Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00079 ATGGAGCATGGAGATCGAATTGAAGAAGGTAGCTCCAGATTGCTGCGGGGTAATAGCGTTGCTGGCAGTAGTAATGATTACAGGTGGGTTGATGGCAGTGAAGTGGACTCCGAGTCGCCTCCATGGTCGCTGTTTGAAGAAAGAGAGAGCGGGGAAGGATATGGATCTATCAGAAGGAGGTTGGTTAAGAAGCCCAAGAGAGTTGATTCTTTTGATGTTGAAGCAATGGAGATTGCCGGTGCCAACTATCACCATTTAAAGGATGTTTCCCTTTGGCAAACTATTGCTATAGCATTTCAAACACTTGGTGTTGTATATGGTGACATGGGTACAAGTCCACTATACGTCTTTGCTGATGTATTCAGCAAGGTGCATATTGAGGCAGATGTTGATGTCCTGGGGGCTCTTTCCTTAGTGATTTATACAATTGCCCTTATTCCTTTGGCAAAATATGTTTTCGTAGTGCTAAGAGCCAACGACAATGGTGAAGGAGGAACATTTGCATTGTATTCGCTTATCTGTAGGTATGCCAAAGTTAACATGCTGCCAAACCGTCAGCCAGCTGATGAACATATCTCAAGTTTTAAGCTTAAACTACCCACTCCAGAGTTGGAAAGGGCCTTGCATATCAAAGAGACTCTGGAGAAGAGATCATCCTTGAAAACTGTTATCTTGCTGTTGGTTCTGATGGGCACTTCAATGATTATTGGGGATGGTATTCTAACCCCAGCAATATCAGATGCTGTGGTTATTGTTTCAATTATAATCCTTGTGGCCTTGTTCAGCATACAGAAATTTGGAACTGGAAAAGTAGGATTTATGTTTGCTCCTGTGCTTGCTTTGTGGTTTTTTAGTCTGGGATCTATTGGAATTTACAATGTAGTGAAGTATGATCTCACCGTTGTAAGGGCTCTCAATCCCGCTTACATCTATTTATTCTTCAAGAAAAATTCAACTAATGCATGGTCAGCTCTCGGTGGTTGTGTTTTGTGCGTAACAGGAGCTGAAGCCATGTTCGCTGATCTTGGCCATTTCACTGTGCCAGCCATACAGATTGCCTTCACATGTGTTGTTTTCCCCTGCCTTCTCTTGGCATACATGGGCCAGGCTGCATACCTTTTGAAACATCCAGATTCTGCAGCAAGAATATTTTATGATTCTGTGCCAGCAACACTTGCTGCTATGATTGCGAGCCAAGCAATGATATCTGCAACCTTTTCCTGTGTCAAGCAATCTATGGCTCTTGGATGCTTTCCAAGAATGAAGATAGTTCACACCTCTAAGAGACGAATGGGTCAAATTTACATCCCTGTGATCAATTGGTTTTTGATGATAATGTGTATATGTGTCGTTGCAATATTTCGAAGGACTACAGACATCGCAAATGCTTATGGTATTGCTGAAGTTGGTGTGATGCTGGTGAGCACTGTCCTGGTGACTTTAGTAATGCTTCTAATCTGGCAGACAAATTTGTTTCTTGCGTTGTGTTTCCCACTTGTATTTGGGTCAGTGGAAGTTATCTACTTATCTGCAGTTTTATCAAAAATTACAGAGGGTGGGTGGTTGCCACTTGCTTTTGCTTCCGTCTTCCTCTCTGTGATGTACACATGGAATTATGGGAGTGTATTGAAGTATCGAAGTGAGGTGAGAGACAAGATATCAACGGATTTCTTGCTTGAACTGGGATCTACTCTCGGAACTGTAAGAGTTCCAGGAATCGGTCTCCTCTACAATGAACTTGTCCAAGGCATTCCTGCAATTTTTGGGCAATTTCTTCTTAGCCTTCCAGCCATCCACTCCACAATCGTGTTTGTGTGCATTAAATATGTCCCAATCCCCGTGGTTCCACAAGAGGAAAGGTTTTTGTTTAGGAGGGTTGGCCCAAAAGATTACCATATATTCCGTTGCATCGCGAGATATGGTTACAAGGATGTGCGGAAGGAAGATCACCATGCGTTTGAGCAACTTTTGATGGAAAGCCTGGAGAAGTTCTTAAGAAAGGAGTCTCAAGATCTTGCCCTGGAGAGCAATTTGAATGAGTTGGAATTCGATAATATTTCAGAGAGGTCGCCGTCGCGGGATTCTCCATCTCTAGGCGTTGCCGATGTGAATGAGGAGCTGAGAATTCCATTGATAGAACAGGCAACAACCGTGGGTTCAGAAGAAGCTTTTGGGGCGCAATTGCCGTCCAGCATTATGGCATCAGATGACGACCCTAGTTTGGAGTATGAGCTATCAGCCCTTCGTGAAGCAATGGATTCAGGATTTACGTATCTACTGGCACAAGGGGACGTTCGAGCAAAGAAAAACTCATTTTTTATTAAGAAGCTTGTTATAAACTATTTCTATGCATTCCTAAGGAGGAACTGTAGGGGTGGTGCAGCAACAATGCGAGTTCCTCACATGAACATTATGCAAGTTGGGATGACTTATATGGTTTGA 