAGAGCAAGTAATATACTTCATCCTGACGTAATTCTTCTTGAGAAAGATATCTTTATTTCAAATGAGGAATGTGGTTCTTCTAATCTGCTTCATCAACTAGACTGGAAGCAGAATGGTCATACCTTAAAATTGCCAAAATTGATCCTTCTTGCAACCAGCGTGAGCACGGTGGAATTTGATAAAGCAAAGGAAGTGGGTTTCTCTGACACATTGATCATGAAACCATTGAGAGCAAGCATGATAGGCGCATGTCTTCAACAGGTGCTTGGCTCGGGAAAGAAACGACAGCTTGGAAAGGACATGGCTAATGGCTCTAACTTTCTTAAAGGGCTGCTCTGTGGTAAGAAAATATTGGTTGTTGATGACAATAGGGTAAACCGAAGAGTTGCTGCAGGTGCTTTGAAGAAATTTGGTGCTGATGTAGAGTGTGTTGAGAGCGGGAAAGCTGCGCTGGCATTGCTTCAACTGCCACACAATTTTGATGCTTGCTTTATGGATATTCAAATGCCAGAAATGGATGGATTTGAAGCAACCCGAAGAATCAGGCTGATGGAGAGCAAAGAAAATGAGGTACTGATTAGGGAATCTGGTGGCAAAGAAAATGCAAGGAAAGATGAGTGGCATGTTCCAATATTAGCCATGACCGCAGACGTAATTCACGCAACATACGACGAGTGCCTGAAATGTGGGATGGATGGATACGTATCAAAGCCATTCGAGGAAGAGAATCTTTACCAGGCAGTTGCCAAGTTTTTCAAATCAAAGCCCATCACTGATTCATGA 2772 42.46 MKMQQSHHSVAVRFNEQIGSKKGVTFIQANRAWLPKFLLLWVLLVAFISMLIYKGMDADNKVRRKEVLGSMCDQRARMLQDQFSVSVNHVHALAILISTFHYSKNISAIDQETFAEYTARTAFERPLLSGVAFAQRVVHFEREKFEKQHGWTIKTMEREPSPIRDEYAPVIFSQETVSYIESLDMMSGEEDRENILRSRETGKAVLTSPFRLLGSHHLGVVLTIPVYKTKLPANPTMDERTRATAGYLGGAFDVESLVENLLGQLAGNQAILVNVYDVTNYSDPLVMYGHQYEDGDMSLSHESKLDFGDPFRKHQMICRYHQKAPTLWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILVFVSDKVPEIVMGDPGRFRQVITNLVGNSVKFTEQGHIFVKVQLAEQSMSSKNIKSETHVNGSLEDGASHNKHQFETLSGCEAADNQNSWDTFKHLANEEFQPNGSSNLMATNESSDIVTVMISVEDTGIGIPLCAQGRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQINFVSRPQVGSTFSFTAVFGRCEKKATVNIKKSNLEELPSAFRGLKAVVVDGKPVRAAVTKYHLKRLGILVEVASSVKMAAALWGKNGSVRASNILHPDVILLEKDIFISNEECGSSNLLHQLDWKQNGHTLKLPKLILLATSVSTVEFDKAKEVGFSDTLIMKPLRASMIGACLQQVLGSGKKRQLGKDMANGSNFLKGLLCGKKILVVDDNRVNRRVAAGALKKFGADVECVESGKAALALLQLPHNFDACFMDIQMPEMDGFEATRRIRLMESKENEVLIRESGGKENARKDEWHVPILAMTADVIHATYDECLKCGMDGYVSKPFEEENLYQAVAKFFKSKPITDS 923
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 74604 82535 + Lsi11G000100.1 Lsi11g00010 673177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00010 923 Pfam Response regulator receiver domain 780 911 IPR001789 GO:0000160
Lsi11g00010 923 Gene3D - 56 108 - -
Lsi11g00010 923 SMART HKATPase_4 411 594 IPR003594 -
Lsi11g00010 923 PANTHER TWO-COMPONENT HISTIDINE KINASE 399 919 - -
Lsi11g00010 923 Gene3D - 613 756 - -
Lsi11g00010 923 Gene3D - 774 922 - -
Lsi11g00010 923 ProSiteProfiles Histidine kinase domain profile. 409 594 IPR005467 -
Lsi11g00010 923 SMART REC_2 778 911 IPR001789 GO:0000160
Lsi11g00010 923 CDD HATPase_EvgS-ArcB-TorS-like 416 592 - -
Lsi11g00010 923 PRINTS Bacterial sensor protein C-terminal signature 537 547 IPR004358 GO:0016310|GO:0016772
Lsi11g00010 923 PRINTS Bacterial sensor protein C-terminal signature 578 591 IPR004358 GO:0016310|GO:0016772
Lsi11g00010 923 PRINTS Bacterial sensor protein C-terminal signature 554 572 IPR004358 GO:0016310|GO:0016772
Lsi11g00010 923 PRINTS Bacterial sensor protein C-terminal signature 519 533 IPR004358 GO:0016310|GO:0016772
Lsi11g00010 923 PANTHER HISTIDINE KINASE 4 20 399 - -
Lsi11g00010 923 Pfam CHASE domain 108 288 IPR006189 -
Lsi11g00010 923 Gene3D CHASE domain 109 324 IPR042240 -
Lsi11g00010 923 PANTHER TWO-COMPONENT HISTIDINE KINASE 20 399 - -
Lsi11g00010 923 PANTHER HISTIDINE KINASE 4 399 919 - -
Lsi11g00010 923 ProSiteProfiles Response regulatory domain profile. 779 915 IPR001789 GO:0000160
Lsi11g00010 923 ProSiteProfiles Response regulatory domain profile. 619 752 IPR001789 GO:0000160
Lsi11g00010 923 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 392 589 IPR036890 -
Lsi11g00010 923 Gene3D - 369 597 IPR036890 -
Lsi11g00010 923 ProSiteProfiles CHASE domain profile. 105 317 IPR006189 -
Lsi11g00010 923 SUPERFAMILY CheY-like 615 753 IPR011006 -
Lsi11g00010 923 SMART CHASE_2 105 290 IPR006189 -
Lsi11g00010 923 CDD HisKA 378 402 IPR003661 GO:0000155|GO:0007165
Lsi11g00010 923 SUPERFAMILY CheY-like 777 915 IPR011006 -
Lsi11g00010 923 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 411 591 IPR003594 -
Lsi11g00010 923 CDD REC_hyHK_CKI1_RcsC-like 780 911 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g00010 Lsi-Chr11:74604 Lsi11g01360 Lsi-Chr11:22210127 2.40E-119 dispersed
Lsi11g00010 Lsi-Chr11:74604 Lsi10g00055 Lsi-Chr10:939481 2.96E-137 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26120 PF02518 HATPase_c 1.80E-31 CL0025 Lsi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00010 K14489 - csv:101204531 993.416