Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00071 ATGCGGAAGTTGAGTTGTATGTTGTTTGTGCTCATCTGTTCCTTCCTTCTCTGTGATTTGATTTCAGTAGGGGTGGATGCTTCAAGATTATTGTCCCCATTTCAATTGGAAGGCAAGGCTATAGTAGAAAGTGGTTGGTGGCTGAGTGGCCAAAACGTCTCACACCATTGTGAATGGGAAGGTATTGTTTGTGATATTACTTCATCAACCATTATAGGGATTTATGTAAATTGGACATTACCAATTGGATCTACTTTACTAAATTGGAACATCTCGTCTTTACCTAACTTGGCCAGTCTTCGTGTCATCAATTCTAGTCTTCAAGGGAGAATCCCTCCGGAAATAGGCCGTCTCTCCAGCCTCACTTTTCTACAATTATCTCGCAATAATCTAACTGGCCAGATTCCTTTAGAAATAGGAAATTTGAGTAACTTGTTCCAACTTCAGTTGGATGAAAATATGATCATAGAAACTCCCCAAAACATAGCCTTTCTCAAGAGTTTTCAAAATGAGATTGAGGTGCTAAGACAGATCAAGCACAAGAACATCGTCAAACTCCATGGTTATTGCATCCATAAACGCTGCATGTTTCTCATTTACGAATACATGGACAGAGGAAGTCTATTTTGGGTGCTAAGCAATGATTCAGAAGCAATGGAATTGAATTGGAATAAGAGACTGAATGCCATTCACAGAGTTGCATTTGCTTTGTGTTATTTACATCATGATTGCATTACACCCATCATTCATCGAGATGTCACAACCACTAATATACTTTTGGACTCAAAGTTAGAGGCTTTTCTCTCTGATTTTGGTATTGCAAGATTTCTTGAGGTTGAATCTTCCTATCACACCACCATTGGAGGCACATATGGCTACATTGCTCCAGAATTGGCATATACTATGGTGGTTACAGAAAAATGTGATGTGTACAGCTTTGGAGTGGTGGCATTGGAAACAATAATGGGTAAACACCCTGGAGAACTATTAAATGAGTTATGGTCTAAATCTACTCCACATGTAGCCATCAAGGATTTGTTAGACTCACGTCTCAGATCTCCTTTAACTCAAATTGGAGTTGCACAAACTATAGTTCTTACATTAACCTTGGCTTTTGCATGCCTTCACCCGAATCCAAAAGCTCGACCTACAATGCAACATGTCGCCAATGAATTTCTTGTTCGAAGACCTCATCTAGAATTCTCATTCAATGACATTTCGGTTAAACAAGTTTTAGGACAGGAAATATACCATGTATATGAGATTTCAGAATAA 1275 38.75 MRKLSCMLFVLICSFLLCDLISVGVDASRLLSPFQLEGKAIVESGWWLSGQNVSHHCEWEGIVCDITSSTIIGIYVNWTLPIGSTLLNWNISSLPNLASLRVINSSLQGRIPPEIGRLSSLTFLQLSRNNLTGQIPLEIGNLSNLFQLQLDENMIIETPQNIAFLKSFQNEIEVLRQIKHKNIVKLHGYCIHKRCMFLIYEYMDRGSLFWVLSNDSEAMELNWNKRLNAIHRVAFALCYLHHDCITPIIHRDVTTTNILLDSKLEAFLSDFGIARFLEVESSYHTTIGGTYGYIAPELAYTMVVTEKCDVYSFGVVALETIMGKHPGELLNELWSKSTPHVAIKDLLDSRLRSPLTQIGVAQTIVLTLTLAFACLHPNPKARPTMQHVANEFLVRRPHLEFSFNDISVKQVLGQEIYHVYEISE 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 791353 793749 + Lsi11G000710.1 Lsi11g00071 673238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00071 424 SUPERFAMILY Protein kinase-like (PK-like) 163 392 IPR011009 -
Lsi11g00071 424 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 161 418 - -
Lsi11g00071 424 Gene3D Transferase(Phosphotransferase) domain 1 204 402 - -
Lsi11g00071 424 SUPERFAMILY L domain-like 55 169 - -
Lsi11g00071 424 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 161 418 - -
Lsi11g00071 424 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 34 155 - -
Lsi11g00071 424 ProSiteProfiles Protein kinase domain profile. 131 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00071 424 Pfam Protein kinase domain 166 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00071 424 ProSitePatterns Tyrosine protein kinases specific active-site signature. 248 260 IPR008266 GO:0004672|GO:0006468
Lsi11g00071 424 Gene3D Ribonuclease Inhibitor 35 203 IPR032675 -
Lsi11g00071 424 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 34 155 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01336 Lsi-Chr5:21143284 Lsi11g00071 Lsi-Chr11:791353 5.77E-12 dispersed
Lsi11g00071 Lsi-Chr11:791353 Lsi03g00765 Lsi-Chr3:10745711 1.79E-06 dispersed
Lsi11g00070 Lsi-Chr11:781604 Lsi11g00071 Lsi-Chr11:791353 7.82E-128 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84005 PF00069 Pkinase 3.80E-37 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00071 - - mcha:111023614 416.772