Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi11g00101 | ATGGAGCTGACTACTCAAGATCCTCCTATCCCTATTCCTATTCCCATCCCCTTAAATAGTCGTTACGGCGGCCACGACCATGACCATGACCATATCATCCACCACCATGACCCCTCTGCCACCCGCAACCACATCATCGCGGCTACAGTCAATGGTGGCAGTCCACTTCCAACCTCCCAAATGGAAGTTGACCTTCACCACCACCACAACAATAACAATAACAACAAGAAGCATATCAAATACAAAGAGTGTCTCAAAAACCATGCAGCTTCCATGGGAGGCAATGCCACCGACGGCTGCGGTGAGTTTATGCCGAGCGGAGAAGAAGGCTCCATTGAAGCCCTAACATGCTCCGCCTGCAACTGTCATAGAAACTTCCATCGAAAAGAGATCGAAGGAGAACCCTACGATTGGCTCCACCACTCCCGCCTCGGGCGGAAGCTTCTCGTTGGGGGGAAGAACATGATCGCCCCACCAGAGGCCACCGCATTCGCGTACCCGACCGCAACTGGGGCGGCGTTCATATCATCTAGAGCAGCAACAGCACAACCCCACCACATGATAATGTCGTACAACATGCTCGGAGGGGGCGGTGGGCACTCGGAGTCGGAGGAGCAAGAGGAGGGAATGGGAGCAGGGGTTGGGGGAAGGGTGTATTCGGGGGCGATGATGAATAAGAAGCGATTCCGAACGAAGTTTACGGCGGAGCAGAAGGAGAAGATGCTGAGGTTTGCAGAGAAAGTTGGATGGAAGATTCAGAAGCAAGAGGAGAGTGTGGTGCAGCAATTCTGTCAAGAGATTGGAGTGAAAAGGAGAGTTCTTAAGGTTTGGATGCATAACAACAAGCACAATCTTGCCAAGAAGGATACAATAAATTCCCCTTCCCATTCTCCTAATCCCTTAAATTAA | 909 | 51.38 | MELTTQDPPIPIPIPIPLNSRYGGHDHDHDHIIHHHDPSATRNHIIAATVNGGSPLPTSQMEVDLHHHHNNNNNNKKHIKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEIEGEPYDWLHHSRLGRKLLVGGKNMIAPPEATAFAYPTATGAAFISSRAATAQPHHMIMSYNMLGGGGGHSESEEQEEGMGAGVGGRVYSGAMMNKKRFRTKFTAEQKEKMLRFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKDTINSPSHSPNPLN | 302 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 1088377 | 1089285 | - | Lsi11G001010.1 | Lsi11g00101 | 673268 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi11g00101 | 302 | Gene3D | - | 215 | 288 | - | - | |
| Lsi11g00101 | 302 | Pfam | ZF-HD protein dimerisation region | 79 | 131 | IPR006456 | - | |
| Lsi11g00101 | 302 | TIGRFAM | ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain | 80 | 131 | IPR006456 | - | |
| Lsi11g00101 | 302 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 4 | 25 | 288 | - | - | |
| Lsi11g00101 | 302 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 25 | 288 | - | - | |
| Lsi11g00101 | 302 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 81 | 130 | IPR006456 | - | |
| Lsi11g00101 | 302 | SUPERFAMILY | Homeodomain-like | 219 | 287 | IPR009057 | - | |
| Lsi11g00101 | 302 | TIGRFAM | homeo_ZF_HD: homeobox domain, ZF-HD class | 226 | 282 | IPR006455 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi01g00800 | Lsi-Chr1:6303712 | Lsi11g00101 | Lsi-Chr11:1088377 | 2.42E-60 | dispersed | |
| Lsi03g01478 | Lsi-Chr3:25706181 | Lsi11g00101 | Lsi-Chr11:1088377 | 1.27E-54 | dispersed | |
| Lsi04g00427 | Lsi-Chr4:4081885 | Lsi11g00101 | Lsi-Chr11:1088377 | 5.29E-45 | dispersed | |
| Lsi08g01003 | Lsi-Chr8:18507811 | Lsi11g00101 | Lsi-Chr11:1088377 | 9.81E-63 | dispersed | |
| Lsi11g00101 | Lsi-Chr11:1088377 | Lsi08g01390 | Lsi-Chr8:22180458 | 2.46E-59 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 26128 | PF04770 | ZF-HD_dimer | 4.60E-29 | No_clan | Lsi | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi11g00101 | - | - | bhj:120068944 | 533.102 |