Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00064 ATGGAGGGAGGACAAGAGGATGCCGGAAATGGGTTTACGGCGGCCGCTGGTTCAAATCATCCGAGACCCGAGACGGCAGCTCCACCACCCGAAGGTGGTGGTCCGGTGGGTTCTGCAGCGGCGGCAGGAAAGAAGAAGAGGGGGAGACCGAGGAAGTATGGGCCGGACGGGAAGTTGAATGTCGCGGCACTGTCGCCGAAGCCGATATCGGCATCGGCACCGGCACCGGCGGCAGTTATTGATTTCTCGGCGGAGAAACGTGGAAAAGTGCGACCGGCGAGTTCCTTGACCAAAACCAAATATGAAGCGGAGAATTTAGGTGAATGGGTGCCTTGTTCTGTTGGTGCTAATTTCACACCCCATATCATATCAGTAAGCACCGGCGAGGACGTTACGATGAAGGTTCTCTCATTTTCTCAACAAGGGCCTCGAGCAATTTGCATTCTGTCTGCTAACGGCGTGATTTCGAGTGTCACGCTTCGTCAACCTGACTCCTCTGGAGGAACATTAACATATGAGGGTCGTTTTGAGATATTGTCATTGTCGGGATCGTTCATGCCGAGCGACAGCGCAGGAACAAAGAGCAGAATTGGTGGTATGAGTGTCTCGTTAGCAAGTCCAGACGGACGAGTTGTTGGTGGTGGAGTTGCTGGTTTGTTAGTAGCTGCAAGTCCAGTTCAAGTGGTTGTAGGAAGCTTTTTATCTGGGAACCAACATGAGCAAAAGTCGAAGAAATCAAAACACGACGTGGTATTACCGGTTTCTGCTTTTCCAATCTCTAGCGTTGAACCGAAATCATACAAAACGACAACGACATCTTCGTTTCGTGCTGAAACATGGTCACCTTTAGTTCCAGATTTAAGAAGTCAGCCAACTGATATCAATGTATCATTAACCAGTGGTTAA 906 50.0 MEGGQEDAGNGFTAAAGSNHPRPETAAPPPEGGGPVGSAAAAGKKKRGRPRKYGPDGKLNVAALSPKPISASAPAPAAVIDFSAEKRGKVRPASSLTKTKYEAENLGEWVPCSVGANFTPHIISVSTGEDVTMKVLSFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSDSAGTKSRIGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKSKKSKHDVVLPVSAFPISSVEPKSYKTTTTSSFRAETWSPLVPDLRSQPTDINVSLTSG 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 740003 743058 + Lsi11G000640.1 Lsi11g00064 673231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00064 301 Gene3D - 120 251 - -
Lsi11g00064 301 SUPERFAMILY AF0104/ALDC/Ptd012-like 117 243 - -
Lsi11g00064 301 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 37 298 - -
Lsi11g00064 301 ProSiteProfiles PPC domain profile profile. 115 260 IPR005175 -
Lsi11g00064 301 MobiDBLite consensus disorder prediction 1 60 - -
Lsi11g00064 301 CDD DUF296 119 210 IPR005175 -
Lsi11g00064 301 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 37 298 IPR039605 GO:0003680
Lsi11g00064 301 Pfam Plants and Prokaryotes Conserved (PCC) domain 120 233 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00539 Lsi-Chr9:5661639 Lsi11g00064 Lsi-Chr11:740003 1.32E-71 dispersed
Lsi09g01558 Lsi-Chr9:23699625 Lsi11g00064 Lsi-Chr11:740003 1.21E-53 dispersed
Lsi11g00064 Lsi-Chr11:740003 Lsi09g00368 Lsi-Chr9:3836578 2.53E-130 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00064 - - csv:101205374 455.677