Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00022 ATGAAATGTGACCACTTAGAAATGGCAATGACTCGAGTGATCGTTGTTGTTACGTTGTCGTTGTTGCTTTTTGGTATAGTTTGTGATGCCCAACTTTCCTCTACATTTTATGATCAAACTTGTCCTACTGTACTCAATACTATCAGAACTGTTGTTAGACAAGCAGTTTCTCAAGAGCGTCGAATGGCTGCATCTCTCATTCGTCTCCATTTTCATGATTGCTTTGTTCAAGGTTGTGATGCGTCGATATTGCTTGATGACACTCCTTCCATGATTGGTGAACAAAATGCAGCTCCAAACAGAAATTCTGCAAGAGGTTATGGAGTGATACACAAGGCTAAGACGGAAGTTGAGAAGATATGTCCTGGCGTTGTATCTTGTGCAGATATTCTTTCAGTAGCTGCAAGAGATGCATCTTTTGCTGTTGGAGGTCCATCTTGGACGGTGAAACTTGGAAGACGAGATTCTACCAGTGCAAGCAAAACTCTAGCAGAAAGTGAGCTACCAGGCTTTCAAGAAAGCCTCAATAGACTTATATCCATTTTTGCAAATAAAGGTCTTAGTGCTAGAGACATGATTGCACTGTCAGGTTCTCACACCATAGGACAAGCTCAATGCTTTCTTTTTCGTAATAGGATATACAACCAAAGTAATATTGACTCAGGATTTGCTAGTACTCGTCGTAGAAATTGTCCTACAACGGGTGAAAATGGAAATTTGGCACCAATTGATTTGGTGACACCTAACTCCTTTGACAATAACTACTTCAAAAATCTTGTGCAAAAGAAGGGATTGCTTGAAACAGATCAAGTTCTCTTCAATGGAGGATCGACTGATAATATTGTCACAGAGTATAGTAGGAATCCAACTACATTCAAATCAGATTTCGCAACTGCAATGATAAAAATGGGAGACATTCAACCTCTCATTGGGGTAGAAGGGCAAATAAGAAACATATGCGCAAGATTCACATTTGAAACTCATAGAGGCTCAAGGTCTATGGACAACATCAATGGCACAAAGCTAGACCAGAGTAAGAAAGAGAGTCCAAGAGAGTGGCCAGCCAAGCAAGGGCGTTGGCTCGGCCAAAGATAA 1095 40.73 MKCDHLEMAMTRVIVVVTLSLLLFGIVCDAQLSSTFYDQTCPTVLNTIRTVVRQAVSQERRMAASLIRLHFHDCFVQGCDASILLDDTPSMIGEQNAAPNRNSARGYGVIHKAKTEVEKICPGVVSCADILSVAARDASFAVGGPSWTVKLGRRDSTSASKTLAESELPGFQESLNRLISIFANKGLSARDMIALSGSHTIGQAQCFLFRNRIYNQSNIDSGFASTRRRNCPTTGENGNLAPIDLVTPNSFDNNYFKNLVQKKGLLETDQVLFNGGSTDNIVTEYSRNPTTFKSDFATAMIKMGDIQPLIGVEGQIRNICARFTFETHRGSRSMDNINGTKLDQSKKESPREWPAKQGRWLGQR 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 240308 243874 + Lsi11G000220.1 Lsi11g00022 673189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00022 364 PANTHER PEROXIDASE 11 322 - -
Lsi11g00022 364 SUPERFAMILY Heme-dependent peroxidases 31 322 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi11g00022 364 ProSitePatterns Peroxidases proximal heme-ligand signature. 191 201 IPR019793 -
Lsi11g00022 364 PRINTS Haem peroxidase superfamily signature 63 77 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi11g00022 364 PRINTS Haem peroxidase superfamily signature 125 142 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi11g00022 364 PRINTS Haem peroxidase superfamily signature 244 259 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi11g00022 364 PRINTS Haem peroxidase superfamily signature 143 155 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi11g00022 364 PRINTS Haem peroxidase superfamily signature 191 206 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi11g00022 364 Pfam Peroxidase 49 288 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi11g00022 364 Gene3D Peroxidase, domain 2 169 303 - -
Lsi11g00022 364 ProSiteProfiles Plant heme peroxidase family profile. 31 324 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi11g00022 364 MobiDBLite consensus disorder prediction 332 364 - -
Lsi11g00022 364 CDD secretory_peroxidase 31 323 IPR033905 GO:0004601|GO:0042744
Lsi11g00022 364 Gene3D - 35 320 - -
Lsi11g00022 364 PANTHER PEROXIDASE 72-RELATED 11 322 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g00022 364 PRINTS Plant peroxidase signature 65 85 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g00022 364 PRINTS Plant peroxidase signature 124 134 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g00022 364 PRINTS Plant peroxidase signature 143 158 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g00022 364 PRINTS Plant peroxidase signature 242 257 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g00022 364 PRINTS Plant peroxidase signature 105 118 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g00022 364 PRINTS Plant peroxidase signature 41 60 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g00022 364 PRINTS Plant peroxidase signature 298 311 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g00022 364 PRINTS Plant peroxidase signature 190 202 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g00022 364 PRINTS Plant peroxidase signature 258 275 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g00022 364 ProSitePatterns Peroxidases active site signature. 63 74 IPR019794 GO:0004601
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g01474 Lsi-Chr10:18870058 Lsi11g00022 Lsi-Chr11:240308 1.20E-116 dispersed
Lsi10g01475 Lsi-Chr10:18880440 Lsi11g00022 Lsi-Chr11:240308 1.97E-130 dispersed
Lsi11g00022 Lsi-Chr11:240308 Lsi11g00024 Lsi-Chr11:252005 0 dispersed
Lsi11g00022 Lsi-Chr11:240308 Lsi11g00023 Lsi-Chr11:245729 1.54E-169 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00022 K00430 - csv:116403796 542.732