Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g00025 | ATGGTTCTTCAAAACTTCTTCTCAATCCTTCTTCCCATCTCCCTCTTCCTCCAATTCCATCTCTCCCGTTCTCAAAACCTCATAATTTGCCACTCCAACGACTCCAATGCCTTACAGGACTTCCACAGCAGTTTAAGTTCTCAAATCGATGGATTGCACACTAACTGTTCGACGAATTGCTGCACTTGTATTGGTGTCACTTGTGACTCTTCTGGGAGGGTTGTGAAGATTGAACTTGGTGGGAGAAAGCTAGTTGGTCAACTACCAATCTCAATTGCAAGATTGGAACGCCTCAGAGTTCTCAATTTGTCCTCTAATTCCCTCACTGGGTCTATTCCTTTGGCTCTGTTTCAGCTCCCATACTTGGAAGTTCTTGATCTTAGCTTCAATCGGTTCTTGGGGAGCATCTCAACAGGTAACATCGATTTGCCATCCCTTCGGATTCTTAATGTTTCTCATAATTCCTTCAACGGTGTTCTTCCATTTGGGGTTTGTGTCAACTCCTCTAGAATTGAGATTCTGAGTCTGGGTTTCAATGATTTTGTTGGTATGTTTCCTTTTCAACTTGCTGAATGTGTTTCCTTGAAGAGACTGCATCTGGAATCGAATTTTATCAGTGGTGGGATACCTGATGAGGTTTCTGGATTGAGAAAATTGACCCATTTGTGTGTTCAGAACAACAAGCTTTCTGGTTCTTTGAGTAGTGTTGTTGGGAATCTAACAACCCTTGTTCGGTTGGATTTGTCATCTAATGAGTTTTTCGGGGAAATTCCTGATGTTTTTTACAGCTCTGTGAATTTGAGTTACTTTGTTGCTGAGTCTAATAGGTTTAGTGGGAGGATTCCCAATTCCTTGTCAAACTCTGCTTCACTTACCGTCCTAAATTTGAGGAACAATTCAATAGGGGGAATTCTTGATCTTAATTGTACAGCAATGAGGAGCCTGGTTACACTTGATTTAGGCTCTAATAGGTTTCATGGATCTATACCTAGTAATCTTCCCTCTTGTACCAAACTGAGAAGCATAAACCTTGCTAGGAACAAGCTCGGCGGTCAGATCCCTGAAAGCTTTAGAAACTTTCATAGCCTATCGTATTTATCACTTACGAACACGAGCATTGTTAATGTTTCATCTGCTCTTAATATCTTGCAACATTGTCAAAATTTGAGTACTGTGGTTTTGACCTTTAACTTCCATGGTGAAGTGTTGGGAGATGATCCTAACTTGAATTTCAACAGCCTCCAAGTTTTTATAATTGCTAATTGTGGATTGAAGGGAATGATACCCCAGTGGTTGAGAGGTTCTAACAAGTTGCAGATGTTGGATTTGTCATGGAACCGTCTTGGAGGAAATATTCCATCCTGGTTTGGCGAGTTTCAGTTCTTGTTTTACTTGGATTTATCTAATAATTCATTCATCGGAGGTATCCCAAAAGAGATGACTGAAATGAAGAGTTACATTGACAGAAACTTCTTGTTTGATGAAACTGCCTCACCGGACTTTTCTCTTTTCGTGAAAAAAAATGGAACTGGATTGCAGTATAATCAATTATGGAGACTTCCACCCACTTTGAACCTCAGTCTCAACAATCTCAGTGGACCAATCTGGCCAGAGTTTGGAAATCTTAAGGAGATTCTAGTTCTTGATTTGAAAATCAACAGTTTGTCAGGATCAATTCCAAGCAGCCTCTCTGGGATGGTTAGTTTAGAGACTCTAGATCTTTCTCACAACAAACTTTCAGGAATAATTCCACCTTCACTGCAAAAGCTCAATTTTTTGTCCAAGTTCAGTGTTGCATACAATCAATTACATGGGGCGATTCTTAAAGGAGGTCAGTTTCATACCTTTGGTAACTCTAGCTTTGAAGGAAACAATTTTTGTGTCCAAGGCGACCTCTGTGCATCAATTAACCGAAATCCTCTTGTAGTATCCCGCAAATCAAGAACGGTCATGGGGTCTCTTATAGGTATAATTCTCGGTATTATCTTTGGCATCATTTTTCTTGCAACACTTGTAGTTGTGTTTATGCTTCGGGCACCTCGGGGAAGAGTAGGAGATCCTGAAAATGAAGTGCCTAACGTTGACAATAATGACTTGGAGGAAGTCAAGGCAGGATTGGTAGTTTTGTTCCAAAACAACAACAATGAAAGTCTCTCGCTGGACGATATTTTGAAATCGACGAATGACTTCGATCAAGAAAATATCATTGGATGTGGGGGTTTTGGTTTAGTTTACAGAGCCACCCTTCCTGATGGTAGAAAGGTCGCTATAAAACGTTTGTCTGGTGATTGTGGTCAAATGGACAGAGAATTTCGAGCAGAAATCGAAACGCTTTCACGTGCTCAGCATCCAAATCTTGTTCTTCTTCAGGGGTATTGTATGTATAAGAATGACAGGCTTTTGATTTATTCGTACATGGAGAATGGTAGCTTAGATTACTGGTTACATGAAAAACCTGATGGCCCATCTTGCCTCGACTGGGATACCAGACTGCAGATTGCTCGAGGGGCTGTTGGGGGGCTGGCTTATTTGCATCAATCCTGTGAACCCCATATCCTCCATCGAGATATAAAGTCGAGTAACATTCTTTTAGACGAAAATTTTAAAGCTCATTTAGCTGATTTTGGTCTTGCTAGACTCATTCTTCCCTATGATACCCATGTAACAACCGATCTTGTTGGTACCTTGGGCTACATTCCACCCGAGTACGGACAATCCTCAGTCGCGACCTACAAAGGGGATGTATACAGTTTTGGAGTTGTTTTATTAGAGCTTTTGACTGGTAAAAGGCCAATCGATATGTGCAGACCGAAAGGACTTCGAGACTTGATCTCTTGGGTGTTCCAATTGAGGAAAGACAGAAAAGTAAGCGAAGTGTTTGACCCATTAGTATACGATAAGAAGAACGAGACAGCGATGGCTGAAGTTCTTGATATAGCATGTCTTTGCTTGTGTAAGGAACCTAAAGAGAGGCCTTCTACTCAACAGCTAGTTTCTTGGCTTGACAAAGTAAGTTAA | 3018 | 40.92 | MVLQNFFSILLPISLFLQFHLSRSQNLIICHSNDSNALQDFHSSLSSQIDGLHTNCSTNCCTCIGVTCDSSGRVVKIELGGRKLVGQLPISIARLERLRVLNLSSNSLTGSIPLALFQLPYLEVLDLSFNRFLGSISTGNIDLPSLRILNVSHNSFNGVLPFGVCVNSSRIEILSLGFNDFVGMFPFQLAECVSLKRLHLESNFISGGIPDEVSGLRKLTHLCVQNNKLSGSLSSVVGNLTTLVRLDLSSNEFFGEIPDVFYSSVNLSYFVAESNRFSGRIPNSLSNSASLTVLNLRNNSIGGILDLNCTAMRSLVTLDLGSNRFHGSIPSNLPSCTKLRSINLARNKLGGQIPESFRNFHSLSYLSLTNTSIVNVSSALNILQHCQNLSTVVLTFNFHGEVLGDDPNLNFNSLQVFIIANCGLKGMIPQWLRGSNKLQMLDLSWNRLGGNIPSWFGEFQFLFYLDLSNNSFIGGIPKEMTEMKSYIDRNFLFDETASPDFSLFVKKNGTGLQYNQLWRLPPTLNLSLNNLSGPIWPEFGNLKEILVLDLKINSLSGSIPSSLSGMVSLETLDLSHNKLSGIIPPSLQKLNFLSKFSVAYNQLHGAILKGGQFHTFGNSSFEGNNFCVQGDLCASINRNPLVVSRKSRTVMGSLIGIILGIIFGIIFLATLVVVFMLRAPRGRVGDPENEVPNVDNNDLEEVKAGLVVLFQNNNNESLSLDDILKSTNDFDQENIIGCGGFGLVYRATLPDGRKVAIKRLSGDCGQMDREFRAEIETLSRAQHPNLVLLQGYCMYKNDRLLIYSYMENGSLDYWLHEKPDGPSCLDWDTRLQIARGAVGGLAYLHQSCEPHILHRDIKSSNILLDENFKAHLADFGLARLILPYDTHVTTDLVGTLGYIPPEYGQSSVATYKGDVYSFGVVLLELLTGKRPIDMCRPKGLRDLISWVFQLRKDRKVSEVFDPLVYDKKNETAMAEVLDIACLCLCKEPKERPSTQQLVSWLDKVS | 1005 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 257189 | 260206 | + | Lsi11G000250.1 | Lsi11g00025 | 673192 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g00025 | 1005 | Gene3D | Ribonuclease Inhibitor | 31 | 308 | IPR032675 | - | |
Lsi11g00025 | 1005 | Pfam | Protein kinase domain | 731 | 999 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi11g00025 | 1005 | ProSitePatterns | Protein kinases ATP-binding region signature. | 736 | 758 | IPR017441 | GO:0005524 | |
Lsi11g00025 | 1005 | ProSiteProfiles | Leucine-rich repeat profile. | 290 | 311 | IPR001611 | GO:0005515 | |
Lsi11g00025 | 1005 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 852 | 864 | IPR008271 | GO:0004672|GO:0006468 | |
Lsi11g00025 | 1005 | ProSiteProfiles | Leucine-rich repeat profile. | 568 | 589 | IPR001611 | GO:0005515 | |
Lsi11g00025 | 1005 | SMART | serkin_6 | 730 | 1001 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi11g00025 | 1005 | Gene3D | Phosphorylase Kinase; domain 1 | 693 | 805 | - | - | |
Lsi11g00025 | 1005 | SUPERFAMILY | RNI-like | 169 | 478 | - | - | |
