Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00020 ATGGATCTCTTCTTCTTCCTCTCTACAATGCCCATTTCAAAGCGTTTTCTATTTCTCGCCTTCTTTCCTCTGTTTCTCTCACCCCTTTCCTCCGCCGCCGCCGCCGACGACCGGAGCTTCCTCCTCCGCCACCACCGCCACCTCCTCCACCAACCCTTTTTCCCATGGACTTCTTTACCTCCATCTCAAGCTCCATCTTCTCTTTCTCCCTTGCCTCAACCACAGCACCAACAGCCTAAACTCCCCTTTTCCTCAACTTCATTTTCCTCGCCCCCTAAACCCTTTTTTCCATCCTACCCTTCGTCGCCGCCGCCGCCTCCGTCGCCCCCTTTGACGGCGCTTCCTACATTTCCGGCCAACATTTCTGCTCTTCTCTTTCCGCAGCCTACTTCTTCTTCCCAACACCTGCATCGCCATGTCTTCGCCATTGTCATCTCTGTTTCTCTTGTCTTCTCTGTTCTTGTTTTGCTCGTTGCTCTGTTTTTCTACTTTCGAAAGCGGAACAGACAAGTTTCTGTTACTGACAAGGTCTCGAGAACTGATAATCTCCGGCTGTACCCGCCGGATATTGACACTTCTGATGGAGTTCACAAGCACAGAACCTCCTCCACTACAAGCTCCAAATTTCTTTATCTTGGGACTTTGGCTACTTCTCGAGAGATTGATGAGGAGGCCGCCGGAAATGTGGAGGACGGTGGCGGCGGGATCGTGGAGTCTGTTTCTCCGGTGAAAATGGGGTCGCCGGAGCTGAAGCCCCTTCCGCCGCTTCCTCGCCGGAATTTTGCCGAAGATTATCGGAGGAATGTGGATGGTAATGATAACGATGATGACGATGACGACGATCGCGACGATGAAGAGTTCTTTTCGCCAAGAGGGTCTTCTGTCGGCGGGAAGGATAATGTGGGTAGTAATAGAAGATTGAGCCCTGCGAAGTTGTTTCAGAATGTGGAAACTGAAAATTTCTTGAGGAAAAGCTATAATTCCAGTTTGAATTCTGGTTCTCCCTCTGTTTCTCTTCCCAATAGTCCTTCTCCGCCATTGATGTTGAGCCCCACGAGCTTGAGATCGAAGTCTCCTGACTCCATCATCAGATTCCCTGTTCCTCTACGGCCATTGCCGACGCTTCCGGTACCACCATCACCGTCGTTGTCCTCTACTTCTTCGCCACTGGGAGGTTCAGGGAACACCAAGAACTCTCCATCGAGGGATTTTGACTTGTCGGAGCTGCACCGGCAGTCTTCGAATGGATTAAGGATGGATTACCAGCAACCATTGCCAGTGAAACTGCCACCACCCCAGCCACCGCCACCTCCACCTCCTCCTCCAATGTTTTGGGAGATTCCTCAATCTTCGTCTCTTCTCAACAAGGAACCAAATCTAGGTCCACCGGTACTCACGGTGCCATCCAGACCGATACTCTCACAGAACATAGCTCCTATGTCAGCAGGGATGTCAGCAGGGGAGCAATCAAACACCATTGGAGATGCAGAGAGAATGGAAGAAAATTCGAAGCCGAAACTGAAGGCATTACATTGGGACAAAGTACGGACAAGCTCCGATCGAGCCATGGTGTGGGATCAGATCAAGTCGAGTTCTTTTCAGTTGAATGAGGAAATGATTGAATCACTTTTTATGGTGAATAACAATAATTCAAATCTGATGAGCAAAGAAAATGGTAGTGTTCGTCAAAACATGCCTTTAGGGAGCCAAGAGAATCGAGTTCTTGATCCTAAGAAGTCTCACAATATTGCAATTTTGTTGAGGGCACTTAATGTTACCATTGAAGAAGTCTCAGAGGCCCTTTTGGAAGGAAATTCAGATACTTTGTGTACCGAACTGCTCGAAAGTTTACTAAAAATGGCGCCGACTGAAGAAGAAGAACGTAATTTGAAAGAATACAAAGACGATTCACCTTTTAAACTTGGCCCAGCTGAGAAATTCCTCAAGGTAGTTCTTGATGTACCATTTGCATTCAAAAGGGTGGATGCAATGCTTTACATTGCCAATTTCGATTCTGAGGTCGAGTACCTCAATCGGTCCTTTGAAACTCTTGAGGCTGCTTGTATAGAATTGAAGAACAGCAGAATGTTTCTCAAACTTCTTGAAGCAGTGCTCAAAACTGGGAATCGGATGAATGTAGGCACGAATCGAGGCGATGCTCATGCTTTTAAACTCGACACCCTTCTCAAGCTTGTTGATATCAAGGGTACTGATGGAAAGACCACTCTCTTGCATTTCGTAGTGCAGGAGATCATTAGAGCTGAAGGTTATCGACACTCCACCTCTGACCACAACCTGACAGCTGATAAAACTCAACAATCTTCCTTAACAATTGACGTCGAGTTTCGAAAGCTCGGTCTTCAAGTTGTTTCGGGTCTTAGTAGGGAGCTATCCAATGTGAAAAAAGCTGCATTAATGGATGCAGATGTGCTTAGCAACGAAGTAGGGAAACTCGCTGGAGGGATCACAAAAATCACTGAGGTCATTAGATTAGATGAAGACATGTCAAAAGGAGGGAGTAGGTCAAATTTCTCAGGCTCCATGAACAGGTTCTTGGGGAAGGCAGCTGAAGAAGTAGCAAGGGTACAAGTCCAAGAGGGCATTGTCCTCTCCATGGTGAAGGAAATAACCGAATACTTCCATGGAAACTTAGCAAAAGAAGAAGCTCGACCGCTGCGTATTTTCACGGTGGTAAAAGATTTTCTTGCAATCTTAGATCAGGTGTGCAAAGAAGTTGGAAGAATCAATGAAAGAACAATAGTCGGTTCGGCTCGTCAATTTACGGGCCCTTCGAATCCATGTCTTCCATCGATTTTCCCCGGATTATGCGAAAGTCAGCGCTATGGTTCGTCTGATGATGATAGCTCATCTTCCTCATCTTAG 