Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00044 ATGATGGAGGAAGATGCCAAAGAACAGCCGAAGGCTACAGAACTTCAAGCAATGAAAACCCATGTTTCTCAGTTGCCTTGCGACGGCGATGGCATTTGCATGCTCTGCAAGGCCAAGCCTTCCGACTTGGAGACAATCACTTGCAAAACTTGCGTCACCCCTTGGCACGTTAGTTGTCTCTCAAATCCCCCTGAAACCCTTGCATCCACCCTTCAATGGGACTGTCCTGATTGTTCCACTCCTCCCGAAGATGTTCCCCTTCCTCCGCCAGGAAACCATTCACTCCCCACTGCGCCTTCTAGTGACCTTGTTGCTGCGATTCGAGCCATTGAGGCCGATGTCTCCCTTACTGACCGTGAGAAGGCAAAGAAGCGCCAGGAACTTCTCAGCGGAAAGTTGCAGTCCGACAAGGATGACCATGATACAAACAAGGAAAAGAAAAAAAAGGGGGACGATGTTTTTGATTTGTTTGACGAGAGATTGAATTGCTCCTTCTGCATGCAGTTACCAGAAAGGCCCGTCACCTTTCTAGTTCAGGAATCAGTTAAAACTCCATGTGGCCACAATTTCTGCTTAAAATGTTTCCAGAAGTGGATTGGACAAGGAAAGAACACTTGTGCAAAGTGCCGCTGCGTGATTCCCTCCAAAATGGCTAGCCAGCCCCGTATTAACTCCACCCTTGTAGTGGCCATTCGTATGGCTAAATTGTCAAAATCATTTGCTTCTGGAGGGCCTCAGAAGGTTTATCATTTTGTCCACAATCAAAATAGACCAGATAAAGCCTATACCACTGATCGGGCACAAAAAAAAGGAAAAGCTAATGCTGCAAGTGGAAAAATATTTGTTACAATTCCATCTGATCATTTTGGTCCTATTCCTCCCGAAAATGATCCTGAGAGAAACCAGGGTGTTCTGGTTGGTGAATGCTGGGAGGATAGGCTAGAATGTCGTCAATGGGGCACTCACTTTCCACATGTTGCAGGTATAGCGGGACAGTCAAGTATTGGTGCACAGTCGGTTGTTCTTTCTGGTGGCTACCAGGATGATGAAGATCATGGGGAGTGGTTTCTCTACACCGGAAGGTCTCTCTTTTCTTCTTCTCTTGCTGCTGCTTCTGTACTCTATGCAATCTCACAAAGAAAAGCGTTCCTCGTATGCCCCAGAGAAGGGATTGCGGGCTTTAAGGTATGTCGCTATTTATTTGTTAGATGCGACAATGATCCTGCTCCATGGACAAGCGATGAACATGGAGATCGACCTAGACCCTTACCTGCAATTTCAGAGTTGAAAAAAGCCACAGATATTACGGAGAGGAAGGAAGGCCCATCATGGGACTTTGATGAGAAAGACGGTCGATGGAAGTGGAACAAAGATCCACCAACGAGCAAGAGACCAGTTGAAGCTCTAGATTCTAGTGGGAAGAGGTCAAGGATAAGAATTAGGCAATCACATATTATGAGTGTCCGTGAAAAGTTACTGAAAGGTCGGGTAAATAGAGAGTTGTTAGATGTGATCGAGTCATTAAAAAGTAAGATTGAAGAAGGGGATGCAGAATCTGAGAAGCCGTGTGAAGAAGAGATAGATGGGGAAGAGGAGGATGAGGGTGAGGATGAAGGGAAGAAGGGAAAAGATGGAAGCAATGCGAATGAAAGTAGCAGTCCTGTGGAAACGAGGAAGCGAGCAAAAGTGGATGATTTGGAATGA 1704 46.19 MMEEDAKEQPKATELQAMKTHVSQLPCDGDGICMLCKAKPSDLETITCKTCVTPWHVSCLSNPPETLASTLQWDCPDCSTPPEDVPLPPPGNHSLPTAPSSDLVAAIRAIEADVSLTDREKAKKRQELLSGKLQSDKDDHDTNKEKKKKGDDVFDLFDERLNCSFCMQLPERPVTFLVQESVKTPCGHNFCLKCFQKWIGQGKNTCAKCRCVIPSKMASQPRINSTLVVAIRMAKLSKSFASGGPQKVYHFVHNQNRPDKAYTTDRAQKKGKANAASGKIFVTIPSDHFGPIPPENDPERNQGVLVGECWEDRLECRQWGTHFPHVAGIAGQSSIGAQSVVLSGGYQDDEDHGEWFLYTGRSLFSSSLAAASVLYAISQRKAFLVCPREGIAGFKVCRYLFVRCDNDPAPWTSDEHGDRPRPLPAISELKKATDITERKEGPSWDFDEKDGRWKWNKDPPTSKRPVEALDSSGKRSRIRIRQSHIMSVREKLLKGRVNRELLDVIESLKSKIEEGDAESEKPCEEEIDGEEEDEGEDEGKKGKDGSNANESSSPVETRKRAKVDDLE 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 499490 508509 + Lsi11G000440.1 Lsi11g00044 673211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00044 567 MobiDBLite consensus disorder prediction 126 148 - -
