Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g00020 | ATGGATCTCTTCTTCTTCCTCTCTACAATGCCCATTTCAAAGCGTTTTCTATTTCTCGCCTTCTTTCCTCTGTTTCTCTCACCCCTTTCCTCCGCCGCCGCCGCCGACGACCGGAGCTTCCTCCTCCGCCACCACCGCCACCTCCTCCACCAACCCTTTTTCCCATGGACTTCTTTACCTCCATCTCAAGCTCCATCTTCTCTTTCTCCCTTGCCTCAACCACAGCACCAACAGCCTAAACTCCCCTTTTCCTCAACTTCATTTTCCTCGCCCCCTAAACCCTTTTTTCCATCCTACCCTTCGTCGCCGCCGCCGCCTCCGTCGCCCCCTTTGACGGCGCTTCCTACATTTCCGGCCAACATTTCTGCTCTTCTCTTTCCGCAGCCTACTTCTTCTTCCCAACACCTGCATCGCCATGTCTTCGCCATTGTCATCTCTGTTTCTCTTGTCTTCTCTGTTCTTGTTTTGCTCGTTGCTCTGTTTTTCTACTTTCGAAAGCGGAACAGACAAGTTTCTGTTACTGACAAGGTCTCGAGAACTGATAATCTCCGGCTGTACCCGCCGGATATTGACACTTCTGATGGAGTTCACAAGCACAGAACCTCCTCCACTACAAGCTCCAAATTTCTTTATCTTGGGACTTTGGCTACTTCTCGAGAGATTGATGAGGAGGCCGCCGGAAATGTGGAGGACGGTGGCGGCGGGATCGTGGAGTCTGTTTCTCCGGTGAAAATGGGGTCGCCGGAGCTGAAGCCCCTTCCGCCGCTTCCTCGCCGGAATTTTGCCGAAGATTATCGGAGGAATGTGGATGGTAATGATAACGATGATGACGATGACGACGATCGCGACGATGAAGAGTTCTTTTCGCCAAGAGGGTCTTCTGTCGGCGGGAAGGATAATGTGGGTAGTAATAGAAGATTGAGCCCTGCGAAGTTGTTTCAGAATGTGGAAACTGAAAATTTCTTGAGGAAAAGCTATAATTCCAGTTTGAATTCTGGTTCTCCCTCTGTTTCTCTTCCCAATAGTCCTTCTCCGCCATTGATGTTGAGCCCCACGAGCTTGAGATCGAAGTCTCCTGACTCCATCATCAGATTCCCTGTTCCTCTACGGCCATTGCCGACGCTTCCGGTACCACCATCACCGTCGTTGTCCTCTACTTCTTCGCCACTGGGAGGTTCAGGGAACACCAAGAACTCTCCATCGAGGGATTTTGACTTGTCGGAGCTGCACCGGCAGTCTTCGAATGGATTAAGGATGGATTACCAGCAACCATTGCCAGTGAAACTGCCACCACCCCAGCCACCGCCACCTCCACCTCCTCCTCCAATGTTTTGGGAGATTCCTCAATCTTCGTCTCTTCTCAACAAGGAACCAAATCTAGGTCCACCGGTACTCACGGTGCCATCCAGACCGATACTCTCACAGAACATAGCTCCTATGTCAGCAGGGATGTCAGCAGGGGAGCAATCAAACACCATTGGAGATGCAGAGAGAATGGAAGAAAATTCGAAGCCGAAACTGAAGGCATTACATTGGGACAAAGTACGGACAAGCTCCGATCGAGCCATGGTGTGGGATCAGATCAAGTCGAGTTCTTTTCAGTTGAATGAGGAAATGATTGAATCACTTTTTATGGTGAATAACAATAATTCAAATCTGATGAGCAAAGAAAATGGTAGTGTTCGTCAAAACATGCCTTTAGGGAGCCAAGAGAATCGAGTTCTTGATCCTAAGAAGTCTCACAATATTGCAATTTTGTTGAGGGCACTTAATGTTACCATTGAAGAAGTCTCAGAGGCCCTTTTGGAAGGAAATTCAGATACTTTGTGTACCGAACTGCTCGAAAGTTTACTAAAAATGGCGCCGACTGAAGAAGAAGAACGTAATTTGAAAGAATACAAAGACGATTCACCTTTTAAACTTGGCCCAGCTGAGAAATTCCTCAAGGTAGTTCTTGATGTACCATTTGCATTCAAAAGGGTGGATGCAATGCTTTACATTGCCAATTTCGATTCTGAGGTCGAGTACCTCAATCGGTCCTTTGAAACTCTTGAGGCTGCTTGTATAGAATTGAAGAACAGCAGAATGTTTCTCAAACTTCTTGAAGCAGTGCTCAAAACTGGGAATCGGATGAATGTAGGCACGAATCGAGGCGATGCTCATGCTTTTAAACTCGACACCCTTCTCAAGCTTGTTGATATCAAGGGTACTGATGGAAAGACCACTCTCTTGCATTTCGTAGTGCAGGAGATCATTAGAGCTGAAGGTTATCGACACTCCACCTCTGACCACAACCTGACAGCTGATAAAACTCAACAATCTTCCTTAACAATTGACGTCGAGTTTCGAAAGCTCGGTCTTCAAGTTGTTTCGGGTCTTAGTAGGGAGCTATCCAATGTGAAAAAAGCTGCATTAATGGATGCAGATGTGCTTAGCAACGAAGTAGGGAAACTCGCTGGAGGGATCACAAAAATCACTGAGGTCATTAGATTAGATGAAGACATGTCAAAAGGAGGGAGTAGGTCAAATTTCTCAGGCTCCATGAACAGGTTCTTGGGGAAGGCAGCTGAAGAAGTAGCAAGGGTACAAGTCCAAGAGGGCATTGTCCTCTCCATGGTGAAGGAAATAACCGAATACTTCCATGGAAACTTAGCAAAAGAAGAAGCTCGACCGCTGCGTATTTTCACGGTGGTAAAAGATTTTCTTGCAATCTTAGATCAGGTGTGCAAAGAAGTTGGAAGAATCAATGAAAGAACAATAGTCGGTTCGGCTCGTCAATTTACGGGCCCTTCGAATCCATGTCTTCCATCGATTTTCCCCGGATTATGCGAAAGTCAGCGCTATGGTTCGTCTGATGATGATAGCTCATCTTCCTCATCTTAG | 2883 | 47.03 | MDLFFFLSTMPISKRFLFLAFFPLFLSPLSSAAAADDRSFLLRHHRHLLHQPFFPWTSLPPSQAPSSLSPLPQPQHQQPKLPFSSTSFSSPPKPFFPSYPSSPPPPPSPPLTALPTFPANISALLFPQPTSSSQHLHRHVFAIVISVSLVFSVLVLLVALFFYFRKRNRQVSVTDKVSRTDNLRLYPPDIDTSDGVHKHRTSSTTSSKFLYLGTLATSREIDEEAAGNVEDGGGGIVESVSPVKMGSPELKPLPPLPRRNFAEDYRRNVDGNDNDDDDDDDRDDEEFFSPRGSSVGGKDNVGSNRRLSPAKLFQNVETENFLRKSYNSSLNSGSPSVSLPNSPSPPLMLSPTSLRSKSPDSIIRFPVPLRPLPTLPVPPSPSLSSTSSPLGGSGNTKNSPSRDFDLSELHRQSSNGLRMDYQQPLPVKLPPPQPPPPPPPPPMFWEIPQSSSLLNKEPNLGPPVLTVPSRPILSQNIAPMSAGMSAGEQSNTIGDAERMEENSKPKLKALHWDKVRTSSDRAMVWDQIKSSSFQLNEEMIESLFMVNNNNSNLMSKENGSVRQNMPLGSQENRVLDPKKSHNIAILLRALNVTIEEVSEALLEGNSDTLCTELLESLLKMAPTEEEERNLKEYKDDSPFKLGPAEKFLKVVLDVPFAFKRVDAMLYIANFDSEVEYLNRSFETLEAACIELKNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDIKGTDGKTTLLHFVVQEIIRAEGYRHSTSDHNLTADKTQQSSLTIDVEFRKLGLQVVSGLSRELSNVKKAALMDADVLSNEVGKLAGGITKITEVIRLDEDMSKGGSRSNFSGSMNRFLGKAAEEVARVQVQEGIVLSMVKEITEYFHGNLAKEEARPLRIFTVVKDFLAILDQVCKEVGRINERTIVGSARQFTGPSNPCLPSIFPGLCESQRYGSSDDDSSSSSS | 960 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 225806 | 230627 | + | Lsi11G000200.1 | Lsi11g00020 | 673187 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g00020 | 960 | MobiDBLite | consensus disorder prediction | 93 | 112 | - | - | |
