Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g00053 | ATGATTCTCAATTTCTCTGTTTTCTTTCTGTTTGTTAGTCAACAAGTTCTTTATCTGAATCTAGAGCGTGGAGCATTTCTCCCTTCAGCCATGGCACTGGTCTTACACGCAGGAAAGACAAATAAAAATTCGTTCAAGGCTCTCATTGCTGCAGAATACAATGGAGTCGAAGTGAAATTGGTCCCAGACTTTGAGATGGGAGTCTCAAACAAGACTCCGGAGTTTATCAAGATGAACCCTATTGGGAAGGTCCCGGTATTAGAAACGCCTGATGGCCCCATATTCGAGAGTAACGCTATAGCCCGTTATGTTGCACGCTTGAAGGCTGATAGTCCTCTCTATGGTTCATCTCTGATAGATTATGGGCACATTGAACAATGGATTGATTTTGCATCATTGGAGATTGATTCTAATATTGTGACTTGGTTTAGACCTAGAATTGGGAGAGCTGTTTATCTTCCTCCTGTCGAGGAAGCTGCAATTGCTGCATTGAAGAGAGCTTTGGGAGCTTTGAATACACACCTGGCTTCAAATACATATCTAGTTGGTCATTCTGTTACATTAGGTGACATAATCTTGACTTGCAACCTATTATTGGGTTTTACTAAGCTCATGACTAAGAGCTTTACCTCGGAGTTCCCACATGTTGAGCGGTACTTCTGGACCTTGGTCAATCAACTAAACTTCAAAAAAATCCTGGGTGAGGTGAAGCAGGCAGAGTCAATTCCACCTGTTCAATCTGCAACGAAACCTGATGAATCTTCTAAGCAAAAGCACAAGGATGAGGTAAAGAAAGAACCTAAAAAGGAAGCTGAAAAAGAGAAGCCAAAGGCTGTAGCTGGCGACGGAGAGGATGAGGCACCAAAGCCAAAGCCCAAAAATCCTCTTGATTTGCTACCTCCGAGTAAGATGATTCTGGATGAGTGGAAGCGGCTATACTCGAATACCAAAACCAACTTTCGGGAGGTTGCAATTAAAGGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTTTGGTTCTGTGATTACAAGTACAACGATGAGAATACTGTTTCATTCGTGACTTTGAACAAGGTTGGTGGCTTTCTCCAGCGAATGGATCTCACTCGTAAGTATGCTTTCGGGAAGATGTTAGTGATTGGATCAGAACCTCCATTTAAGGTGAAGGGTTTATGGCTTTTCCGTGGACAAGAGATCCCAAAATTCGTCCTGGACGAGTGCTACGACATGGAACTTTATGAATGGAGGAAGGTTGATATATCAGACGAGGCCCAAAAGGAACGCGTAAACCAGATGATTGAAGATCAGGAGCCTTTTGAAGGGGAGGCTTTGTTGGATGCCAAATGCTTCAAGTGA | 1359 | 43.05 | MILNFSVFFLFVSQQVLYLNLERGAFLPSAMALVLHAGKTNKNSFKALIAAEYNGVEVKLVPDFEMGVSNKTPEFIKMNPIGKVPVLETPDGPIFESNAIARYVARLKADSPLYGSSLIDYGHIEQWIDFASLEIDSNIVTWFRPRIGRAVYLPPVEEAAIAALKRALGALNTHLASNTYLVGHSVTLGDIILTCNLLLGFTKLMTKSFTSEFPHVERYFWTLVNQLNFKKILGEVKQAESIPPVQSATKPDESSKQKHKDEVKKEPKKEAEKEKPKAVAGDGEDEAPKPKPKNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLTRKYAFGKMLVIGSEPPFKVKGLWLFRGQEIPKFVLDECYDMELYEWRKVDISDEAQKERVNQMIEDQEPFEGEALLDAKCFK | 452 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 620467 | 623696 | + | Lsi11G000530.1 | Lsi11g00053 | 673220 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g00053 | 452 | MobiDBLite | consensus disorder prediction | 252 | 292 | - | - | |
Lsi11g00053 | 452 | ProSiteProfiles | Elongation factor 1 (EF-1) gamma C-terminal domain profile. | 292 | 452 | IPR001662 | GO:0003746|GO:0006414 | |
Lsi11g00053 | 452 | ProSiteProfiles | Soluble glutathione S-transferase N-terminal domain profile. | 31 | 112 | IPR004045 | - | |
Lsi11g00053 | 452 | SFLD | Main (cytGST) | 34 | 220 | - | - | |
Lsi11g00053 | 452 | SUPERFAMILY | eEF1-gamma domain | 292 | 452 | IPR036433 | GO:0003746|GO:0006414 | |
Lsi11g00053 | 452 | PANTHER | - | 31 | 452 | - | - | |
Lsi11g00053 | 452 | CDD | GST_N_EF1Bgamma | 33 | 107 | - | - | |
Lsi11g00053 | 452 | Pfam | Glutathione S-transferase, N-terminal domain | 40 | 106 | IPR004045 | - | |
Lsi11g00053 | 452 | SUPERFAMILY | Thioredoxin-like | 30 | 115 | IPR036249 | - | |
Lsi11g00053 | 452 | Gene3D | Translation elongation factor EF1B, gamma chain, conserved domain | 292 | 452 | IPR036433 | GO:0003746|GO:0006414 | |
Lsi11g00053 | 452 | SFLD | Glutathione Transferase (cytosolic) | 34 | 220 | IPR040079 | - | |
Lsi11g00053 | 452 | Pfam | Glutathione S-transferase, C-terminal domain | 158 | 225 | IPR004046 | - | |
Lsi11g00053 | 452 | Pfam | Elongation factor 1 gamma, conserved domain | 291 | 399 | IPR001662 | GO:0003746|GO:0006414 | |
Lsi11g00053 | 452 | MobiDBLite | consensus disorder prediction | 242 | 299 | - | - | |
Lsi11g00053 | 452 | SMART | EF1G_2 | 291 | 399 | IPR001662 | GO:0003746|GO:0006414 | |
Lsi11g00053 | 452 | CDD | GST_C_EF1Bgamma_like | 120 | 240 | - | - | |
Lsi11g00053 | 452 | Gene3D | - | 110 | 246 | - | - | |
Lsi11g00053 | 452 | PANTHER | ELONGATION FACTOR 1-GAMMA 1-RELATED | 31 | 452 | IPR044628 | GO:0004364 | |
Lsi11g00053 | 452 | Gene3D | Glutaredoxin | 30 | 104 | - | - | |
Lsi11g00053 | 452 | ProSiteProfiles | Soluble glutathione S-transferase C-terminal domain profile. | 117 | 245 | IPR010987 | - | |
Lsi11g00053 | 452 | SUPERFAMILY | GST C-terminal domain-like | 103 | 244 | IPR036282 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi05g00730 | Lsi-Chr5:9954594 | Lsi11g00053 | Lsi-Chr11:620467 | 0 | dispersed | |
Lsi08g01285 | Lsi-Chr8:21216527 | Lsi11g00053 | Lsi-Chr11:620467 | 3.49E-11 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g00053 | K03233 | - | zju:107412556 | 716.072 |