Lsi11g00044 567 CDD RING-HC 163 209 - -
Lsi11g00044 567 SUPERFAMILY RING/U-box 162 221 - -
Lsi11g00044 567 ProSiteProfiles YDG domain profile. 299 442 IPR003105 -
Lsi11g00044 567 ProSiteProfiles Zinc finger PHD-type profile. 30 81 IPR019787 -
Lsi11g00044 567 Pfam SAD/SRA domain 302 362 IPR003105 -
Lsi11g00044 567 SMART PHD_3 32 79 IPR001965 -
Lsi11g00044 567 Gene3D - 374 441 IPR036987 -
Lsi11g00044 567 MobiDBLite consensus disorder prediction 512 567 - -
Lsi11g00044 567 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 83 IPR013083 -
Lsi11g00044 567 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 388 494 IPR045134 -
Lsi11g00044 567 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 21 360 IPR045134 -
Lsi11g00044 567 Pfam Zinc finger, C3HC4 type (RING finger) 163 209 IPR018957 GO:0046872
Lsi11g00044 567 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 388 494 - -
Lsi11g00044 567 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 21 360 - -
Lsi11g00044 567 SMART ring_2 163 209 IPR001841 -
Lsi11g00044 567 ProSitePatterns Zinc finger PHD-type signature. 33 78 IPR019786 -
Lsi11g00044 567 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 237 IPR013083 -
Lsi11g00044 567 ProSiteProfiles Zinc finger RING-type profile. 163 210 IPR001841 -
Lsi11g00044 567 Coils Coil 498 518 - -
Lsi11g00044 567 SMART G9a_1 294 407 IPR003105 -
Lsi11g00044 567 Gene3D - 270 370 IPR036987 -
Lsi11g00044 567 SUPERFAMILY FYVE/PHD zinc finger 25 85 IPR011011 -
Lsi11g00044 567 SUPERFAMILY PUA domain-like 273 424 IPR015947 -
Lsi11g00044 567 MobiDBLite consensus disorder prediction 411 476 - -
Lsi11g00044 567 MobiDBLite consensus disorder prediction 519 535 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g02067 Lsi-Chr1:28959581 Lsi11g00044 Lsi-Chr11:499490 0 dispersed
Lsi11g00044 Lsi-Chr11:499490 Lsi05g01779 Lsi-Chr5:25106515 5.49E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00044 K10638 - csv:101219001 863.603