Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g00052 | ATGGGTTGCATTTGCTCTAAGGGCATTCCAGCAAACGACTATGTTGCTGAGAATCATTCCAAAGGGAGGCATTTGAAGTCTAATAGATCTTCCAGACATGGGGCTTCATTGAGGAAAGAAGAACCCGTGTTACATCCTGATGGAGGGCAAAGTGATGCAATGGCGCAATTGATATTGAATCAACCTGGGGAAGAGAATGCTGGATCAACATCTGAATCGGATGATGCTGAGAAGGCAACACGCACTGGAAAAGCTGCCAGTGCCAAGCCACTGCGTCAAGAACGACCAACTATGGAGGATGGAGAAAAGAGAGTAGGAGTACATAATAATAATAATAATGCAACACCTAGAATAATCGGTGTTGTAATTGAGGAAAAGGGGGCTTTGGTTATTGCTGGATGGCCTTCTTGGCTGACATCTGTGGCTGGAGAAGCAATCAATGGATGGATTCCTAGAAAGGCAGACTCTTTTCAGAAGTTGGACAAGATTGGACAAGGAACGTACAGCAGTGTGTACAGGGCCCGTGATATTGAAACAAACAAGATTGTTGCATTGAAGAAGGTGCGATTTGCTAACATGGACCCTGAAAGTGTTCGTTTTATGGCCAGGGAAATTCTTATCCTGCGTAGGCTTGACCACCCCAATGTCATGAAGCTTGAAGGTCTTATCACTTCAAGGGTATCGGGCAGTTTATACCTCATATTTGAGTACATGGAACACGATCTTGCAGGGTTGGTAGCAACCCCAGGGATCAAGTTCACTGAAGCACAGATAAAATGCTATATGAAACAGCTGCTTTGTGGCCTTGAACATTGCCATGCGCAGGGAGTTTTGCACCGTGACATCAAGGGCTCAAATCTTCTGATTGACAATAATGGTAATCTAAAGATAGGTGATTTTGGGCTATCAACCTTTTTCCGTTCCCGACAAAAGCAGCCTCTTACAAGTCGTGTGGTAACTTTGTGGTATCGGCCACCTGAGCTTTTGCTTGGTGCAACGGACTATGGAGTTTCTGTAGATTTGTGGAGTGCTGGTTGCATTCTTGCAGAACTGTATGCTGGAAAGCCTATCATGCCTGGAAGAACAGAGGTGGAGCAACTACACAAGATCTTCAAACTCTGTGGCTCCCCGTCTGAAGAATACTGGAAAAAGTCAAAATTACCACATGCCACCATCTTTAAACCTCAACATCCTTACAAGCGGTGTGTTGCTGAGACATTCAAAGACTTCCCTTTCTCTGCGTTGGCCCTTTTGGATGTCCTTCTTGCGGTAGAACCTGATGGCCGTGGAACAGCATCCTCTGCCCTTCAAAGTGAGTTCTTTACCACCGAACCGCTTCCCTCGGATCCCTTTGCTTTGCCAAAGTACCCACCGTGCAAGGAGTTTGATGTGAAGCTTCGAGATGAGGAATCTCGAAGAAGAAGAGCTCCTATCAGTGTTGCACGTGAACATGAAGCAGCTCGTAAGTTTCCCCGAGAATCAAAAGCAATTCCTGCACCAGATGCGAATGCTGAATTGCAGGCATCCATACAGAAGAAACAAGGGCAGCAGAATCCTACAAGTGTCAGTGAAAAGTATAATCACGAAGAGGATGGTGGCTCTGGCTTTTGCATCGAGCCCCCAAAAGAAGCAACGCAAATGCAGCCAACTGCATTGGGTTCTTCACGAAACATGAATGAGAATCAGGGTGATAATCTAAGAGGTTCTTCAGTTGGGGCAAAAGGTGCAGAACTTAGAAAACAGAGATCTTTTATGCAGCATGGTGCTGGACAGTTATCTCGGTATTCCAATTCTGTTGCAGTTCGAGGTGGTTCACGATTTGGCTGTGGTGGAGAAAGTAGTGCTAATTCACACTGGCCAGAAGAGTGTTTTAATGTGTCATATAACCATTTCAATGGTGGTGAATCTTCAGAAAAGCATGAATGGTCTCACCATTTACTAGACAGGCCAAAATCTTCATATAAGATAGATGATCAGTCATCTGGAAAAGAGTCTACTATGAGTTATGCTCCGAAGAAGAGAATTCACTACTCAGGACCATTGATGCCTCCTGGTGGAAACCTTGAGGAAATGTTAAAAGAGCACGAGAAACAAATCCAGCATGCAGTGCGCAAGGCTCGTATTGACAAAGCTAAGACAAAAAAGACGTATGGCGACAAGGGTCAAATGGAATCATTGCTTCACCATGTGAGAAACGGCAATTGA | 2205 | 44.94 | MGCICSKGIPANDYVAENHSKGRHLKSNRSSRHGASLRKEEPVLHPDGGQSDAMAQLILNQPGEENAGSTSESDDAEKATRTGKAASAKPLRQERPTMEDGEKRVGVHNNNNNATPRIIGVVIEEKGALVIAGWPSWLTSVAGEAINGWIPRKADSFQKLDKIGQGTYSSVYRARDIETNKIVALKKVRFANMDPESVRFMAREILILRRLDHPNVMKLEGLITSRVSGSLYLIFEYMEHDLAGLVATPGIKFTEAQIKCYMKQLLCGLEHCHAQGVLHRDIKGSNLLIDNNGNLKIGDFGLSTFFRSRQKQPLTSRVVTLWYRPPELLLGATDYGVSVDLWSAGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQHPYKRCVAETFKDFPFSALALLDVLLAVEPDGRGTASSALQSEFFTTEPLPSDPFALPKYPPCKEFDVKLRDEESRRRRAPISVAREHEAARKFPRESKAIPAPDANAELQASIQKKQGQQNPTSVSEKYNHEEDGGSGFCIEPPKEATQMQPTALGSSRNMNENQGDNLRGSSVGAKGAELRKQRSFMQHGAGQLSRYSNSVAVRGGSRFGCGGESSANSHWPEECFNVSYNHFNGGESSEKHEWSHHLLDRPKSSYKIDDQSSGKESTMSYAPKKRIHYSGPLMPPGGNLEEMLKEHEKQIQHAVRKARIDKAKTKKTYGDKGQMESLLHHVRNGN | 734 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 603489 | 617575 | - | Lsi11G000520.1 | Lsi11g00052 | 673219 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g00052 | 734 | MobiDBLite | consensus disorder prediction | 704 | 734 | - | - | |
