Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00020 ATGGATCTCTTCTTCTTCCTCTCTACAATGCCCATTTCAAAGCGTTTTCTATTTCTCGCCTTCTTTCCTCTGTTTCTCTCACCCCTTTCCTCCGCCGCCGCCGCCGACGACCGGAGCTTCCTCCTCCGCCACCACCGCCACCTCCTCCACCAACCCTTTTTCCCATGGACTTCTTTACCTCCATCTCAAGCTCCATCTTCTCTTTCTCCCTTGCCTCAACCACAGCACCAACAGCCTAAACTCCCCTTTTCCTCAACTTCATTTTCCTCGCCCCCTAAACCCTTTTTTCCATCCTACCCTTCGTCGCCGCCGCCGCCTCCGTCGCCCCCTTTGACGGCGCTTCCTACATTTCCGGCCAACATTTCTGCTCTTCTCTTTCCGCAGCCTACTTCTTCTTCCCAACACCTGCATCGCCATGTCTTCGCCATTGTCATCTCTGTTTCTCTTGTCTTCTCTGTTCTTGTTTTGCTCGTTGCTCTGTTTTTCTACTTTCGAAAGCGGAACAGACAAGTTTCTGTTACTGACAAGGTCTCGAGAACTGATAATCTCCGGCTGTACCCGCCGGATATTGACACTTCTGATGGAGTTCACAAGCACAGAACCTCCTCCACTACAAGCTCCAAATTTCTTTATCTTGGGACTTTGGCTACTTCTCGAGAGATTGATGAGGAGGCCGCCGGAAATGTGGAGGACGGTGGCGGCGGGATCGTGGAGTCTGTTTCTCCGGTGAAAATGGGGTCGCCGGAGCTGAAGCCCCTTCCGCCGCTTCCTCGCCGGAATTTTGCCGAAGATTATCGGAGGAATGTGGATGGTAATGATAACGATGATGACGATGACGACGATCGCGACGATGAAGAGTTCTTTTCGCCAAGAGGGTCTTCTGTCGGCGGGAAGGATAATGTGGGTAGTAATAGAAGATTGAGCCCTGCGAAGTTGTTTCAGAATGTGGAAACTGAAAATTTCTTGAGGAAAAGCTATAATTCCAGTTTGAATTCTGGTTCTCCCTCTGTTTCTCTTCCCAATAGTCCTTCTCCGCCATTGATGTTGAGCCCCACGAGCTTGAGATCGAAGTCTCCTGACTCCATCATCAGATTCCCTGTTCCTCTACGGCCATTGCCGACGCTTCCGGTACCACCATCACCGTCGTTGTCCTCTACTTCTTCGCCACTGGGAGGTTCAGGGAACACCAAGAACTCTCCATCGAGGGATTTTGACTTGTCGGAGCTGCACCGGCAGTCTTCGAATGGATTAAGGATGGATTACCAGCAACCATTGCCAGTGAAACTGCCACCACCCCAGCCACCGCCACCTCCACCTCCTCCTCCAATGTTTTGGGAGATTCCTCAATCTTCGTCTCTTCTCAACAAGGAACCAAATCTAGGTCCACCGGTACTCACGGTGCCATCCAGACCGATACTCTCACAGAACATAGCTCCTATGTCAGCAGGGATGTCAGCAGGGGAGCAATCAAACACCATTGGAGATGCAGAGAGAATGGAAGAAAATTCGAAGCCGAAACTGAAGGCATTACATTGGGACAAAGTACGGACAAGCTCCGATCGAGCCATGGTGTGGGATCAGATCAAGTCGAGTTCTTTTCAGTTGAATGAGGAAATGATTGAATCACTTTTTATGGTGAATAACAATAATTCAAATCTGATGAGCAAAGAAAATGGTAGTGTTCGTCAAAACATGCCTTTAGGGAGCCAAGAGAATCGAGTTCTTGATCCTAAGAAGTCTCACAATATTGCAATTTTGTTGAGGGCACTTAATGTTACCATTGAAGAAGTCTCAGAGGCCCTTTTGGAAGGAAATTCAGATACTTTGTGTACCGAACTGCTCGAAAGTTTACTAAAAATGGCGCCGACTGAAGAAGAAGAACGTAATTTGAAAGAATACAAAGACGATTCACCTTTTAAACTTGGCCCAGCTGAGAAATTCCTCAAGGTAGTTCTTGATGTACCATTTGCATTCAAAAGGGTGGATGCAATGCTTTACATTGCCAATTTCGATTCTGAGGTCGAGTACCTCAATCGGTCCTTTGAAACTCTTGAGGCTGCTTGTATAGAATTGAAGAACAGCAGAATGTTTCTCAAACTTCTTGAAGCAGTGCTCAAAACTGGGAATCGGATGAATGTAGGCACGAATCGAGGCGATGCTCATGCTTTTAAACTCGACACCCTTCTCAAGCTTGTTGATATCAAGGGTACTGATGGAAAGACCACTCTCTTGCATTTCGTAGTGCAGGAGATCATTAGAGCTGAAGGTTATCGACACTCCACCTCTGACCACAACCTGACAGCTGATAAAACTCAACAATCTTCCTTAACAATTGACGTCGAGTTTCGAAAGCTCGGTCTTCAAGTTGTTTCGGGTCTTAGTAGGGAGCTATCCAATGTGAAAAAAGCTGCATTAATGGATGCAGATGTGCTTAGCAACGAAGTAGGGAAACTCGCTGGAGGGATCACAAAAATCACTGAGGTCATTAGATTAGATGAAGACATGTCAAAAGGAGGGAGTAGGTCAAATTTCTCAGGCTCCATGAACAGGTTCTTGGGGAAGGCAGCTGAAGAAGTAGCAAGGGTACAAGTCCAAGAGGGCATTGTCCTCTCCATGGTGAAGGAAATAACCGAATACTTCCATGGAAACTTAGCAAAAGAAGAAGCTCGACCGCTGCGTATTTTCACGGTGGTAAAAGATTTTCTTGCAATCTTAGATCAGGTGTGCAAAGAAGTTGGAAGAATCAATGAAAGAACAATAGTCGGTTCGGCTCGTCAATTTACGGGCCCTTCGAATCCATGTCTTCCATCGATTTTCCCCGGATTATGCGAAAGTCAGCGCTATGGTTCGTCTGATGATGATAGCTCATCTTCCTCATCTTAG 2883 47.03 MDLFFFLSTMPISKRFLFLAFFPLFLSPLSSAAAADDRSFLLRHHRHLLHQPFFPWTSLPPSQAPSSLSPLPQPQHQQPKLPFSSTSFSSPPKPFFPSYPSSPPPPPSPPLTALPTFPANISALLFPQPTSSSQHLHRHVFAIVISVSLVFSVLVLLVALFFYFRKRNRQVSVTDKVSRTDNLRLYPPDIDTSDGVHKHRTSSTTSSKFLYLGTLATSREIDEEAAGNVEDGGGGIVESVSPVKMGSPELKPLPPLPRRNFAEDYRRNVDGNDNDDDDDDDRDDEEFFSPRGSSVGGKDNVGSNRRLSPAKLFQNVETENFLRKSYNSSLNSGSPSVSLPNSPSPPLMLSPTSLRSKSPDSIIRFPVPLRPLPTLPVPPSPSLSSTSSPLGGSGNTKNSPSRDFDLSELHRQSSNGLRMDYQQPLPVKLPPPQPPPPPPPPPMFWEIPQSSSLLNKEPNLGPPVLTVPSRPILSQNIAPMSAGMSAGEQSNTIGDAERMEENSKPKLKALHWDKVRTSSDRAMVWDQIKSSSFQLNEEMIESLFMVNNNNSNLMSKENGSVRQNMPLGSQENRVLDPKKSHNIAILLRALNVTIEEVSEALLEGNSDTLCTELLESLLKMAPTEEEERNLKEYKDDSPFKLGPAEKFLKVVLDVPFAFKRVDAMLYIANFDSEVEYLNRSFETLEAACIELKNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDIKGTDGKTTLLHFVVQEIIRAEGYRHSTSDHNLTADKTQQSSLTIDVEFRKLGLQVVSGLSRELSNVKKAALMDADVLSNEVGKLAGGITKITEVIRLDEDMSKGGSRSNFSGSMNRFLGKAAEEVARVQVQEGIVLSMVKEITEYFHGNLAKEEARPLRIFTVVKDFLAILDQVCKEVGRINERTIVGSARQFTGPSNPCLPSIFPGLCESQRYGSSDDDSSSSSS 960
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 225806 230627 + Lsi11G000200.1 Lsi11g00020 673187

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00020 960 MobiDBLite consensus disorder prediction 93 112 - -
Lsi11g00020 960 MobiDBLite consensus disorder prediction 224 306 - -
Lsi11g00020 960 ProSiteProfiles Formin homology-2 (FH2) domain profile. 497 931 IPR015425 -
Lsi11g00020 960 MobiDBLite consensus disorder prediction 64 112 - -
Lsi11g00020 960 MobiDBLite consensus disorder prediction 422 448 - -
Lsi11g00020 960 MobiDBLite consensus disorder prediction 64 92 - -
Lsi11g00020 960 MobiDBLite consensus disorder prediction 425 446 - -
Lsi11g00020 960 MobiDBLite consensus disorder prediction 384 402 - -
Lsi11g00020 960 PANTHER FORMIN-RELATED 39 957 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Lsi11g00020 960 SUPERFAMILY Formin homology 2 domain (FH2 domain) 431 918 - -
Lsi11g00020 960 Pfam Formin Homology 2 Domain 500 905 IPR015425 -
Lsi11g00020 960 SMART it6_source 497 920 IPR015425 -
Lsi11g00020 960 MobiDBLite consensus disorder prediction 327 357 - -
Lsi11g00020 960 MobiDBLite consensus disorder prediction 373 405 - -
Lsi11g00020 960 PANTHER FORMIN-LIKE PROTEIN 2 39 957 - -
Lsi11g00020 960 Gene3D Formin, FH2 domain 496 915 IPR042201 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00020 - - - csv:101213912 1326.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01149 Lsi-Chr5:19328641 Lsi11g00020 Lsi-Chr11:225806 7.60E-12 dispersed
Lsi06g00120 Lsi-Chr6:1169294 Lsi11g00020 Lsi-Chr11:225806 3.90E-111 dispersed
Lsi08g00735 Lsi-Chr8:15695699 Lsi11g00020 Lsi-Chr11:225806 5.19E-83 dispersed
Lsi10g00161 Lsi-Chr10:2592284 Lsi11g00020 Lsi-Chr11:225806 2.37E-116 dispersed
Lsi11g00020 Lsi-Chr11:225806 Lsi10g00514 Lsi-Chr10:7336609 2.25E-173 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi11g00020 . 462 942 FH2 protein (formin) Gene Family AT3G25500 66.5 3.9e-165 579.3
Lsi10g00514 . 431 887 FH2 protein (formin) Gene Family AT3G25500 60.3 2.7e-142 503.4
Lsi06g00120 . 490 887 FH2 protein (formin) Gene Family AT3G25500 51.5 1.9e-103 374.4
Lsi05g01149 . 644 1067 FH2 protein (formin) Gene Family AT2G43800 63.4 1.2e-141 501.1
Lsi10g00514 . 465 903 FH2 protein (formin) Gene Family AT2G43800 55.1 2.3e-126 450.3
Lsi10g00161 . 285 593 FH2 protein (formin) Gene Family AT4G15200 54.4 7.6e-52 201.8
Lsi04g01249 . 447 593 FH2 protein (formin) Gene Family AT4G15200 66.7 4.3e-47 186.0
Lsi04g01249 . 7 885 FH2 protein (formin) Gene Family AT5G54650 51.5 1.3e-172 604.0
Lsi10g00161 . 447 915 FH2 protein (formin) Gene Family AT5G54650 61.1 3.5e-154 542.7
Lsi05g01149 . 655 1056 FH2 protein (formin) Gene Family AT5G54650 50.8 2.8e-103 373.6
Lsi10g00514 . 31 906 FH2 protein (formin) Gene Family AT5G67470 57.6 6.2e-236 814.3
Lsi05g01149 . 636 1088 FH2 protein (formin) Gene Family AT5G67470 59.5 1.2e-135 481.1
Lsi11g00020 . 503 938 FH2 protein (formin) Gene Family AT5G67470 60.8 1.3e-129 461.1
Lsi06g00120 . 490 889 FH2 protein (formin) Gene Family AT5G67470 50.6 7.4e-104 375.6
Lsi04g00506 . 354 834 FH2 protein (formin) Gene Family AT1G59910 52.2 1.6e-125 447.6
Lsi05g01149 . 676 1057 FH2 protein (formin) Gene Family AT5G48360 52.9 3.0e-101 366.7
Lsi10g00514 . 489 864 FH2 protein (formin) Gene Family AT5G48360 50.5 9.0e-90 328.6
Lsi10g00514 . 469 863 FH2 protein (formin) Gene Family AT3G05470 52.3 2.4e-107 387.1
Lsi04g01249 . 453 868 FH2 protein (formin) Gene Family AT3G05470 50.2 1.2e-106 384.8
