Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00025 ATGGTTCTTCAAAACTTCTTCTCAATCCTTCTTCCCATCTCCCTCTTCCTCCAATTCCATCTCTCCCGTTCTCAAAACCTCATAATTTGCCACTCCAACGACTCCAATGCCTTACAGGACTTCCACAGCAGTTTAAGTTCTCAAATCGATGGATTGCACACTAACTGTTCGACGAATTGCTGCACTTGTATTGGTGTCACTTGTGACTCTTCTGGGAGGGTTGTGAAGATTGAACTTGGTGGGAGAAAGCTAGTTGGTCAACTACCAATCTCAATTGCAAGATTGGAACGCCTCAGAGTTCTCAATTTGTCCTCTAATTCCCTCACTGGGTCTATTCCTTTGGCTCTGTTTCAGCTCCCATACTTGGAAGTTCTTGATCTTAGCTTCAATCGGTTCTTGGGGAGCATCTCAACAGGTAACATCGATTTGCCATCCCTTCGGATTCTTAATGTTTCTCATAATTCCTTCAACGGTGTTCTTCCATTTGGGGTTTGTGTCAACTCCTCTAGAATTGAGATTCTGAGTCTGGGTTTCAATGATTTTGTTGGTATGTTTCCTTTTCAACTTGCTGAATGTGTTTCCTTGAAGAGACTGCATCTGGAATCGAATTTTATCAGTGGTGGGATACCTGATGAGGTTTCTGGATTGAGAAAATTGACCCATTTGTGTGTTCAGAACAACAAGCTTTCTGGTTCTTTGAGTAGTGTTGTTGGGAATCTAACAACCCTTGTTCGGTTGGATTTGTCATCTAATGAGTTTTTCGGGGAAATTCCTGATGTTTTTTACAGCTCTGTGAATTTGAGTTACTTTGTTGCTGAGTCTAATAGGTTTAGTGGGAGGATTCCCAATTCCTTGTCAAACTCTGCTTCACTTACCGTCCTAAATTTGAGGAACAATTCAATAGGGGGAATTCTTGATCTTAATTGTACAGCAATGAGGAGCCTGGTTACACTTGATTTAGGCTCTAATAGGTTTCATGGATCTATACCTAGTAATCTTCCCTCTTGTACCAAACTGAGAAGCATAAACCTTGCTAGGAACAAGCTCGGCGGTCAGATCCCTGAAAGCTTTAGAAACTTTCATAGCCTATCGTATTTATCACTTACGAACACGAGCATTGTTAATGTTTCATCTGCTCTTAATATCTTGCAACATTGTCAAAATTTGAGTACTGTGGTTTTGACCTTTAACTTCCATGGTGAAGTGTTGGGAGATGATCCTAACTTGAATTTCAACAGCCTCCAAGTTTTTATAATTGCTAATTGTGGATTGAAGGGAATGATACCCCAGTGGTTGAGAGGTTCTAACAAGTTGCAGATGTTGGATTTGTCATGGAACCGTCTTGGAGGAAATATTCCATCCTGGTTTGGCGAGTTTCAGTTCTTGTTTTACTTGGATTTATCTAATAATTCATTCATCGGAGGTATCCCAAAAGAGATGACTGAAATGAAGAGTTACATTGACAGAAACTTCTTGTTTGATGAAACTGCCTCACCGGACTTTTCTCTTTTCGTGAAAAAAAATGGAACTGGATTGCAGTATAATCAATTATGGAGACTTCCACCCACTTTGAACCTCAGTCTCAACAATCTCAGTGGACCAATCTGGCCAGAGTTTGGAAATCTTAAGGAGATTCTAGTTCTTGATTTGAAAATCAACAGTTTGTCAGGATCAATTCCAAGCAGCCTCTCTGGGATGGTTAGTTTAGAGACTCTAGATCTTTCTCACAACAAACTTTCAGGAATAATTCCACCTTCACTGCAAAAGCTCAATTTTTTGTCCAAGTTCAGTGTTGCATACAATCAATTACATGGGGCGATTCTTAAAGGAGGTCAGTTTCATACCTTTGGTAACTCTAGCTTTGAAGGAAACAATTTTTGTGTCCAAGGCGACCTCTGTGCATCAATTAACCGAAATCCTCTTGTAGTATCCCGCAAATCAAGAACGGTCATGGGGTCTCTTATAGGTATAATTCTCGGTATTATCTTTGGCATCATTTTTCTTGCAACACTTGTAGTTGTGTTTATGCTTCGGGCACCTCGGGGAAGAGTAGGAGATCCTGAAAATGAAGTGCCTAACGTTGACAATAATGACTTGGAGGAAGTCAAGGCAGGATTGGTAGTTTTGTTCCAAAACAACAACAATGAAAGTCTCTCGCTGGACGATATTTTGAAATCGACGAATGACTTCGATCAAGAAAATATCATTGGATGTGGGGGTTTTGGTTTAGTTTACAGAGCCACCCTTCCTGATGGTAGAAAGGTCGCTATAAAACGTTTGTCTGGTGATTGTGGTCAAATGGACAGAGAATTTCGAGCAGAAATCGAAACGCTTTCACGTGCTCAGCATCCAAATCTTGTTCTTCTTCAGGGGTATTGTATGTATAAGAATGACAGGCTTTTGATTTATTCGTACATGGAGAATGGTAGCTTAGATTACTGGTTACATGAAAAACCTGATGGCCCATCTTGCCTCGACTGGGATACCAGACTGCAGATTGCTCGAGGGGCTGTTGGGGGGCTGGCTTATTTGCATCAATCCTGTGAACCCCATATCCTCCATCGAGATATAAAGTCGAGTAACATTCTTTTAGACGAAAATTTTAAAGCTCATTTAGCTGATTTTGGTCTTGCTAGACTCATTCTTCCCTATGATACCCATGTAACAACCGATCTTGTTGGTACCTTGGGCTACATTCCACCCGAGTACGGACAATCCTCAGTCGCGACCTACAAAGGGGATGTATACAGTTTTGGAGTTGTTTTATTAGAGCTTTTGACTGGTAAAAGGCCAATCGATATGTGCAGACCGAAAGGACTTCGAGACTTGATCTCTTGGGTGTTCCAATTGAGGAAAGACAGAAAAGTAAGCGAAGTGTTTGACCCATTAGTATACGATAAGAAGAACGAGACAGCGATGGCTGAAGTTCTTGATATAGCATGTCTTTGCTTGTGTAAGGAACCTAAAGAGAGGCCTTCTACTCAACAGCTAGTTTCTTGGCTTGACAAAGTAAGTTAA 3018 40.92 MVLQNFFSILLPISLFLQFHLSRSQNLIICHSNDSNALQDFHSSLSSQIDGLHTNCSTNCCTCIGVTCDSSGRVVKIELGGRKLVGQLPISIARLERLRVLNLSSNSLTGSIPLALFQLPYLEVLDLSFNRFLGSISTGNIDLPSLRILNVSHNSFNGVLPFGVCVNSSRIEILSLGFNDFVGMFPFQLAECVSLKRLHLESNFISGGIPDEVSGLRKLTHLCVQNNKLSGSLSSVVGNLTTLVRLDLSSNEFFGEIPDVFYSSVNLSYFVAESNRFSGRIPNSLSNSASLTVLNLRNNSIGGILDLNCTAMRSLVTLDLGSNRFHGSIPSNLPSCTKLRSINLARNKLGGQIPESFRNFHSLSYLSLTNTSIVNVSSALNILQHCQNLSTVVLTFNFHGEVLGDDPNLNFNSLQVFIIANCGLKGMIPQWLRGSNKLQMLDLSWNRLGGNIPSWFGEFQFLFYLDLSNNSFIGGIPKEMTEMKSYIDRNFLFDETASPDFSLFVKKNGTGLQYNQLWRLPPTLNLSLNNLSGPIWPEFGNLKEILVLDLKINSLSGSIPSSLSGMVSLETLDLSHNKLSGIIPPSLQKLNFLSKFSVAYNQLHGAILKGGQFHTFGNSSFEGNNFCVQGDLCASINRNPLVVSRKSRTVMGSLIGIILGIIFGIIFLATLVVVFMLRAPRGRVGDPENEVPNVDNNDLEEVKAGLVVLFQNNNNESLSLDDILKSTNDFDQENIIGCGGFGLVYRATLPDGRKVAIKRLSGDCGQMDREFRAEIETLSRAQHPNLVLLQGYCMYKNDRLLIYSYMENGSLDYWLHEKPDGPSCLDWDTRLQIARGAVGGLAYLHQSCEPHILHRDIKSSNILLDENFKAHLADFGLARLILPYDTHVTTDLVGTLGYIPPEYGQSSVATYKGDVYSFGVVLLELLTGKRPIDMCRPKGLRDLISWVFQLRKDRKVSEVFDPLVYDKKNETAMAEVLDIACLCLCKEPKERPSTQQLVSWLDKVS 1005
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 257189 260206 + Lsi11G000250.1 Lsi11g00025 673192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00025 1005 Gene3D Ribonuclease Inhibitor 31 308 IPR032675 -
Lsi11g00025 1005 Pfam Protein kinase domain 731 999 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00025 1005 ProSitePatterns Protein kinases ATP-binding region signature. 736 758 IPR017441 GO:0005524
Lsi11g00025 1005 ProSiteProfiles Leucine-rich repeat profile. 290 311 IPR001611 GO:0005515
Lsi11g00025 1005 ProSitePatterns Serine/Threonine protein kinases active-site signature. 852 864 IPR008271 GO:0004672|GO:0006468