Lsi11g00025 | 1005 | PANTHER | RECEPTOR-LIKE PROTEIN 55 | 78 | 214 | - | - | |
Lsi11g00025 | 1005 | PANTHER | RECEPTOR-LIKE PROTEIN 55 | 171 | 1004 | - | - | |
Lsi11g00025 | 1005 | Pfam | Leucine Rich Repeat | 437 | 457 | IPR001611 | GO:0005515 | |
Lsi11g00025 | 1005 | PANTHER | TYROSINE-SULFATED GLYCOPEPTIDE RECEPTOR 1 | 141 | 243 | - | - | |
Lsi11g00025 | 1005 | PANTHER | TYROSINE-SULFATED GLYCOPEPTIDE RECEPTOR 1 | 171 | 1004 | - | - | |
Lsi11g00025 | 1005 | ProSiteProfiles | Protein kinase domain profile. | 730 | 1001 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi11g00025 | 1005 | SUPERFAMILY | L domain-like | 512 | 627 | - | - | |
Lsi11g00025 | 1005 | PANTHER | TYROSINE-SULFATED GLYCOPEPTIDE RECEPTOR 1 | 78 | 214 | - | - | |
Lsi11g00025 | 1005 | Pfam | Leucine rich repeat | 523 | 579 | IPR001611 | GO:0005515 | |
Lsi11g00025 | 1005 | Pfam | Leucine rich repeat | 313 | 373 | IPR001611 | GO:0005515 | |
Lsi11g00025 | 1005 | Pfam | Leucine rich repeat | 97 | 155 | IPR001611 | GO:0005515 | |
Lsi11g00025 | 1005 | SUPERFAMILY | Protein kinase-like (PK-like) | 714 | 1001 | IPR011009 | - | |
Lsi11g00025 | 1005 | SMART | LRR_typ_2 | 312 | 336 | IPR003591 | - | |
Lsi11g00025 | 1005 | SMART | LRR_typ_2 | 566 | 589 | IPR003591 | - | |
Lsi11g00025 | 1005 | SMART | LRR_typ_2 | 95 | 119 | IPR003591 | - | |
Lsi11g00025 | 1005 | SMART | LRR_typ_2 | 143 | 167 | IPR003591 | - | |
Lsi11g00025 | 1005 | SMART | LRR_typ_2 | 240 | 263 | IPR003591 | - | |
Lsi11g00025 | 1005 | SMART | LRR_typ_2 | 216 | 239 | IPR003591 | - | |
Lsi11g00025 | 1005 | PANTHER | RECEPTOR-LIKE PROTEIN 55 | 141 | 243 | - | - | |
Lsi11g00025 | 1005 | Gene3D | Transferase(Phosphotransferase) domain 1 | 806 | 1004 | - | - | |
Lsi11g00025 | 1005 | PRINTS | Leucine-rich repeat signature | 98 | 111 | - | - | |
Lsi11g00025 | 1005 | PRINTS | Leucine-rich repeat signature | 566 | 579 | - | - | |
Lsi11g00025 | 1005 | Gene3D | Ribonuclease Inhibitor | 309 | 635 | IPR032675 | - | |
Lsi11g00025 | 1005 | SUPERFAMILY | L domain-like | 58 | 161 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi05g00137 | Lsi-Chr5:2036081 | Lsi11g00025 | Lsi-Chr11:257189 | 0 | dispersed | |
Lsi09g00748 | Lsi-Chr9:8577757 | Lsi11g00025 | Lsi-Chr11:257189 | 2.14E-166 | dispersed | |
Lsi11g00025 | Lsi-Chr11:257189 | Lsi05g01245 | Lsi-Chr5:20257695 | 1.60E-42 | dispersed | |
Lsi11g00025 | Lsi-Chr11:257189 | Lsi05g01810 | Lsi-Chr5:25345800 | 2.34E-30 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
84001 | PF00069 | Pkinase | 6.30E-46 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g00025 | - | - | bhj:120069286 | 1757.65 |