Lsi11g00052 | 734 | MobiDBLite | consensus disorder prediction | 54 | 69 | - | - | |
Lsi11g00052 | 734 | MobiDBLite | consensus disorder prediction | 467 | 570 | - | - | |
Lsi11g00052 | 734 | Coils | Coil | 685 | 705 | - | - | |
Lsi11g00052 | 734 | MobiDBLite | consensus disorder prediction | 19 | 112 | - | - | |
Lsi11g00052 | 734 | MobiDBLite | consensus disorder prediction | 704 | 726 | - | - | |
Lsi11g00052 | 734 | MobiDBLite | consensus disorder prediction | 507 | 523 | - | - | |
Lsi11g00052 | 734 | Pfam | Protein kinase domain | 157 | 441 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi11g00052 | 734 | ProSiteProfiles | Protein kinase domain profile. | 157 | 441 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi11g00052 | 734 | PANTHER | CELL DIVISION PROTEIN KINASE | 107 | 715 | - | - | |
Lsi11g00052 | 734 | MobiDBLite | consensus disorder prediction | 467 | 495 | - | - | |
Lsi11g00052 | 734 | CDD | STKc_CDK9_like | 157 | 441 | - | - | |
Lsi11g00052 | 734 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 277 | 289 | IPR008271 | GO:0004672|GO:0006468 | |
Lsi11g00052 | 734 | SMART | serkin_6 | 157 | 441 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi11g00052 | 734 | ProSitePatterns | Protein kinases ATP-binding region signature. | 163 | 186 | IPR017441 | GO:0005524 | |
Lsi11g00052 | 734 | SUPERFAMILY | Protein kinase-like (PK-like) | 151 | 447 | IPR011009 | - | |
Lsi11g00052 | 734 | Gene3D | Transferase(Phosphotransferase) domain 1 | 240 | 480 | - | - | |
Lsi11g00052 | 734 | PANTHER | BNACNNG19830D PROTEIN | 107 | 715 | - | - | |
Lsi11g00052 | 734 | Gene3D | Phosphorylase Kinase; domain 1 | 144 | 239 | - | - | |
Lsi11g00052 | 734 | MobiDBLite | consensus disorder prediction | 547 | 568 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g02044 | Lsi-Chr1:28227070 | Lsi11g00052 | Lsi-Chr11:603489 | 0 | dispersed | |
Lsi01g02045 | Lsi-Chr1:28248718 | Lsi11g00052 | Lsi-Chr11:603489 | 7.96E-31 | dispersed | |
Lsi05g00144 | Lsi-Chr5:2112119 | Lsi11g00052 | Lsi-Chr11:603489 | 0 | dispersed | |
Lsi05g01501 | Lsi-Chr5:22835363 | Lsi11g00052 | Lsi-Chr11:603489 | 0 | dispersed | |
Lsi08g00053 | Lsi-Chr8:1230141 | Lsi11g00052 | Lsi-Chr11:603489 | 0 | dispersed | |
Lsi10g00900 | Lsi-Chr10:13344499 | Lsi11g00052 | Lsi-Chr11:603489 | 8.37E-15 | dispersed | |
Lsi11g00052 | Lsi-Chr11:603489 | Lsi11g00478 | Lsi-Chr11:5048834 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
84002 | PF00069 | Pkinase | 3.30E-68 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g00052 | - | - | csv:101214435 | 1374.38 |