Lsi11g00025 1005 ProSiteProfiles Leucine-rich repeat profile. 568 589 IPR001611 GO:0005515
Lsi11g00025 1005 SMART serkin_6 730 1001 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00025 1005 Gene3D Phosphorylase Kinase; domain 1 693 805 - -
Lsi11g00025 1005 SUPERFAMILY RNI-like 169 478 - -
Lsi11g00025 1005 PANTHER RECEPTOR-LIKE PROTEIN 55 78 214 - -
Lsi11g00025 1005 PANTHER RECEPTOR-LIKE PROTEIN 55 171 1004 - -
Lsi11g00025 1005 Pfam Leucine Rich Repeat 437 457 IPR001611 GO:0005515
Lsi11g00025 1005 PANTHER TYROSINE-SULFATED GLYCOPEPTIDE RECEPTOR 1 141 243 - -
Lsi11g00025 1005 PANTHER TYROSINE-SULFATED GLYCOPEPTIDE RECEPTOR 1 171 1004 - -
Lsi11g00025 1005 ProSiteProfiles Protein kinase domain profile. 730 1001 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00025 1005 SUPERFAMILY L domain-like 512 627 - -
Lsi11g00025 1005 PANTHER TYROSINE-SULFATED GLYCOPEPTIDE RECEPTOR 1 78 214 - -
Lsi11g00025 1005 Pfam Leucine rich repeat 523 579 IPR001611 GO:0005515
Lsi11g00025 1005 Pfam Leucine rich repeat 313 373 IPR001611 GO:0005515
Lsi11g00025 1005 Pfam Leucine rich repeat 97 155 IPR001611 GO:0005515
Lsi11g00025 1005 SUPERFAMILY Protein kinase-like (PK-like) 714 1001 IPR011009 -
Lsi11g00025 1005 SMART LRR_typ_2 312 336 IPR003591 -
Lsi11g00025 1005 SMART LRR_typ_2 566 589 IPR003591 -
Lsi11g00025 1005 SMART LRR_typ_2 95 119 IPR003591 -
Lsi11g00025 1005 SMART LRR_typ_2 143 167 IPR003591 -
Lsi11g00025 1005 SMART LRR_typ_2 240 263 IPR003591 -
Lsi11g00025 1005 SMART LRR_typ_2 216 239 IPR003591 -
Lsi11g00025 1005 PANTHER RECEPTOR-LIKE PROTEIN 55 141 243 - -
Lsi11g00025 1005 Gene3D Transferase(Phosphotransferase) domain 1 806 1004 - -
Lsi11g00025 1005 PRINTS Leucine-rich repeat signature 98 111 - -
Lsi11g00025 1005 PRINTS Leucine-rich repeat signature 566 579 - -
Lsi11g00025 1005 Gene3D Ribonuclease Inhibitor 309 635 IPR032675 -
Lsi11g00025 1005 SUPERFAMILY L domain-like 58 161 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00137 Lsi-Chr5:2036081 Lsi11g00025 Lsi-Chr11:257189 0 dispersed
Lsi09g00748 Lsi-Chr9:8577757 Lsi11g00025 Lsi-Chr11:257189 2.14E-166 dispersed
Lsi11g00025 Lsi-Chr11:257189 Lsi05g01245 Lsi-Chr5:20257695 1.60E-42 dispersed
Lsi11g00025 Lsi-Chr11:257189 Lsi05g01810 Lsi-Chr5:25345800 2.34E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84001 PF00069 Pkinase 6.30E-46 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00025 - - bhj:120069286 1757.65