Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g00044 | ATGATGGAGGAAGATGCCAAAGAACAGCCGAAGGCTACAGAACTTCAAGCAATGAAAACCCATGTTTCTCAGTTGCCTTGCGACGGCGATGGCATTTGCATGCTCTGCAAGGCCAAGCCTTCCGACTTGGAGACAATCACTTGCAAAACTTGCGTCACCCCTTGGCACGTTAGTTGTCTCTCAAATCCCCCTGAAACCCTTGCATCCACCCTTCAATGGGACTGTCCTGATTGTTCCACTCCTCCCGAAGATGTTCCCCTTCCTCCGCCAGGAAACCATTCACTCCCCACTGCGCCTTCTAGTGACCTTGTTGCTGCGATTCGAGCCATTGAGGCCGATGTCTCCCTTACTGACCGTGAGAAGGCAAAGAAGCGCCAGGAACTTCTCAGCGGAAAGTTGCAGTCCGACAAGGATGACCATGATACAAACAAGGAAAAGAAAAAAAAGGGGGACGATGTTTTTGATTTGTTTGACGAGAGATTGAATTGCTCCTTCTGCATGCAGTTACCAGAAAGGCCCGTCACCTTTCTAGTTCAGGAATCAGTTAAAACTCCATGTGGCCACAATTTCTGCTTAAAATGTTTCCAGAAGTGGATTGGACAAGGAAAGAACACTTGTGCAAAGTGCCGCTGCGTGATTCCCTCCAAAATGGCTAGCCAGCCCCGTATTAACTCCACCCTTGTAGTGGCCATTCGTATGGCTAAATTGTCAAAATCATTTGCTTCTGGAGGGCCTCAGAAGGTTTATCATTTTGTCCACAATCAAAATAGACCAGATAAAGCCTATACCACTGATCGGGCACAAAAAAAAGGAAAAGCTAATGCTGCAAGTGGAAAAATATTTGTTACAATTCCATCTGATCATTTTGGTCCTATTCCTCCCGAAAATGATCCTGAGAGAAACCAGGGTGTTCTGGTTGGTGAATGCTGGGAGGATAGGCTAGAATGTCGTCAATGGGGCACTCACTTTCCACATGTTGCAGGTATAGCGGGACAGTCAAGTATTGGTGCACAGTCGGTTGTTCTTTCTGGTGGCTACCAGGATGATGAAGATCATGGGGAGTGGTTTCTCTACACCGGAAGGTCTCTCTTTTCTTCTTCTCTTGCTGCTGCTTCTGTACTCTATGCAATCTCACAAAGAAAAGCGTTCCTCGTATGCCCCAGAGAAGGGATTGCGGGCTTTAAGGTATGTCGCTATTTATTTGTTAGATGCGACAATGATCCTGCTCCATGGACAAGCGATGAACATGGAGATCGACCTAGACCCTTACCTGCAATTTCAGAGTTGAAAAAAGCCACAGATATTACGGAGAGGAAGGAAGGCCCATCATGGGACTTTGATGAGAAAGACGGTCGATGGAAGTGGAACAAAGATCCACCAACGAGCAAGAGACCAGTTGAAGCTCTAGATTCTAGTGGGAAGAGGTCAAGGATAAGAATTAGGCAATCACATATTATGAGTGTCCGTGAAAAGTTACTGAAAGGTCGGGTAAATAGAGAGTTGTTAGATGTGATCGAGTCATTAAAAAGTAAGATTGAAGAAGGGGATGCAGAATCTGAGAAGCCGTGTGAAGAAGAGATAGATGGGGAAGAGGAGGATGAGGGTGAGGATGAAGGGAAGAAGGGAAAAGATGGAAGCAATGCGAATGAAAGTAGCAGTCCTGTGGAAACGAGGAAGCGAGCAAAAGTGGATGATTTGGAATGA | 1704 | 46.19 | MMEEDAKEQPKATELQAMKTHVSQLPCDGDGICMLCKAKPSDLETITCKTCVTPWHVSCLSNPPETLASTLQWDCPDCSTPPEDVPLPPPGNHSLPTAPSSDLVAAIRAIEADVSLTDREKAKKRQELLSGKLQSDKDDHDTNKEKKKKGDDVFDLFDERLNCSFCMQLPERPVTFLVQESVKTPCGHNFCLKCFQKWIGQGKNTCAKCRCVIPSKMASQPRINSTLVVAIRMAKLSKSFASGGPQKVYHFVHNQNRPDKAYTTDRAQKKGKANAASGKIFVTIPSDHFGPIPPENDPERNQGVLVGECWEDRLECRQWGTHFPHVAGIAGQSSIGAQSVVLSGGYQDDEDHGEWFLYTGRSLFSSSLAAASVLYAISQRKAFLVCPREGIAGFKVCRYLFVRCDNDPAPWTSDEHGDRPRPLPAISELKKATDITERKEGPSWDFDEKDGRWKWNKDPPTSKRPVEALDSSGKRSRIRIRQSHIMSVREKLLKGRVNRELLDVIESLKSKIEEGDAESEKPCEEEIDGEEEDEGEDEGKKGKDGSNANESSSPVETRKRAKVDDLE | 567 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 499490 | 508509 | + | Lsi11G000440.1 | Lsi11g00044 | 673211 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g00044 | 567 | MobiDBLite | consensus disorder prediction | 126 | 148 | - | - | |
