Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g00096 | ATGGATCTACCTCAAATCTTCCCTCAGGAGGACCTCATTCAGAGTGCTAGAAAATTGCCTTCCTTTCCCAGTAGGCACATTCACTTGGTTGCATTCCCATCTTTGCAATCCCTTCCTTCTTTCTATGTCCTGGAAGCTGAAAATCGTATAAAAGGGTTAGGGCCCTCTTCCGATGCATTGTATAGGGAATTATGGCATGCCTGTGCAGGACCACTTGTCACCCTTCCTCGCCAAGATGAACGAGTATACTACTTTCCTCAGGGTCACATGGAACAGGCGGAACCCGACACCGATGAAGTTTATGCTCAGATAACTCTATTACCAGAAAGCAATCAAAGTGAAGTAACAAGCCCAGATCCTGCCCTTCCTGAGCCTACAAGATGTAATGTCCACTCATTTTGCAAGACGCTCACTGCTTCTGACACTAGCACTCATGGTGGCTTTTCTGTTCTTAGGAGGCATGCGGATGACTGTCTGCCACCTCTGGATATGTCTCAGCAGCCACCATGGCAAGAATTGGTCGCGACTGATTTACATGGGAATCAATGGCATTTTAGGCACATTTTCCGAGGTCAACCAAGGCGTCATTTGCTAACAACAGGGTGGAGCGTCTTTGTTAGTTCCAAAAAGCTAGTAGCTGGAGATGCTTTTATCTTTTTAAGAGGTGAAAATGGAGAGCTTCGTGTTGGGGTGAGAAGACTCATGAGACAGCTAAATAATATGCCATCTTCTGTTATATCAAGTCACAGTATGCATCTTGGAGTTTTAGCCACTGCTTCTCATGCTATTGCAACTGGAACACTCTTTTCTGTCTTTTACAAGCCAAGAACGAGCAGGTTTACATTTCTTGTAAGTCTGAACAAGTACCTTGAAGCTCAAAACCATAAACTCTCTGTTGGGATGAGGTTCAAGATGAGGTTTGAGGGCGAGGAAGTACCTGAAAGAAGTTTTAGCGGAACAATTGTTGGTCTTGGAGATAATGCGTCGCCTGGATGGGCGAATTCTGAGTGGCGATCTTTAAAGAAAGACGTTCCTTTTGGGAAACGTGCAAATAGCAAACCAAACAATATGGTGGCTTGCATATTGAATGTGCAATGGGATGAACCTTCATCTATCTTGCGTCCAGATAAGGTGTCTGCTTGGGAATTGGAGCCACTTGTTGCTTCTAACCCTCTAAGCACTCAGCCTACACAGAGGAACAAGCGTCCACGGCCTACTGTCTTGCCTTCATCTCCGCCAGATGCAACTGTACTTGGTGGGTGGAAACCTACGGTTGAATCTTCTGCTTTCTCATATACTGAGCCACAGCGCGGAAGGGACCTATATTCATCACCAAAGTTCAGTACTGCAGCTTCAAATTCACTTGGTTTTAATGCGAATGGTTCTCTTGGTGCTGTGTCCAGCAACGCCTACTGGTCTAATACCAATAGGGTGGAAAATATTATGGACACTTCATCTCATGGAGCAAACAGGGAACCTGTTGAAAAGAAACAGAACACTAGAAACGGATGCAGGCTCTTTGGGATCCAGCTTCTTGGAAATTCTAATGTAGACGAAGCTTCTCCCGTTTCAACACCTAAAATGGTTGGTGAGGATAGGCTGGTTCCACCTGTAGACTCAGAATTTGACCAGCATTCTGAACCATCAAACATTCTCCGATCTGATATTCCTTCAGTAAGCTGTGATGCTGATAAATCGTGCTTGATTTCCCCATTAGAGTCTCAAAGCAGACAAATCCGCAGCTGCACAAAGGTTCACATGCAAGGAATTGCTGTTGGGAGGGCTGTAGATTTAACCCGGTTCAATCAATATGATGATCTACTTAGGAAACTGGAGGAGATGTTTGACATAGAGGGCGAGCTTTGTGGCTCTTTAAAGAAATGGCAGGTTGTTTACACCGATGATGAAGATGATATGATGATGGTTGGAGATGATCCTTGGAACGAGTTCTGCAGCATGGTAAGGAAGATATTCATTTACACAACAGAAGAAGTGAAGAGACTTTCACCCAAGATAAAACTTCCACTGGGTGGAGAGGCAAAGCTTAGCAAGCCAGATTCCGATACGATTGCCAACCACATGGAGGATCAATCGTCCATCGTGGGATCAGATTGCTGA | 2118 | 44.9 | MDLPQIFPQEDLIQSARKLPSFPSRHIHLVAFPSLQSLPSFYVLEAENRIKGLGPSSDALYRELWHACAGPLVTLPRQDERVYYFPQGHMEQAEPDTDEVYAQITLLPESNQSEVTSPDPALPEPTRCNVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNQWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQLNNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRFTFLVSLNKYLEAQNHKLSVGMRFKMRFEGEEVPERSFSGTIVGLGDNASPGWANSEWRSLKKDVPFGKRANSKPNNMVACILNVQWDEPSSILRPDKVSAWELEPLVASNPLSTQPTQRNKRPRPTVLPSSPPDATVLGGWKPTVESSAFSYTEPQRGRDLYSSPKFSTAASNSLGFNANGSLGAVSSNAYWSNTNRVENIMDTSSHGANREPVEKKQNTRNGCRLFGIQLLGNSNVDEASPVSTPKMVGEDRLVPPVDSEFDQHSEPSNILRSDIPSVSCDADKSCLISPLESQSRQIRSCTKVHMQGIAVGRAVDLTRFNQYDDLLRKLEEMFDIEGELCGSLKKWQVVYTDDEDDMMMVGDDPWNEFCSMVRKIFIYTTEEVKRLSPKIKLPLGGEAKLSKPDSDTIANHMEDQSSIVGSDC | 705 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 993183 | 1004542 | - | Lsi11G000960.1 | Lsi11g00096 | 673263 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g00096 | 705 | ProSiteProfiles | PB1 domain profile. | 580 | 673 | IPR000270 | GO:0005515 | |
Lsi11g00096 | 705 | Pfam | Auxin response factor | 259 | 341 | IPR010525 | GO:0003677|GO:0005634|GO:0006355|GO:0009725 | |
Lsi11g00096 | 705 | CDD | B3_DNA | 131 | 233 | IPR003340 | GO:0003677 | |
Lsi11g00096 | 705 | Pfam | AUX/IAA family | 581 | 616 | IPR033389 | - | |
Lsi11g00096 | 705 | Pfam | AUX/IAA family | 627 | 670 | IPR033389 | - | |
Lsi11g00096 | 705 | SUPERFAMILY | CAD & PB1 domains | 582 | 657 | - | - | |
Lsi11g00096 | 705 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 48 | 95 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Lsi11g00096 | 705 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 93 | 681 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Lsi11g00096 | 705 | SUPERFAMILY | DNA-binding pseudobarrel domain | 122 | 262 | IPR015300 | - | |
Lsi11g00096 | 705 | MobiDBLite | consensus disorder prediction | 389 | 420 | - | - | |
Lsi11g00096 | 705 | MobiDBLite | consensus disorder prediction | 389 | 405 | - | - | |
Lsi11g00096 | 705 | ProSiteProfiles | B3 DNA-binding domain profile. | 133 | 235 | IPR003340 | GO:0003677 | |
Lsi11g00096 | 705 | Pfam | B3 DNA binding domain | 133 | 233 | IPR003340 | GO:0003677 | |
Lsi11g00096 | 705 | MobiDBLite | consensus disorder prediction | 680 | 705 | - | - | |
Lsi11g00096 | 705 | Gene3D | - | 575 | 669 | - | - | |
Lsi11g00096 | 705 | PANTHER | AUXIN RESPONSE FACTOR 9 | 48 | 95 | - | - | |
Lsi11g00096 | 705 | PANTHER | AUXIN RESPONSE FACTOR 9 | 93 | 681 | - | - | |
Lsi11g00096 | 705 | Gene3D | - | 296 | 390 | - | - | |
Lsi11g00096 | 705 | SMART | B3_2 | 133 | 235 | IPR003340 | GO:0003677 | |
Lsi11g00096 | 705 | Gene3D | - | 130 | 235 | IPR015300 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi09g00162 | Lsi-Chr9:1700937 | Lsi11g00096 | Lsi-Chr11:993183 | 0 | dispersed | |
Lsi10g01284 | Lsi-Chr10:17084884 | Lsi11g00096 | Lsi-Chr11:993183 | 6.48E-27 | dispersed | |
Lsi11g00096 | Lsi-Chr11:993183 | Lsi02g00922 | Lsi-Chr2:8889744 | 4.14E-14 | dispersed | |
Lsi11g00096 | Lsi-Chr11:993183 | Lsi01g00116 | Lsi-Chr1:1225345 | 4.03E-15 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26127 | PF02362 | B3 | 8.20E-20 | CL0405 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g00096 | K14486 | - | csv:101204612 | 1207.59 |