Lsi11g00020 | 960 | MobiDBLite | consensus disorder prediction | 224 | 306 | - | - | |
Lsi11g00020 | 960 | ProSiteProfiles | Formin homology-2 (FH2) domain profile. | 497 | 931 | IPR015425 | - | |
Lsi11g00020 | 960 | MobiDBLite | consensus disorder prediction | 64 | 112 | - | - | |
Lsi11g00020 | 960 | MobiDBLite | consensus disorder prediction | 422 | 448 | - | - | |
Lsi11g00020 | 960 | MobiDBLite | consensus disorder prediction | 64 | 92 | - | - | |
Lsi11g00020 | 960 | MobiDBLite | consensus disorder prediction | 425 | 446 | - | - | |
Lsi11g00020 | 960 | MobiDBLite | consensus disorder prediction | 384 | 402 | - | - | |
Lsi11g00020 | 960 | PANTHER | FORMIN-RELATED | 39 | 957 | IPR027643 | GO:0003779|GO:0030036|GO:0045010|GO:0051015 | |
Lsi11g00020 | 960 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 431 | 918 | - | - | |
Lsi11g00020 | 960 | Pfam | Formin Homology 2 Domain | 500 | 905 | IPR015425 | - | |
Lsi11g00020 | 960 | SMART | it6_source | 497 | 920 | IPR015425 | - | |
Lsi11g00020 | 960 | MobiDBLite | consensus disorder prediction | 327 | 357 | - | - | |
Lsi11g00020 | 960 | MobiDBLite | consensus disorder prediction | 373 | 405 | - | - | |
Lsi11g00020 | 960 | PANTHER | FORMIN-LIKE PROTEIN 2 | 39 | 957 | - | - | |
Lsi11g00020 | 960 | Gene3D | Formin, FH2 domain | 496 | 915 | IPR042201 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi05g01149 | Lsi-Chr5:19328641 | Lsi11g00020 | Lsi-Chr11:225806 | 7.60E-12 | dispersed | |
Lsi06g00120 | Lsi-Chr6:1169294 | Lsi11g00020 | Lsi-Chr11:225806 | 3.90E-111 | dispersed | |
Lsi08g00735 | Lsi-Chr8:15695699 | Lsi11g00020 | Lsi-Chr11:225806 | 5.19E-83 | dispersed | |
Lsi10g00161 | Lsi-Chr10:2592284 | Lsi11g00020 | Lsi-Chr11:225806 | 2.37E-116 | dispersed | |
Lsi11g00020 | Lsi-Chr11:225806 | Lsi10g00514 | Lsi-Chr10:7336609 | 2.25E-173 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g00020 | - | - | csv:101213912 | 1326.23 |