Lsi06g01445 CCT 21 368 FH2 protein (formin) Gene Family AT1G31810 63.2 3.7e-114 410.2
Lsi06g01444 . 1 322 FH2 protein (formin) Gene Family AT1G31810 53.5 2.8e-106 384.0
Lsi06g01445 CCT 20 374 FH2 protein (formin) Gene Family AT5G07650 68.2 5.1e-125 445.7
Lsi02g00091 CCT 995 1284 FH2 protein (formin) Gene Family AT5G07650 69.7 6.7e-109 392.1
Lsi04g02074 . 1059 1378 FH2 protein (formin) Gene Family AT5G07650 60.3 5.3e-98 355.9
Lsi06g01160 . 906 1209 FH2 protein (formin) Gene Family AT5G07650 57.8 7.2e-95 345.5
Lsi06g01445 CCT 21 367 FH2 protein (formin) Gene Family AT5G07770 65.1 1.2e-115 414.1
Lsi02g00091 CCT 909 1284 FH2 protein (formin) Gene Family AT5G07770 61.3 1.6e-115 413.7
Lsi04g02074 . 983 1370 FH2 protein (formin) Gene Family AT5G07770 54.2 1.1e-105 380.9
Lsi06g01160 . 829 1201 FH2 protein (formin) Gene Family AT5G07770 53.7 1.2e-102 370.9
Lsi04g02074 . 975 1378 FH2 protein (formin) Gene Family AT3G32400 69.9 3.6e-153 538.5
Lsi06g01160 . 836 1210 FH2 protein (formin) Gene Family AT3G32400 65.8 2.0e-135 479.6
Lsi02g00091 CCT 879 1284 FH2 protein (formin) Gene Family AT3G32400 56.3 1.9e-117 419.9
Lsi06g01445 CCT 21 374 FH2 protein (formin) Gene Family AT3G32400 63.0 4.2e-117 418.7
Lsi06g01160 . 3 1210 FH2 protein (formin) Gene Family AT2G25050 50.6 8.8e-267 917.1
Lsi06g01445 CCT 21 374 FH2 protein (formin) Gene Family AT2G25050 66.4 1.0e-121 435.3
Lsi06g01444 . 1 316 FH2 protein (formin) Gene Family AT2G25050 61.7 1.1e-112 405.2
Lsi06g01445 CCT 21 374 FH2 protein (formin) Gene Family AT5G07780 62.0 7.7e-105 377.9
Lsi02g00091 CCT 910 1284 FH2 protein (formin) Gene Family AT5G07780 55.8 1.0e-101 367.5
Lsi06g01160 . 836 1209 FH2 protein (formin) Gene Family AT5G07780 50.2 4.5e-89 325.5
Lsi06g01444 . 1 590 FH2 protein (formin) Gene Family AT5G07740 57.6 2.5e-166 583.9
Lsi06g01445 CCT 21 383 FH2 protein (formin) Gene Family AT5G07740 75.5 2.9e-143 507.3
Lsi06g01445 CCT 14 381 FH2 protein (formin) Gene Family AT5G07760 67.0 6.8e-123 438.7
Lsi02g00091 CCT 994 1284 FH2 protein (formin) Gene Family AT5G07760 69.4 1.8e-107 387.5
Lsi04g02074 . 1058 1387 FH2 protein (formin) Gene Family AT5G07760 58.4 3.8e-97 353.2
Lsi06g01160 . 905 1209 FH2 protein (formin) Gene Family AT5G07760 60.2 2.5e-96 350.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012766 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g00020 Lsi_Chr11 FPKM 2.887729 2.507555 4.36128 3.854625 6.170287 6.006132 5.873853 10.913725 9.301603 9.083116