Lsi11g00044 | 567 | CDD | RING-HC | 163 | 209 | - | - | |
Lsi11g00044 | 567 | SUPERFAMILY | RING/U-box | 162 | 221 | - | - | |
Lsi11g00044 | 567 | ProSiteProfiles | YDG domain profile. | 299 | 442 | IPR003105 | - | |
Lsi11g00044 | 567 | ProSiteProfiles | Zinc finger PHD-type profile. | 30 | 81 | IPR019787 | - | |
Lsi11g00044 | 567 | Pfam | SAD/SRA domain | 302 | 362 | IPR003105 | - | |
Lsi11g00044 | 567 | SMART | PHD_3 | 32 | 79 | IPR001965 | - | |
Lsi11g00044 | 567 | Gene3D | - | 374 | 441 | IPR036987 | - | |
Lsi11g00044 | 567 | MobiDBLite | consensus disorder prediction | 512 | 567 | - | - | |
Lsi11g00044 | 567 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 83 | IPR013083 | - | |
Lsi11g00044 | 567 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED | 388 | 494 | IPR045134 | - | |
Lsi11g00044 | 567 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED | 21 | 360 | IPR045134 | - | |
Lsi11g00044 | 567 | Pfam | Zinc finger, C3HC4 type (RING finger) | 163 | 209 | IPR018957 | GO:0046872 | |
Lsi11g00044 | 567 | PANTHER | FINGER PROTEIN, PUTATIVE-RELATED | 388 | 494 | - | - | |
Lsi11g00044 | 567 | PANTHER | FINGER PROTEIN, PUTATIVE-RELATED | 21 | 360 | - | - | |
Lsi11g00044 | 567 | SMART | ring_2 | 163 | 209 | IPR001841 | - | |
Lsi11g00044 | 567 | ProSitePatterns | Zinc finger PHD-type signature. | 33 | 78 | IPR019786 | - | |
Lsi11g00044 | 567 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 111 | 237 | IPR013083 | - | |
Lsi11g00044 | 567 | ProSiteProfiles | Zinc finger RING-type profile. | 163 | 210 | IPR001841 | - | |
Lsi11g00044 | 567 | Coils | Coil | 498 | 518 | - | - | |
Lsi11g00044 | 567 | SMART | G9a_1 | 294 | 407 | IPR003105 | - | |
Lsi11g00044 | 567 | Gene3D | - | 270 | 370 | IPR036987 | - | |
Lsi11g00044 | 567 | SUPERFAMILY | FYVE/PHD zinc finger | 25 | 85 | IPR011011 | - | |
Lsi11g00044 | 567 | SUPERFAMILY | PUA domain-like | 273 | 424 | IPR015947 | - | |
Lsi11g00044 | 567 | MobiDBLite | consensus disorder prediction | 411 | 476 | - | - | |
Lsi11g00044 | 567 | MobiDBLite | consensus disorder prediction | 519 | 535 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g02067 | Lsi-Chr1:28959581 | Lsi11g00044 | Lsi-Chr11:499490 | 0 | dispersed | |
Lsi11g00044 | Lsi-Chr11:499490 | Lsi05g01779 | Lsi-Chr5:25106515 | 5.49E-06 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g00044 | K10638 | - | csv:101219001 | 863.603 |