Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00101 ATGGAGCTGACTACTCAAGATCCTCCTATCCCTATTCCTATTCCCATCCCCTTAAATAGTCGTTACGGCGGCCACGACCATGACCATGACCATATCATCCACCACCATGACCCCTCTGCCACCCGCAACCACATCATCGCGGCTACAGTCAATGGTGGCAGTCCACTTCCAACCTCCCAAATGGAAGTTGACCTTCACCACCACCACAACAATAACAATAACAACAAGAAGCATATCAAATACAAAGAGTGTCTCAAAAACCATGCAGCTTCCATGGGAGGCAATGCCACCGACGGCTGCGGTGAGTTTATGCCGAGCGGAGAAGAAGGCTCCATTGAAGCCCTAACATGCTCCGCCTGCAACTGTCATAGAAACTTCCATCGAAAAGAGATCGAAGGAGAACCCTACGATTGGCTCCACCACTCCCGCCTCGGGCGGAAGCTTCTCGTTGGGGGGAAGAACATGATCGCCCCACCAGAGGCCACCGCATTCGCGTACCCGACCGCAACTGGGGCGGCGTTCATATCATCTAGAGCAGCAACAGCACAACCCCACCACATGATAATGTCGTACAACATGCTCGGAGGGGGCGGTGGGCACTCGGAGTCGGAGGAGCAAGAGGAGGGAATGGGAGCAGGGGTTGGGGGAAGGGTGTATTCGGGGGCGATGATGAATAAGAAGCGATTCCGAACGAAGTTTACGGCGGAGCAGAAGGAGAAGATGCTGAGGTTTGCAGAGAAAGTTGGATGGAAGATTCAGAAGCAAGAGGAGAGTGTGGTGCAGCAATTCTGTCAAGAGATTGGAGTGAAAAGGAGAGTTCTTAAGGTTTGGATGCATAACAACAAGCACAATCTTGCCAAGAAGGATACAATAAATTCCCCTTCCCATTCTCCTAATCCCTTAAATTAA 909 51.38 MELTTQDPPIPIPIPIPLNSRYGGHDHDHDHIIHHHDPSATRNHIIAATVNGGSPLPTSQMEVDLHHHHNNNNNNKKHIKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEIEGEPYDWLHHSRLGRKLLVGGKNMIAPPEATAFAYPTATGAAFISSRAATAQPHHMIMSYNMLGGGGGHSESEEQEEGMGAGVGGRVYSGAMMNKKRFRTKFTAEQKEKMLRFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKDTINSPSHSPNPLN 302
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 1088377 1089285 - Lsi11G001010.1 Lsi11g00101 673268
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00101 302 Gene3D - 215 288 - -
Lsi11g00101 302 Pfam ZF-HD protein dimerisation region 79 131 IPR006456 -
Lsi11g00101 302 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 80 131 IPR006456 -
Lsi11g00101 302 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 25 288 - -
Lsi11g00101 302 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 25 288 - -
Lsi11g00101 302 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 81 130 IPR006456 -
Lsi11g00101 302 SUPERFAMILY Homeodomain-like 219 287 IPR009057 -
Lsi11g00101 302 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 226 282 IPR006455 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00800 Lsi-Chr1:6303712 Lsi11g00101 Lsi-Chr11:1088377 2.42E-60 dispersed
Lsi03g01478 Lsi-Chr3:25706181 Lsi11g00101 Lsi-Chr11:1088377 1.27E-54 dispersed
Lsi04g00427 Lsi-Chr4:4081885 Lsi11g00101 Lsi-Chr11:1088377 5.29E-45 dispersed
Lsi08g01003 Lsi-Chr8:18507811 Lsi11g00101 Lsi-Chr11:1088377 9.81E-63 dispersed
Lsi11g00101 Lsi-Chr11:1088377 Lsi08g01390 Lsi-Chr8:22180458 2.46E-59 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26128 PF04770 ZF-HD_dimer 4.60E-29 No_clan Lsi TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00101 - - bhj:120068944 533.102