Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00023 ATGGCAATGGCTCGAGTAGTTGTTGTAGCATTCACGTTGTTGCTTTTGGGTTTAGCATGCAATGCCCAACTTTCCTCCTCGTTTTACGACCAGACTTGTCCCACTGCACTCACCACTATTAGAACTGTTATCAGGCAAGCCGTCTCTCAAGAACGTCCACCCAACATAAACTCTGCTAGAGGTTATGGGGTGATACACAAGGCCAAGACTGAAGTTGAAAAGAAATGTCCTGGTATTGTATCTTGTGCAGATATTCTTGCTGTAGCTACAAGAGATGCTTCTTTTGCTGTTGGTGGTCCATCTTGGACGGTAAGGCTTGGAAGAAGAGACTCTACAACTGCAAGCAAAACTCTAGCGGAGAATGAGCTTCCACATTTTCAAGCAGGTCTTGATAAACTTATTTCCATCTTTGCAAATAAGGGACTTAGTACGAGAGATATGGTTGCACTGTCAGGTTCTCATACTATAGGACAAGCACAATGCTTTCTTTTCTGCAATAGGATATACAACCAAAGTAATATTGATGCAGGATTTGCTAGCACACGCCGTAGAAATTGTCCAACATCAGGTGGGAATGGAAATTTGGCACCACTTGATTTGGTCACACCCAATTCCTTTGACAATAATTACTTCAAAAATCTTGTTCAAAGAAAAGGTTTTCTAGAAACAGATCAAGTCCTCTTTAATGGAGGATCAACAGATAATATTGTTATAGAGTACAGTAGAGATCCAACAACATTCAAATCTGACTTTGCAGCTGCAATGATTAAAATGGGAGACATCGAACCTCTTACTGGTTTAGAAGGACAGATAAGAAATATATGTGGTGCTGTTAACTAA 840 40.48 MAMARVVVVAFTLLLLGLACNAQLSSSFYDQTCPTALTTIRTVIRQAVSQERPPNINSARGYGVIHKAKTEVEKKCPGIVSCADILAVATRDASFAVGGPSWTVRLGRRDSTTASKTLAENELPHFQAGLDKLISIFANKGLSTRDMVALSGSHTIGQAQCFLFCNRIYNQSNIDAGFASTRRRNCPTSGGNGNLAPLDLVTPNSFDNNYFKNLVQRKGFLETDQVLFNGGSTDNIVIEYSRDPTTFKSDFAAAMIKMGDIEPLTGLEGQIRNICGAVN 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 245729 246872 - Lsi11G000230.1 Lsi11g00023 673190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00023 279 SUPERFAMILY Heme-dependent peroxidases 23 279 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi11g00023 279 PRINTS Plant peroxidase signature 197 212 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g00023 279 PRINTS Plant peroxidase signature 33 52 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g00023 279 PRINTS Plant peroxidase signature 213 230 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g00023 279 PRINTS Plant peroxidase signature 253 266 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g00023 279 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Lsi11g00023 279 PANTHER PEROXIDASE 54 278 - -
Lsi11g00023 279 PANTHER PEROXIDASE 5 52 - -
Lsi11g00023 279 Pfam Peroxidase 43 243 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi11g00023 279 PRINTS Haem peroxidase superfamily signature 80 97 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi11g00023 279 PRINTS Haem peroxidase superfamily signature 98 110 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi11g00023 279 PRINTS Haem peroxidase superfamily signature 146 161 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi11g00023 279 PRINTS Haem peroxidase superfamily signature 199 214 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi11g00023 279 CDD secretory_peroxidase 23 278 IPR033905 GO:0004601|GO:0042744
Lsi11g00023 279 ProSitePatterns Peroxidases proximal heme-ligand signature. 146 156 IPR019793 -
Lsi11g00023 279 Gene3D - 50 275 - -
Lsi11g00023 279 PANTHER PEROXIDASE 72-RELATED 54 278 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g00023 279 Gene3D Peroxidase, domain 2 124 258 - -
Lsi11g00023 279 ProSiteProfiles Plant heme peroxidase family profile. 33 279 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi11g00023 279 PANTHER PEROXIDASE 72-RELATED 5 52 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00322 Lsi-Chr4:3288635 Lsi11g00023 Lsi-Chr11:245729 1.51E-16 dispersed
Lsi11g00023 Lsi-Chr11:245729 Lsi10g01475 Lsi-Chr10:18880440 1.18E-99 dispersed
Lsi11g00022 Lsi-Chr11:240308 Lsi11g00023 Lsi-Chr11:245729 1.54E-169 tandem
Lsi11g00023 Lsi-Chr11:245729 Lsi11g00024 Lsi-Chr11:252005 1.43E-180 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00023 K00430 - csv:116403994 472.626