Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00052 ATGGGTTGCATTTGCTCTAAGGGCATTCCAGCAAACGACTATGTTGCTGAGAATCATTCCAAAGGGAGGCATTTGAAGTCTAATAGATCTTCCAGACATGGGGCTTCATTGAGGAAAGAAGAACCCGTGTTACATCCTGATGGAGGGCAAAGTGATGCAATGGCGCAATTGATATTGAATCAACCTGGGGAAGAGAATGCTGGATCAACATCTGAATCGGATGATGCTGAGAAGGCAACACGCACTGGAAAAGCTGCCAGTGCCAAGCCACTGCGTCAAGAACGACCAACTATGGAGGATGGAGAAAAGAGAGTAGGAGTACATAATAATAATAATAATGCAACACCTAGAATAATCGGTGTTGTAATTGAGGAAAAGGGGGCTTTGGTTATTGCTGGATGGCCTTCTTGGCTGACATCTGTGGCTGGAGAAGCAATCAATGGATGGATTCCTAGAAAGGCAGACTCTTTTCAGAAGTTGGACAAGATTGGACAAGGAACGTACAGCAGTGTGTACAGGGCCCGTGATATTGAAACAAACAAGATTGTTGCATTGAAGAAGGTGCGATTTGCTAACATGGACCCTGAAAGTGTTCGTTTTATGGCCAGGGAAATTCTTATCCTGCGTAGGCTTGACCACCCCAATGTCATGAAGCTTGAAGGTCTTATCACTTCAAGGGTATCGGGCAGTTTATACCTCATATTTGAGTACATGGAACACGATCTTGCAGGGTTGGTAGCAACCCCAGGGATCAAGTTCACTGAAGCACAGATAAAATGCTATATGAAACAGCTGCTTTGTGGCCTTGAACATTGCCATGCGCAGGGAGTTTTGCACCGTGACATCAAGGGCTCAAATCTTCTGATTGACAATAATGGTAATCTAAAGATAGGTGATTTTGGGCTATCAACCTTTTTCCGTTCCCGACAAAAGCAGCCTCTTACAAGTCGTGTGGTAACTTTGTGGTATCGGCCACCTGAGCTTTTGCTTGGTGCAACGGACTATGGAGTTTCTGTAGATTTGTGGAGTGCTGGTTGCATTCTTGCAGAACTGTATGCTGGAAAGCCTATCATGCCTGGAAGAACAGAGGTGGAGCAACTACACAAGATCTTCAAACTCTGTGGCTCCCCGTCTGAAGAATACTGGAAAAAGTCAAAATTACCACATGCCACCATCTTTAAACCTCAACATCCTTACAAGCGGTGTGTTGCTGAGACATTCAAAGACTTCCCTTTCTCTGCGTTGGCCCTTTTGGATGTCCTTCTTGCGGTAGAACCTGATGGCCGTGGAACAGCATCCTCTGCCCTTCAAAGTGAGTTCTTTACCACCGAACCGCTTCCCTCGGATCCCTTTGCTTTGCCAAAGTACCCACCGTGCAAGGAGTTTGATGTGAAGCTTCGAGATGAGGAATCTCGAAGAAGAAGAGCTCCTATCAGTGTTGCACGTGAACATGAAGCAGCTCGTAAGTTTCCCCGAGAATCAAAAGCAATTCCTGCACCAGATGCGAATGCTGAATTGCAGGCATCCATACAGAAGAAACAAGGGCAGCAGAATCCTACAAGTGTCAGTGAAAAGTATAATCACGAAGAGGATGGTGGCTCTGGCTTTTGCATCGAGCCCCCAAAAGAAGCAACGCAAATGCAGCCAACTGCATTGGGTTCTTCACGAAACATGAATGAGAATCAGGGTGATAATCTAAGAGGTTCTTCAGTTGGGGCAAAAGGTGCAGAACTTAGAAAACAGAGATCTTTTATGCAGCATGGTGCTGGACAGTTATCTCGGTATTCCAATTCTGTTGCAGTTCGAGGTGGTTCACGATTTGGCTGTGGTGGAGAAAGTAGTGCTAATTCACACTGGCCAGAAGAGTGTTTTAATGTGTCATATAACCATTTCAATGGTGGTGAATCTTCAGAAAAGCATGAATGGTCTCACCATTTACTAGACAGGCCAAAATCTTCATATAAGATAGATGATCAGTCATCTGGAAAAGAGTCTACTATGAGTTATGCTCCGAAGAAGAGAATTCACTACTCAGGACCATTGATGCCTCCTGGTGGAAACCTTGAGGAAATGTTAAAAGAGCACGAGAAACAAATCCAGCATGCAGTGCGCAAGGCTCGTATTGACAAAGCTAAGACAAAAAAGACGTATGGCGACAAGGGTCAAATGGAATCATTGCTTCACCATGTGAGAAACGGCAATTGA 2205 44.94 MGCICSKGIPANDYVAENHSKGRHLKSNRSSRHGASLRKEEPVLHPDGGQSDAMAQLILNQPGEENAGSTSESDDAEKATRTGKAASAKPLRQERPTMEDGEKRVGVHNNNNNATPRIIGVVIEEKGALVIAGWPSWLTSVAGEAINGWIPRKADSFQKLDKIGQGTYSSVYRARDIETNKIVALKKVRFANMDPESVRFMAREILILRRLDHPNVMKLEGLITSRVSGSLYLIFEYMEHDLAGLVATPGIKFTEAQIKCYMKQLLCGLEHCHAQGVLHRDIKGSNLLIDNNGNLKIGDFGLSTFFRSRQKQPLTSRVVTLWYRPPELLLGATDYGVSVDLWSAGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQHPYKRCVAETFKDFPFSALALLDVLLAVEPDGRGTASSALQSEFFTTEPLPSDPFALPKYPPCKEFDVKLRDEESRRRRAPISVAREHEAARKFPRESKAIPAPDANAELQASIQKKQGQQNPTSVSEKYNHEEDGGSGFCIEPPKEATQMQPTALGSSRNMNENQGDNLRGSSVGAKGAELRKQRSFMQHGAGQLSRYSNSVAVRGGSRFGCGGESSANSHWPEECFNVSYNHFNGGESSEKHEWSHHLLDRPKSSYKIDDQSSGKESTMSYAPKKRIHYSGPLMPPGGNLEEMLKEHEKQIQHAVRKARIDKAKTKKTYGDKGQMESLLHHVRNGN 