Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00101 ATGGAGCTGACTACTCAAGATCCTCCTATCCCTATTCCTATTCCCATCCCCTTAAATAGTCGTTACGGCGGCCACGACCATGACCATGACCATATCATCCACCACCATGACCCCTCTGCCACCCGCAACCACATCATCGCGGCTACAGTCAATGGTGGCAGTCCACTTCCAACCTCCCAAATGGAAGTTGACCTTCACCACCACCACAACAATAACAATAACAACAAGAAGCATATCAAATACAAAGAGTGTCTCAAAAACCATGCAGCTTCCATGGGAGGCAATGCCACCGACGGCTGCGGTGAGTTTATGCCGAGCGGAGAAGAAGGCTCCATTGAAGCCCTAACATGCTCCGCCTGCAACTGTCATAGAAACTTCCATCGAAAAGAGATCGAAGGAGAACCCTACGATTGGCTCCACCACTCCCGCCTCGGGCGGAAGCTTCTCGTTGGGGGGAAGAACATGATCGCCCCACCAGAGGCCACCGCATTCGCGTACCCGACCGCAACTGGGGCGGCGTTCATATCATCTAGAGCAGCAACAGCACAACCCCACCACATGATAATGTCGTACAACATGCTCGGAGGGGGCGGTGGGCACTCGGAGTCGGAGGAGCAAGAGGAGGGAATGGGAGCAGGGGTTGGGGGAAGGGTGTATTCGGGGGCGATGATGAATAAGAAGCGATTCCGAACGAAGTTTACGGCGGAGCAGAAGGAGAAGATGCTGAGGTTTGCAGAGAAAGTTGGATGGAAGATTCAGAAGCAAGAGGAGAGTGTGGTGCAGCAATTCTGTCAAGAGATTGGAGTGAAAAGGAGAGTTCTTAAGGTTTGGATGCATAACAACAAGCACAATCTTGCCAAGAAGGATACAATAAATTCCCCTTCCCATTCTCCTAATCCCTTAAATTAA 909 51.38 MELTTQDPPIPIPIPIPLNSRYGGHDHDHDHIIHHHDPSATRNHIIAATVNGGSPLPTSQMEVDLHHHHNNNNNNKKHIKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEIEGEPYDWLHHSRLGRKLLVGGKNMIAPPEATAFAYPTATGAAFISSRAATAQPHHMIMSYNMLGGGGGHSESEEQEEGMGAGVGGRVYSGAMMNKKRFRTKFTAEQKEKMLRFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKDTINSPSHSPNPLN 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1088377 1089285 - Lsi11G001010.1 Lsi11g00101 673268

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00101 302 Gene3D - 215 288 - -
Lsi11g00101 302 Pfam ZF-HD protein dimerisation region 79 131 IPR006456 -
Lsi11g00101 302 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 80 131 IPR006456 -
Lsi11g00101 302 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 25 288 - -
Lsi11g00101 302 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 25 288 - -
Lsi11g00101 302 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 81 130 IPR006456 -
Lsi11g00101 302 SUPERFAMILY Homeodomain-like 219 287 IPR009057 -
Lsi11g00101 302 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 226 282 IPR006455 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00101 - - - bhj:120068944 533.102
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00800 Lsi-Chr1:6303712 Lsi11g00101 Lsi-Chr11:1088377 2.42E-60 dispersed
Lsi03g01478 Lsi-Chr3:25706181 Lsi11g00101 Lsi-Chr11:1088377 1.27E-54 dispersed
Lsi04g00427 Lsi-Chr4:4081885 Lsi11g00101 Lsi-Chr11:1088377 5.29E-45 dispersed
Lsi08g01003 Lsi-Chr8:18507811 Lsi11g00101 Lsi-Chr11:1088377 9.81E-63 dispersed
Lsi11g00101 Lsi-Chr11:1088377 Lsi08g01390 Lsi-Chr8:22180458 2.46E-59 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g01003 . 4 241 ZF-HD Transcription Factor Family AT4G24660 52.3 1.8e-54 209.5
Lsi05g00825 . 53 194 ZF-HD Transcription Factor Family AT4G24660 53.9 2.3e-41 166.0
Lsi11g00101 . 79 288 ZF-HD Transcription Factor Family AT2G02540 53.0 8.6e-52 201.1
Lsi11g00101 . 76 292 ZF-HD Transcription Factor Family AT1G14440 54.5 6.4e-55 211.5
Lsi01g00671 . 129 335 ZF-HD Transcription Factor Family AT2G18350 52.9 2.3e-50 196.1
Lsi02g01484 . 13 262 ZF-HD Transcription Factor Family AT5G15210 53.8 2.9e-51 199.1
Lsi03g01478 . 22 270 ZF-HD Transcription Factor Family AT5G15210 54.8 2.0e-49 193.0
Lsi03g01478 . 22 274 ZF-HD Transcription Factor Family AT3G28920 63.6 3.0e-60 229.2
Lsi02g01484 . 6 264 ZF-HD Transcription Factor Family AT3G28920 58.5 3.9e-60 228.8
Lsi02g01484 . 31 268 ZF-HD Transcription Factor Family AT5G39760 58.3 3.2e-52 202.6
Lsi03g01478 . 30 273 ZF-HD Transcription Factor Family AT5G39760 57.4 1.6e-48 190.3
Lsi04g00427 . 1 185 ZF-HD Transcription Factor Family AT1G69600 51.7 3.5e-48 188.7
Lsi02g01484 . 64 265 ZF-HD Transcription Factor Family AT1G69600 50.5 9.4e-46 180.6
Lsi11g00101 . 79 288 ZF-HD Transcription Factor Family AT2G02540 53.0 8.6e-52 201.1
Lsi08g01003 . 4 241 ZF-HD Transcription Factor Family AT4G24660 52.3 1.8e-54 209.5
Lsi05g00825 . 53 194 ZF-HD Transcription Factor Family AT4G24660 53.9 2.3e-41 166.0
Lsi02g01484 . 31 268 ZF-HD Transcription Factor Family AT5G39760 58.3 3.2e-52 202.6
Lsi03g01478 . 30 273 ZF-HD Transcription Factor Family AT5G39760 57.4 1.6e-48 190.3
Lsi01g00671 . 129 335 ZF-HD Transcription Factor Family AT2G18350 52.9 2.3e-50 196.1
Lsi04g00427 . 1 185 ZF-HD Transcription Factor Family AT1G69600 51.7 3.5e-48 188.7
Lsi02g01484 . 64 265 ZF-HD Transcription Factor Family AT1G69600 50.5 9.4e-46 180.6
Lsi02g01484 . 13 262 ZF-HD Transcription Factor Family AT5G15210 53.8 2.9e-51 199.1
Lsi03g01478 . 22 270 ZF-HD Transcription Factor Family AT5G15210 54.8 2.0e-49 193.0
Lsi11g00101 . 76 292 ZF-HD Transcription Factor Family AT1G14440 54.5 6.4e-55 211.5
Lsi03g01478 . 22 274 ZF-HD Transcription Factor Family AT3G28920 63.6 3.0e-60 229.2
Lsi02g01484 . 6 264 ZF-HD Transcription Factor Family AT3G28920 58.5 3.9e-60 228.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010486 1 0 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26128 PF04770 ZF-HD_dimer 4.60E-29 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g00101 Lsi_Chr11 FPKM 12.488158 13.137384 18.446972 15.70262 12.548837 11.306917 14.339599 15.738359 16.171984 17.954481