Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00096 ATGGATCTACCTCAAATCTTCCCTCAGGAGGACCTCATTCAGAGTGCTAGAAAATTGCCTTCCTTTCCCAGTAGGCACATTCACTTGGTTGCATTCCCATCTTTGCAATCCCTTCCTTCTTTCTATGTCCTGGAAGCTGAAAATCGTATAAAAGGGTTAGGGCCCTCTTCCGATGCATTGTATAGGGAATTATGGCATGCCTGTGCAGGACCACTTGTCACCCTTCCTCGCCAAGATGAACGAGTATACTACTTTCCTCAGGGTCACATGGAACAGGCGGAACCCGACACCGATGAAGTTTATGCTCAGATAACTCTATTACCAGAAAGCAATCAAAGTGAAGTAACAAGCCCAGATCCTGCCCTTCCTGAGCCTACAAGATGTAATGTCCACTCATTTTGCAAGACGCTCACTGCTTCTGACACTAGCACTCATGGTGGCTTTTCTGTTCTTAGGAGGCATGCGGATGACTGTCTGCCACCTCTGGATATGTCTCAGCAGCCACCATGGCAAGAATTGGTCGCGACTGATTTACATGGGAATCAATGGCATTTTAGGCACATTTTCCGAGGTCAACCAAGGCGTCATTTGCTAACAACAGGGTGGAGCGTCTTTGTTAGTTCCAAAAAGCTAGTAGCTGGAGATGCTTTTATCTTTTTAAGAGGTGAAAATGGAGAGCTTCGTGTTGGGGTGAGAAGACTCATGAGACAGCTAAATAATATGCCATCTTCTGTTATATCAAGTCACAGTATGCATCTTGGAGTTTTAGCCACTGCTTCTCATGCTATTGCAACTGGAACACTCTTTTCTGTCTTTTACAAGCCAAGAACGAGCAGGTTTACATTTCTTGTAAGTCTGAACAAGTACCTTGAAGCTCAAAACCATAAACTCTCTGTTGGGATGAGGTTCAAGATGAGGTTTGAGGGCGAGGAAGTACCTGAAAGAAGTTTTAGCGGAACAATTGTTGGTCTTGGAGATAATGCGTCGCCTGGATGGGCGAATTCTGAGTGGCGATCTTTAAAGAAAGACGTTCCTTTTGGGAAACGTGCAAATAGCAAACCAAACAATATGGTGGCTTGCATATTGAATGTGCAATGGGATGAACCTTCATCTATCTTGCGTCCAGATAAGGTGTCTGCTTGGGAATTGGAGCCACTTGTTGCTTCTAACCCTCTAAGCACTCAGCCTACACAGAGGAACAAGCGTCCACGGCCTACTGTCTTGCCTTCATCTCCGCCAGATGCAACTGTACTTGGTGGGTGGAAACCTACGGTTGAATCTTCTGCTTTCTCATATACTGAGCCACAGCGCGGAAGGGACCTATATTCATCACCAAAGTTCAGTACTGCAGCTTCAAATTCACTTGGTTTTAATGCGAATGGTTCTCTTGGTGCTGTGTCCAGCAACGCCTACTGGTCTAATACCAATAGGGTGGAAAATATTATGGACACTTCATCTCATGGAGCAAACAGGGAACCTGTTGAAAAGAAACAGAACACTAGAAACGGATGCAGGCTCTTTGGGATCCAGCTTCTTGGAAATTCTAATGTAGACGAAGCTTCTCCCGTTTCAACACCTAAAATGGTTGGTGAGGATAGGCTGGTTCCACCTGTAGACTCAGAATTTGACCAGCATTCTGAACCATCAAACATTCTCCGATCTGATATTCCTTCAGTAAGCTGTGATGCTGATAAATCGTGCTTGATTTCCCCATTAGAGTCTCAAAGCAGACAAATCCGCAGCTGCACAAAGGTTCACATGCAAGGAATTGCTGTTGGGAGGGCTGTAGATTTAACCCGGTTCAATCAATATGATGATCTACTTAGGAAACTGGAGGAGATGTTTGACATAGAGGGCGAGCTTTGTGGCTCTTTAAAGAAATGGCAGGTTGTTTACACCGATGATGAAGATGATATGATGATGGTTGGAGATGATCCTTGGAACGAGTTCTGCAGCATGGTAAGGAAGATATTCATTTACACAACAGAAGAAGTGAAGAGACTTTCACCCAAGATAAAACTTCCACTGGGTGGAGAGGCAAAGCTTAGCAAGCCAGATTCCGATACGATTGCCAACCACATGGAGGATCAATCGTCCATCGTGGGATCAGATTGCTGA 2118 44.9 MDLPQIFPQEDLIQSARKLPSFPSRHIHLVAFPSLQSLPSFYVLEAENRIKGLGPSSDALYRELWHACAGPLVTLPRQDERVYYFPQGHMEQAEPDTDEVYAQITLLPESNQSEVTSPDPALPEPTRCNVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNQWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQLNNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRFTFLVSLNKYLEAQNHKLSVGMRFKMRFEGEEVPERSFSGTIVGLGDNASPGWANSEWRSLKKDVPFGKRANSKPNNMVACILNVQWDEPSSILRPDKVSAWELEPLVASNPLSTQPTQRNKRPRPTVLPSSPPDATVLGGWKPTVESSAFSYTEPQRGRDLYSSPKFSTAASNSLGFNANGSLGAVSSNAYWSNTNRVENIMDTSSHGANREPVEKKQNTRNGCRLFGIQLLGNSNVDEASPVSTPKMVGEDRLVPPVDSEFDQHSEPSNILRSDIPSVSCDADKSCLISPLESQSRQIRSCTKVHMQGIAVGRAVDLTRFNQYDDLLRKLEEMFDIEGELCGSLKKWQVVYTDDEDDMMMVGDDPWNEFCSMVRKIFIYTTEEVKRLSPKIKLPLGGEAKLSKPDSDTIANHMEDQSSIVGSDC 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 993183 1004542 - Lsi11G000960.1 Lsi11g00096 673263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00096 705 ProSiteProfiles PB1 domain profile. 580 673 IPR000270 GO:0005515
Lsi11g00096 705 Pfam Auxin response factor 259 341 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lsi11g00096 705 CDD B3_DNA 131 233 IPR003340 GO:0003677
Lsi11g00096 705 Pfam AUX/IAA family 581 616 IPR033389 -
Lsi11g00096 705 Pfam AUX/IAA family 627 670 IPR033389 -
Lsi11g00096 705 SUPERFAMILY CAD & PB1 domains 582 657 - -
Lsi11g00096 705 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 48 95 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lsi11g00096 705 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 93 681 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lsi11g00096 705 SUPERFAMILY DNA-binding pseudobarrel domain 122 262 IPR015300 -
Lsi11g00096 705 MobiDBLite consensus disorder prediction 389 420 - -
Lsi11g00096 705 MobiDBLite consensus disorder prediction 389 405 - -
Lsi11g00096 705 ProSiteProfiles B3 DNA-binding domain profile. 133 235 IPR003340 GO:0003677
Lsi11g00096 705 Pfam B3 DNA binding domain 133 233 IPR003340 GO:0003677
Lsi11g00096 705 MobiDBLite consensus disorder prediction 680 705 - -
Lsi11g00096 705 Gene3D - 575 669 - -
Lsi11g00096 705 PANTHER AUXIN RESPONSE FACTOR 9 48 95 - -
Lsi11g00096 705 PANTHER AUXIN RESPONSE FACTOR 9 93 681 - -
Lsi11g00096 705 Gene3D - 296 390 - -
Lsi11g00096 705 SMART B3_2 133 235 IPR003340 GO:0003677
Lsi11g00096 705 Gene3D - 130 235 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00162 Lsi-Chr9:1700937 Lsi11g00096 Lsi-Chr11:993183 0 dispersed
Lsi10g01284 Lsi-Chr10:17084884 Lsi11g00096 Lsi-Chr11:993183 6.48E-27 dispersed
Lsi11g00096 Lsi-Chr11:993183 Lsi02g00922 Lsi-Chr2:8889744 4.14E-14 dispersed
Lsi11g00096 Lsi-Chr11:993183 Lsi01g00116 Lsi-Chr1:1225345 4.03E-15 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26127 PF02362 B3 8.20E-20 CL0405 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00096 K14486 - csv:101204612 1207.59