Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g00037 | ATGGCTGCATCTTCTTCCTCAGTTCCACTTTTTGGAGTTCGAGAAGAAGGGCAGATGAGAGTTCAGCAACAGCAACAGCAACAGCAACAGCAACAGCAGGTAGCAGCAGCAGCAGCTCCCTCTAATTCCTCCACTGCTCCACCTCCTCCTCAACAACCCCAGAAGAAAAAGAGAAACCAACCAGGAACTCCAAGCAAGGGAAATTGTTGTGTTGTGTTGTGTGTGTTTTCAGATCCAGATGCGGAAGTGATAGCGTTGAGTCCAAAGACATTAATGGCAACAAACAGATTCATATGTGAAGTATGTAACAAAGGATTTCAAAGAGAGCAAAATCTACAACTACACAGAAGAGGACATAATTTGCCATGGAAATTAAAGCAAAAAAGCACAAAAGAGCCAAAAAGAAAAGTGTATTTATGCCCAGAACCCACATGCGTACACCATGACCCTTCAAGAGCACTTGGAGATTTAACTGGCATCAAAAAGCACTACTCCCGAAAGCACGGCGAGAAGAAGTGGAAGTGTGATAAATGCTCTAAACGCTACGCCGTTCAATCTGACTGGAAAGCCCATTCCAAAACCTGTGGTACCAGAGAATACCGTTGCGATTGTGGCACTCTCTTCTCCAGACGGGACAGTTTCATTACTCATAGAGCCTTTTGTGATGCATTGGCTCAAGAAAGTGCAAGACACCCACCAAATTTAGGGCCAGCCATTGGAAGCCATTTATATGGAGCTAATAGCAATGTGGGTTTGACATTATCACAAGTCCCTCAAATCTCTTCACTTCAAGACCACACCAATATTGCTCAATCACCCCACGACGTCCTCCGTCTCGGTGGCGGTCGAACCGGCCAATTCACTCATCTCCTCCCTCCTTCTATTGCCTCTTCCTTCCGACCCCCGCCACAACAAGCAATGCCGTCCTCCAATGCCTTCTTCCTTTCGGATCAAACTAACCAAAATAGCTTCCATGAAGATCATCATCAAAGCCAATCCCAACAAGGGTTGTTTGGAAATAAAGCCTTTCATGGCTTAATGCAATTCCCTTCTGATATCCAAACCCATGCAAGTAGTAACAACAACAACAACAATTCTGCCTCAAATCTCTTCAATTTGGGCTTCATTTCAAATCCAACGGGTGATAATACTTCCAATATCAACAATAACAATGACACCAACACTAACAATAGCAACAGCAGCAGCAACAACAACAATCTTCCATCCTCTTTGTTAAACCAATTCAATGGAACAAACAATAGCAACAATGACGGTCCTGCATCTAATATTTTCGCTGTTAACATAATGGGAGATCAAATCAATTCAGCTGCAGTCCCATCTCTCTACAGCACTGCCGCCCCGGGAGGATGTAGTAGCGGTACAAGCGGAGGACCGATCCCACATATGTCCGCTACGGCACTTCTCCAAAAGGCAGCACAATTAGGCTCAACAACGTCGAGTAGCAACACTACAGCAACATTGCTAAGAACGTTCGGAAGCTCCTCGAGCTCAGGTGGTAAGGCGTCTGATAGAACGCTGTTCCCGCCGAGCTACGGCGGAGTAGTGTTCGGCGAAAATGAGAGCAATCTCCAGGATTTGATGAACTCGTTCGCAACTGGGAGCTCGGGAAGTGGGATGTTCGGGAGCGGGATGAGCTCATTCGGGGGATTTGAAGGGAGTAATCGAAGCAATATGGAAAGTTTGGAGGATCCAACGAAGTTACAACAGAATCTAAGCACAGTGAGTATGGGAGCTGGGACAGATAGGTTAACAAGAGACTTCTTAGGGGTTGGACAGATTGTAAGAAGTATGAGCGGCGGCGGCGGTGGTGGTGGCGGCGGTTATTCACAGAGAGAACATAAACAAACGGCGCAAGGGATAGTTTTGGAGGGTAATGAGAGTAATACAGCGCCGTCAAGCCAAGCATTTGGTGGTGGAAATGGAAACTACCAGTGA | 1956 | 46.27 | MAASSSSVPLFGVREEGQMRVQQQQQQQQQQQQVAAAAAPSNSSTAPPPPQQPQKKKRNQPGTPSKGNCCVVLCVFSDPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPPNLGPAIGSHLYGANSNVGLTLSQVPQISSLQDHTNIAQSPHDVLRLGGGRTGQFTHLLPPSIASSFRPPPQQAMPSSNAFFLSDQTNQNSFHEDHHQSQSQQGLFGNKAFHGLMQFPSDIQTHASSNNNNNNSASNLFNLGFISNPTGDNTSNINNNNDTNTNNSNSSSNNNNLPSSLLNQFNGTNNSNNDGPASNIFAVNIMGDQINSAAVPSLYSTAAPGGCSSGTSGGPIPHMSATALLQKAAQLGSTTSSSNTTATLLRTFGSSSSSGGKASDRTLFPPSYGGVVFGENESNLQDLMNSFATGSSGSGMFGSGMSSFGGFEGSNRSNMESLEDPTKLQQNLSTVSMGAGTDRLTRDFLGVGQIVRSMSGGGGGGGGGYSQREHKQTAQGIVLEGNESNTAPSSQAFGGGNGNYQ | 651 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 399348 | 403964 | + | Lsi11G000370.1 | Lsi11g00037 | 673204 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g00037 | 651 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 99 | 119 | IPR013087 | - | |
Lsi11g00037 | 651 | SUPERFAMILY | beta-beta-alpha zinc fingers | 96 | 193 | IPR036236 | - | |
Lsi11g00037 | 651 | MobiDBLite | consensus disorder prediction | 382 | 423 | - | - | |
Lsi11g00037 | 651 | Gene3D | Classic Zinc Finger | 77 | 145 | - | - | |
Lsi11g00037 | 651 | MobiDBLite | consensus disorder prediction | 605 | 651 | - | - | |
Lsi11g00037 | 651 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 1 | 614 | - | - | |
Lsi11g00037 | 651 | PANTHER | ZINC FINGER PROTEIN, PUTATIVE-RELATED | 1 | 614 | - | - | |
Lsi11g00037 | 651 | Gene3D | Classic Zinc Finger | 151 | 230 | - | - | |
Lsi11g00037 | 651 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 97 | 119 | IPR013087 | - | |
Lsi11g00037 | 651 | MobiDBLite | consensus disorder prediction | 1 | 64 | - | - | |
Lsi11g00037 | 651 | SMART | c2h2final6 | 97 | 119 | IPR013087 | - | |
Lsi11g00037 | 651 | SMART | c2h2final6 | 173 | 193 | IPR013087 | - | |
Lsi11g00037 | 651 | SMART | c2h2final6 | 138 | 168 | IPR013087 | - | |
Lsi11g00037 | 651 | MobiDBLite | consensus disorder prediction | 18 | 42 | - | - | |
Lsi11g00037 | 651 | MobiDBLite | consensus disorder prediction | 618 | 651 | - | - | |
Lsi11g00037 | 651 | Pfam | Zinc-finger double-stranded RNA-binding | 97 | 119 | IPR022755 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi10g00083 | Lsi-Chr10:1365870 | Lsi11g00037 | Lsi-Chr11:399348 | 1.66E-102 | dispersed | |
Lsi11g00037 | Lsi-Chr11:399348 | Lsi01g00694 | Lsi-Chr1:5544880 | 4.09E-105 | dispersed | |
Lsi11g00037 | Lsi-Chr11:399348 | Lsi03g02034 | Lsi-Chr3:31704220 | 7.70E-109 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26122 | PF12171 | zf-C2H2_jaz | 4.10E-05 | CL0361 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g00037 | K25870 | - | csv:101219959 | 973.0 |