Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00037 ATGGCTGCATCTTCTTCCTCAGTTCCACTTTTTGGAGTTCGAGAAGAAGGGCAGATGAGAGTTCAGCAACAGCAACAGCAACAGCAACAGCAACAGCAGGTAGCAGCAGCAGCAGCTCCCTCTAATTCCTCCACTGCTCCACCTCCTCCTCAACAACCCCAGAAGAAAAAGAGAAACCAACCAGGAACTCCAAGCAAGGGAAATTGTTGTGTTGTGTTGTGTGTGTTTTCAGATCCAGATGCGGAAGTGATAGCGTTGAGTCCAAAGACATTAATGGCAACAAACAGATTCATATGTGAAGTATGTAACAAAGGATTTCAAAGAGAGCAAAATCTACAACTACACAGAAGAGGACATAATTTGCCATGGAAATTAAAGCAAAAAAGCACAAAAGAGCCAAAAAGAAAAGTGTATTTATGCCCAGAACCCACATGCGTACACCATGACCCTTCAAGAGCACTTGGAGATTTAACTGGCATCAAAAAGCACTACTCCCGAAAGCACGGCGAGAAGAAGTGGAAGTGTGATAAATGCTCTAAACGCTACGCCGTTCAATCTGACTGGAAAGCCCATTCCAAAACCTGTGGTACCAGAGAATACCGTTGCGATTGTGGCACTCTCTTCTCCAGACGGGACAGTTTCATTACTCATAGAGCCTTTTGTGATGCATTGGCTCAAGAAAGTGCAAGACACCCACCAAATTTAGGGCCAGCCATTGGAAGCCATTTATATGGAGCTAATAGCAATGTGGGTTTGACATTATCACAAGTCCCTCAAATCTCTTCACTTCAAGACCACACCAATATTGCTCAATCACCCCACGACGTCCTCCGTCTCGGTGGCGGTCGAACCGGCCAATTCACTCATCTCCTCCCTCCTTCTATTGCCTCTTCCTTCCGACCCCCGCCACAACAAGCAATGCCGTCCTCCAATGCCTTCTTCCTTTCGGATCAAACTAACCAAAATAGCTTCCATGAAGATCATCATCAAAGCCAATCCCAACAAGGGTTGTTTGGAAATAAAGCCTTTCATGGCTTAATGCAATTCCCTTCTGATATCCAAACCCATGCAAGTAGTAACAACAACAACAACAATTCTGCCTCAAATCTCTTCAATTTGGGCTTCATTTCAAATCCAACGGGTGATAATACTTCCAATATCAACAATAACAATGACACCAACACTAACAATAGCAACAGCAGCAGCAACAACAACAATCTTCCATCCTCTTTGTTAAACCAATTCAATGGAACAAACAATAGCAACAATGACGGTCCTGCATCTAATATTTTCGCTGTTAACATAATGGGAGATCAAATCAATTCAGCTGCAGTCCCATCTCTCTACAGCACTGCCGCCCCGGGAGGATGTAGTAGCGGTACAAGCGGAGGACCGATCCCACATATGTCCGCTACGGCACTTCTCCAAAAGGCAGCACAATTAGGCTCAACAACGTCGAGTAGCAACACTACAGCAACATTGCTAAGAACGTTCGGAAGCTCCTCGAGCTCAGGTGGTAAGGCGTCTGATAGAACGCTGTTCCCGCCGAGCTACGGCGGAGTAGTGTTCGGCGAAAATGAGAGCAATCTCCAGGATTTGATGAACTCGTTCGCAACTGGGAGCTCGGGAAGTGGGATGTTCGGGAGCGGGATGAGCTCATTCGGGGGATTTGAAGGGAGTAATCGAAGCAATATGGAAAGTTTGGAGGATCCAACGAAGTTACAACAGAATCTAAGCACAGTGAGTATGGGAGCTGGGACAGATAGGTTAACAAGAGACTTCTTAGGGGTTGGACAGATTGTAAGAAGTATGAGCGGCGGCGGCGGTGGTGGTGGCGGCGGTTATTCACAGAGAGAACATAAACAAACGGCGCAAGGGATAGTTTTGGAGGGTAATGAGAGTAATACAGCGCCGTCAAGCCAAGCATTTGGTGGTGGAAATGGAAACTACCAGTGA 1956 46.27 MAASSSSVPLFGVREEGQMRVQQQQQQQQQQQQVAAAAAPSNSSTAPPPPQQPQKKKRNQPGTPSKGNCCVVLCVFSDPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPPNLGPAIGSHLYGANSNVGLTLSQVPQISSLQDHTNIAQSPHDVLRLGGGRTGQFTHLLPPSIASSFRPPPQQAMPSSNAFFLSDQTNQNSFHEDHHQSQSQQGLFGNKAFHGLMQFPSDIQTHASSNNNNNNSASNLFNLGFISNPTGDNTSNINNNNDTNTNNSNSSSNNNNLPSSLLNQFNGTNNSNNDGPASNIFAVNIMGDQINSAAVPSLYSTAAPGGCSSGTSGGPIPHMSATALLQKAAQLGSTTSSSNTTATLLRTFGSSSSSGGKASDRTLFPPSYGGVVFGENESNLQDLMNSFATGSSGSGMFGSGMSSFGGFEGSNRSNMESLEDPTKLQQNLSTVSMGAGTDRLTRDFLGVGQIVRSMSGGGGGGGGGYSQREHKQTAQGIVLEGNESNTAPSSQAFGGGNGNYQ 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 399348 403964 + Lsi11G000370.1 Lsi11g00037 673204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00037 651 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Lsi11g00037 651 SUPERFAMILY beta-beta-alpha zinc fingers 96 193 IPR036236 -
Lsi11g00037 651 MobiDBLite consensus disorder prediction 382 423 - -
Lsi11g00037 651 Gene3D Classic Zinc Finger 77 145 - -
Lsi11g00037 651 MobiDBLite consensus disorder prediction 605 651 - -
Lsi11g00037 651 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 614 - -
Lsi11g00037 651 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 614 - -
Lsi11g00037 651 Gene3D Classic Zinc Finger 151 230 - -
Lsi11g00037 651 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 119 IPR013087 -
Lsi11g00037 651 MobiDBLite consensus disorder prediction 1 64 - -
Lsi11g00037 651 SMART c2h2final6 97 119 IPR013087 -
Lsi11g00037 651 SMART c2h2final6 173 193 IPR013087 -
Lsi11g00037 651 SMART c2h2final6 138 168 IPR013087 -
Lsi11g00037 651 MobiDBLite consensus disorder prediction 18 42 - -
Lsi11g00037 651 MobiDBLite consensus disorder prediction 618 651 - -
Lsi11g00037 651 Pfam Zinc-finger double-stranded RNA-binding 97 119 IPR022755 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00083 Lsi-Chr10:1365870 Lsi11g00037 Lsi-Chr11:399348 1.66E-102 dispersed
Lsi11g00037 Lsi-Chr11:399348 Lsi01g00694 Lsi-Chr1:5544880 4.09E-105 dispersed
Lsi11g00037 Lsi-Chr11:399348 Lsi03g02034 Lsi-Chr3:31704220 7.70E-109 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26122 PF12171 zf-C2H2_jaz 4.10E-05 CL0361 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00037 K25870 - csv:101219959 973.0