2442 43.12 MEHGDRIEEGSSRLLRGNSVAGSSNDYRWVDGSEVDSESPPWSLFEERESGEGYGSIRRRLVKKPKRVDSFDVEAMEIAGANYHHLKDVSLWQTIAIAFQTLGVVYGDMGTSPLYVFADVFSKVHIEADVDVLGALSLVIYTIALIPLAKYVFVVLRANDNGEGGTFALYSLICRYAKVNMLPNRQPADEHISSFKLKLPTPELERALHIKETLEKRSSLKTVILLLVLMGTSMIIGDGILTPAISDAVVIVSIIILVALFSIQKFGTGKVGFMFAPVLALWFFSLGSIGIYNVVKYDLTVVRALNPAYIYLFFKKNSTNAWSALGGCVLCVTGAEAMFADLGHFTVPAIQIAFTCVVFPCLLLAYMGQAAYLLKHPDSAARIFYDSVPATLAAMIASQAMISATFSCVKQSMALGCFPRMKIVHTSKRRMGQIYIPVINWFLMIMCICVVAIFRRTTDIANAYGIAEVGVMLVSTVLVTLVMLLIWQTNLFLALCFPLVFGSVEVIYLSAVLSKITEGGWLPLAFASVFLSVMYTWNYGSVLKYRSEVRDKISTDFLLELGSTLGTVRVPGIGLLYNELVQGIPAIFGQFLLSLPAIHSTIVFVCIKYVPIPVVPQEERFLFRRVGPKDYHIFRCIARYGYKDVRKEDHHAFEQLLMESLEKFLRKESQDLALESNLNELEFDNISERSPSRDSPSLGVADVNEELRIPLIEQATTVGSEEAFGAQLPSSIMASDDDPSLEYELSALREAMDSGFTYLLAQGDVRAKKNSFFIKKLVINYFYAFLRRNCRGGAATMRVPHMNIMQVGMTYMV 813
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 846089 852485 - Lsi11G000790.1 Lsi11g00079 673246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00079 813 Pfam K+ potassium transporter 98 644 IPR003855 GO:0015079|GO:0016020|GO:0071805
Lsi11g00079 813 MobiDBLite consensus disorder prediction 1 46 - -
Lsi11g00079 813 PANTHER POTASSIUM TRANSPORTER 12-RELATED 11 813 - -
Lsi11g00079 813 TIGRFAM kup: potassium uptake protein 97 813 IPR003855 GO:0015079|GO:0016020|GO:0071805
Lsi11g00079 813 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 11 813 IPR003855 GO:0015079|GO:0016020|GO:0071805
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02374 Lsi-Chr2:30419480 Lsi11g00079 Lsi-Chr11:846089 0 dispersed
Lsi03g00945 Lsi-Chr3:18039437 Lsi11g00079 Lsi-Chr11:846089 0 dispersed
Lsi03g01412 Lsi-Chr3:25070978 Lsi11g00079 Lsi-Chr11:846089 0 dispersed
Lsi07g00402 Lsi-Chr7:4328196 Lsi11g00079 Lsi-Chr11:846089 0 dispersed
Lsi11g00079 Lsi-Chr11:846089 Lsi02g01554 Lsi-Chr2:21392597 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00079 K03549 - csv:101202804 1455.27