2883 47.03 MDLFFFLSTMPISKRFLFLAFFPLFLSPLSSAAAADDRSFLLRHHRHLLHQPFFPWTSLPPSQAPSSLSPLPQPQHQQPKLPFSSTSFSSPPKPFFPSYPSSPPPPPSPPLTALPTFPANISALLFPQPTSSSQHLHRHVFAIVISVSLVFSVLVLLVALFFYFRKRNRQVSVTDKVSRTDNLRLYPPDIDTSDGVHKHRTSSTTSSKFLYLGTLATSREIDEEAAGNVEDGGGGIVESVSPVKMGSPELKPLPPLPRRNFAEDYRRNVDGNDNDDDDDDDRDDEEFFSPRGSSVGGKDNVGSNRRLSPAKLFQNVETENFLRKSYNSSLNSGSPSVSLPNSPSPPLMLSPTSLRSKSPDSIIRFPVPLRPLPTLPVPPSPSLSSTSSPLGGSGNTKNSPSRDFDLSELHRQSSNGLRMDYQQPLPVKLPPPQPPPPPPPPPMFWEIPQSSSLLNKEPNLGPPVLTVPSRPILSQNIAPMSAGMSAGEQSNTIGDAERMEENSKPKLKALHWDKVRTSSDRAMVWDQIKSSSFQLNEEMIESLFMVNNNNSNLMSKENGSVRQNMPLGSQENRVLDPKKSHNIAILLRALNVTIEEVSEALLEGNSDTLCTELLESLLKMAPTEEEERNLKEYKDDSPFKLGPAEKFLKVVLDVPFAFKRVDAMLYIANFDSEVEYLNRSFETLEAACIELKNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDIKGTDGKTTLLHFVVQEIIRAEGYRHSTSDHNLTADKTQQSSLTIDVEFRKLGLQVVSGLSRELSNVKKAALMDADVLSNEVGKLAGGITKITEVIRLDEDMSKGGSRSNFSGSMNRFLGKAAEEVARVQVQEGIVLSMVKEITEYFHGNLAKEEARPLRIFTVVKDFLAILDQVCKEVGRINERTIVGSARQFTGPSNPCLPSIFPGLCESQRYGSSDDDSSSSSS 960
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 225806 230627 + Lsi11G000200.1 Lsi11g00020 673187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00020 960 MobiDBLite consensus disorder prediction 93 112 - -
Lsi11g00020 960 MobiDBLite consensus disorder prediction 224 306 - -
Lsi11g00020 960 ProSiteProfiles Formin homology-2 (FH2) domain profile. 497 931 IPR015425 -
Lsi11g00020 960 MobiDBLite consensus disorder prediction 64 112 - -
Lsi11g00020 960 MobiDBLite consensus disorder prediction 422 448 - -
Lsi11g00020 960 MobiDBLite consensus disorder prediction 64 92 - -
Lsi11g00020 960 MobiDBLite consensus disorder prediction 425 446 - -
Lsi11g00020 960 MobiDBLite consensus disorder prediction 384 402 - -
Lsi11g00020 960 PANTHER FORMIN-RELATED 39 957 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Lsi11g00020 960 SUPERFAMILY Formin homology 2 domain (FH2 domain) 431 918 - -
Lsi11g00020 960 Pfam Formin Homology 2 Domain 500 905 IPR015425 -
Lsi11g00020 960 SMART it6_source 497 920 IPR015425 -
Lsi11g00020 960 MobiDBLite consensus disorder prediction 327 357 - -
Lsi11g00020 960 MobiDBLite consensus disorder prediction 373 405 - -
Lsi11g00020 960 PANTHER FORMIN-LIKE PROTEIN 2 39 957 - -
Lsi11g00020 960 Gene3D Formin, FH2 domain 496 915 IPR042201 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01149 Lsi-Chr5:19328641 Lsi11g00020 Lsi-Chr11:225806 7.60E-12 dispersed
Lsi06g00120 Lsi-Chr6:1169294 Lsi11g00020 Lsi-Chr11:225806 3.90E-111 dispersed
Lsi08g00735 Lsi-Chr8:15695699 Lsi11g00020 Lsi-Chr11:225806 5.19E-83 dispersed
Lsi10g00161 Lsi-Chr10:2592284 Lsi11g00020 Lsi-Chr11:225806 2.37E-116 dispersed
Lsi11g00020 Lsi-Chr11:225806 Lsi10g00514 Lsi-Chr10:7336609 2.25E-173 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00020 - - csv:101213912 1326.23