Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00024 ATGGGATATTTTACTATATTTCCAAATATAGCATCAATATTTGGTTTTTGTAAATACGACAAAATATTTAACTTGTTGTTGCTTTTGGGTTTAGCTTGCAATGCCCAACTTTCCTCTTCGTTTTACGACCAGACTTGTCCTACTGCACTCACCACTATTAGAACTGTTATCAGGCAAGCGGTCTCGCAAGAACGTCGTATGGCTGCATCTCTCATTCGCCTCCATTTCCACGATTGTTTTGTTCAGGGATGTGATGCGTCAATATTACTTGATGATACTCCCTCTATGATTGGCGAACAAAACGCGGCACCCAACATAAACTCCGCTAGAGGGTACGGGGTGATACACAAGGCGAAGACTGAAGTTGAAAAGAAATGTCCTGGTATCGTATCTTGTGCAGATATTCTTGTTGTAGCTGCAAGAGATGCTTCTTTTGCTGTTGGTGGTCCATCTTGGACAGTAAGGCTTGGCAGAAGAGACTCTACAACTGCAAGCAAAACTCTAGCGGAGAACGAGCTTCCACATTTCCAAGCAAGTCTTGATAGACTTATTTCCATCTTTGCAAATAAGGGACTTAGTACGAGAGATATGGTTGCACTGTCAGGTTCTCATACTATAGGACAATCTCAATGCTTTCTTTTCCGCAATAGGATATACAACCAAAGTAATATTGATGCAGGATTTGCTAGCACACGCCGTAGAAATTGTCCAACATCTAGTGGAAATGGAAATTTGGCACCACTTGATTTGGTCACACCCAATTCCTTTGACAATAATTACTTCAAAAATCTTGTTCAAAGAAAGGGTTTGCTAGAAACAGATCAAGTCCTCTTTAATGGAGGATCAACGGATAATATTGTTATAGAGTACAGTAGAGATCCAACAGCATTCAAATCTGACTTTGCAGCTGCAATGATTAAAATGGGAGACATCGAACCTCTCATTGGTTTAGAAGGACAGATAAGAAATATATGTGGTGCTGTTAACTAA 990 40.1 MGYFTIFPNIASIFGFCKYDKIFNLLLLLGLACNAQLSSSFYDQTCPTALTTIRTVIRQAVSQERRMAASLIRLHFHDCFVQGCDASILLDDTPSMIGEQNAAPNINSARGYGVIHKAKTEVEKKCPGIVSCADILVVAARDASFAVGGPSWTVRLGRRDSTTASKTLAENELPHFQASLDRLISIFANKGLSTRDMVALSGSHTIGQSQCFLFRNRIYNQSNIDAGFASTRRRNCPTSSGNGNLAPLDLVTPNSFDNNYFKNLVQRKGLLETDQVLFNGGSTDNIVIEYSRDPTAFKSDFAAAMIKMGDIEPLIGLEGQIRNICGAVN 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 252005 256889 - Lsi11G000240.1 Lsi11g00024 673191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00024 329 ProSitePatterns Peroxidases proximal heme-ligand signature. 196 206 IPR019793 -
Lsi11g00024 329 PRINTS Haem peroxidase superfamily signature 148 160 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi11g00024 329 PRINTS Haem peroxidase superfamily signature 68 82 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi11g00024 329 PRINTS Haem peroxidase superfamily signature 249 264 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi11g00024 329 PRINTS Haem peroxidase superfamily signature 130 147 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi11g00024 329 PRINTS Haem peroxidase superfamily signature 196 211 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi11g00024 329 ProSitePatterns Peroxidases active site signature. 68 79 IPR019794 GO:0004601
Lsi11g00024 329 ProSiteProfiles Plant heme peroxidase family profile. 36 329 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi11g00024 329 Gene3D Peroxidase, domain 2 174 308 - -
Lsi11g00024 329 CDD secretory_peroxidase 36 328 IPR033905 GO:0004601|GO:0042744
Lsi11g00024 329 PRINTS Plant peroxidase signature 263 280 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g00024 329 PRINTS Plant peroxidase signature 195 207 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g00024 329 PRINTS Plant peroxidase signature 110 123 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g00024 329 PRINTS Plant peroxidase signature 70 90 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g00024 329 PRINTS Plant peroxidase signature 148 163 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g00024 329 PRINTS Plant peroxidase signature 129 139 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g00024 329 PRINTS Plant peroxidase signature 303 316 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g00024 329 PRINTS Plant peroxidase signature 46 65 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g00024 329 PRINTS Plant peroxidase signature 247 262 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g00024 329 PANTHER PEROXIDASE 72-RELATED 21 328 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g00024 329 SUPERFAMILY Heme-dependent peroxidases 36 329 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi11g00024 329 Pfam Peroxidase 54 293 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi11g00024 329 Gene3D - 41 325 - -
Lsi11g00024 329 PANTHER PEROXIDASE 21 328 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g00022 Lsi-Chr11:240308 Lsi11g00024 Lsi-Chr11:252005 0 dispersed
Lsi11g00024 Lsi-Chr11:252005 Lsi11g01574 Lsi-Chr11:24075599 2.42E-118 dispersed
Lsi11g00023 Lsi-Chr11:245729 Lsi11g00024 Lsi-Chr11:252005 1.43E-180 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00024 K00430 - csv:116403994 563.148