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 603489 617575 - Lsi11G000520.1 Lsi11g00052 673219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00052 734 MobiDBLite consensus disorder prediction 704 734 - -
Lsi11g00052 734 MobiDBLite consensus disorder prediction 54 69 - -
Lsi11g00052 734 MobiDBLite consensus disorder prediction 467 570 - -
Lsi11g00052 734 Coils Coil 685 705 - -
Lsi11g00052 734 MobiDBLite consensus disorder prediction 19 112 - -
Lsi11g00052 734 MobiDBLite consensus disorder prediction 704 726 - -
Lsi11g00052 734 MobiDBLite consensus disorder prediction 507 523 - -
Lsi11g00052 734 Pfam Protein kinase domain 157 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00052 734 ProSiteProfiles Protein kinase domain profile. 157 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00052 734 PANTHER CELL DIVISION PROTEIN KINASE 107 715 - -
Lsi11g00052 734 MobiDBLite consensus disorder prediction 467 495 - -
Lsi11g00052 734 CDD STKc_CDK9_like 157 441 - -
Lsi11g00052 734 ProSitePatterns Serine/Threonine protein kinases active-site signature. 277 289 IPR008271 GO:0004672|GO:0006468
Lsi11g00052 734 SMART serkin_6 157 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00052 734 ProSitePatterns Protein kinases ATP-binding region signature. 163 186 IPR017441 GO:0005524
Lsi11g00052 734 SUPERFAMILY Protein kinase-like (PK-like) 151 447 IPR011009 -
Lsi11g00052 734 Gene3D Transferase(Phosphotransferase) domain 1 240 480 - -
Lsi11g00052 734 PANTHER BNACNNG19830D PROTEIN 107 715 - -
Lsi11g00052 734 Gene3D Phosphorylase Kinase; domain 1 144 239 - -
Lsi11g00052 734 MobiDBLite consensus disorder prediction 547 568 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g02044 Lsi-Chr1:28227070 Lsi11g00052 Lsi-Chr11:603489 0 dispersed
Lsi01g02045 Lsi-Chr1:28248718 Lsi11g00052 Lsi-Chr11:603489 7.96E-31 dispersed
Lsi05g00144 Lsi-Chr5:2112119 Lsi11g00052 Lsi-Chr11:603489 0 dispersed
Lsi05g01501 Lsi-Chr5:22835363 Lsi11g00052 Lsi-Chr11:603489 0 dispersed
Lsi08g00053 Lsi-Chr8:1230141 Lsi11g00052 Lsi-Chr11:603489 0 dispersed
Lsi10g00900 Lsi-Chr10:13344499 Lsi11g00052 Lsi-Chr11:603489 8.37E-15 dispersed
Lsi11g00052 Lsi-Chr11:603489 Lsi11g00478 Lsi-Chr11:5048834 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84002 PF00069 Pkinase 3.30E-68 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00052 - - csv:101214435 1374.38