Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00053 ATGATTCTCAATTTCTCTGTTTTCTTTCTGTTTGTTAGTCAACAAGTTCTTTATCTGAATCTAGAGCGTGGAGCATTTCTCCCTTCAGCCATGGCACTGGTCTTACACGCAGGAAAGACAAATAAAAATTCGTTCAAGGCTCTCATTGCTGCAGAATACAATGGAGTCGAAGTGAAATTGGTCCCAGACTTTGAGATGGGAGTCTCAAACAAGACTCCGGAGTTTATCAAGATGAACCCTATTGGGAAGGTCCCGGTATTAGAAACGCCTGATGGCCCCATATTCGAGAGTAACGCTATAGCCCGTTATGTTGCACGCTTGAAGGCTGATAGTCCTCTCTATGGTTCATCTCTGATAGATTATGGGCACATTGAACAATGGATTGATTTTGCATCATTGGAGATTGATTCTAATATTGTGACTTGGTTTAGACCTAGAATTGGGAGAGCTGTTTATCTTCCTCCTGTCGAGGAAGCTGCAATTGCTGCATTGAAGAGAGCTTTGGGAGCTTTGAATACACACCTGGCTTCAAATACATATCTAGTTGGTCATTCTGTTACATTAGGTGACATAATCTTGACTTGCAACCTATTATTGGGTTTTACTAAGCTCATGACTAAGAGCTTTACCTCGGAGTTCCCACATGTTGAGCGGTACTTCTGGACCTTGGTCAATCAACTAAACTTCAAAAAAATCCTGGGTGAGGTGAAGCAGGCAGAGTCAATTCCACCTGTTCAATCTGCAACGAAACCTGATGAATCTTCTAAGCAAAAGCACAAGGATGAGGTAAAGAAAGAACCTAAAAAGGAAGCTGAAAAAGAGAAGCCAAAGGCTGTAGCTGGCGACGGAGAGGATGAGGCACCAAAGCCAAAGCCCAAAAATCCTCTTGATTTGCTACCTCCGAGTAAGATGATTCTGGATGAGTGGAAGCGGCTATACTCGAATACCAAAACCAACTTTCGGGAGGTTGCAATTAAAGGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTTTGGTTCTGTGATTACAAGTACAACGATGAGAATACTGTTTCATTCGTGACTTTGAACAAGGTTGGTGGCTTTCTCCAGCGAATGGATCTCACTCGTAAGTATGCTTTCGGGAAGATGTTAGTGATTGGATCAGAACCTCCATTTAAGGTGAAGGGTTTATGGCTTTTCCGTGGACAAGAGATCCCAAAATTCGTCCTGGACGAGTGCTACGACATGGAACTTTATGAATGGAGGAAGGTTGATATATCAGACGAGGCCCAAAAGGAACGCGTAAACCAGATGATTGAAGATCAGGAGCCTTTTGAAGGGGAGGCTTTGTTGGATGCCAAATGCTTCAAGTGA 1359 43.05 MILNFSVFFLFVSQQVLYLNLERGAFLPSAMALVLHAGKTNKNSFKALIAAEYNGVEVKLVPDFEMGVSNKTPEFIKMNPIGKVPVLETPDGPIFESNAIARYVARLKADSPLYGSSLIDYGHIEQWIDFASLEIDSNIVTWFRPRIGRAVYLPPVEEAAIAALKRALGALNTHLASNTYLVGHSVTLGDIILTCNLLLGFTKLMTKSFTSEFPHVERYFWTLVNQLNFKKILGEVKQAESIPPVQSATKPDESSKQKHKDEVKKEPKKEAEKEKPKAVAGDGEDEAPKPKPKNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLTRKYAFGKMLVIGSEPPFKVKGLWLFRGQEIPKFVLDECYDMELYEWRKVDISDEAQKERVNQMIEDQEPFEGEALLDAKCFK 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 620467 623696 + Lsi11G000530.1 Lsi11g00053 673220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00053 452 MobiDBLite consensus disorder prediction 252 292 - -
Lsi11g00053 452 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 292 452 IPR001662 GO:0003746|GO:0006414
Lsi11g00053 452 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 31 112 IPR004045 -
Lsi11g00053 452 SFLD Main (cytGST) 34 220 - -
Lsi11g00053 452 SUPERFAMILY eEF1-gamma domain 292 452 IPR036433 GO:0003746|GO:0006414
Lsi11g00053 452 PANTHER - 31 452 - -
Lsi11g00053 452 CDD GST_N_EF1Bgamma 33 107 - -
Lsi11g00053 452 Pfam Glutathione S-transferase, N-terminal domain 40 106 IPR004045 -
Lsi11g00053 452 SUPERFAMILY Thioredoxin-like 30 115 IPR036249 -
Lsi11g00053 452 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 292 452 IPR036433 GO:0003746|GO:0006414
Lsi11g00053 452 SFLD Glutathione Transferase (cytosolic) 34 220 IPR040079 -
Lsi11g00053 452 Pfam Glutathione S-transferase, C-terminal domain 158 225 IPR004046 -
Lsi11g00053 452 Pfam Elongation factor 1 gamma, conserved domain 291 399 IPR001662 GO:0003746|GO:0006414
Lsi11g00053 452 MobiDBLite consensus disorder prediction 242 299 - -
Lsi11g00053 452 SMART EF1G_2 291 399 IPR001662 GO:0003746|GO:0006414
Lsi11g00053 452 CDD GST_C_EF1Bgamma_like 120 240 - -
Lsi11g00053 452 Gene3D - 110 246 - -
Lsi11g00053 452 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 31 452 IPR044628 GO:0004364
Lsi11g00053 452 Gene3D Glutaredoxin 30 104 - -
Lsi11g00053 452 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 117 245 IPR010987 -
Lsi11g00053 452 SUPERFAMILY GST C-terminal domain-like 103 244 IPR036282 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00730 Lsi-Chr5:9954594 Lsi11g00053 Lsi-Chr11:620467 0 dispersed
Lsi08g01285 Lsi-Chr8:21216527 Lsi11g00053 Lsi-Chr11:620467 3.49E-11 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00053 K03233 - zju:107412556 716.072