Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00111 ATGAAATCATTCAATGTGGGAAACTGGAAAGCAAGTTTACCGAACACGTGGCAGAAGGAGATGTACCTTTGGGTCTCCATTTCCGAATCTATAACCAACTTCACTCCTCACATCAAACCCATAAACTCCAATAATCAACCGCCTCCGCCTCTTTTCCACTCTGCTTTTTCGCTGTTCGTCAAATTCTCATTCTCATCCAATTATTCATCTCAAATTATGACTTCGACCTTCGATTGCTGCAGCCCCCTCGCCGGAAAGCTCCAGTCCGGACCCTCATTCCTCCTCATCAATCCCTTTCATGTCCGTGAATTTCGTGTTTTTCGACGCAGGAGACTCAAGCATTACCGCCATGCCCACCATCGCACCGCCTTCACCGTCCGAAGCCAGTCGAACCCCTTCGAGAGCCTTTTCCATAACTTGGTTTCGCAAGTTACCACCGTCAATTCCTTGGAGCTAATTGCTCCAGCGCTCGGATTCTCTTCTGGCGTTGCACTTTACCTGTCGAATGTGGTCTCTGCCAAAAATTCCGCAGTGTCGGATATTGGCGAATGGATTTTGTTGTCCAGCCCCACGCCGTTTAATAGATTCGTGTTTCTTCGCTGTCCGTCTATAGCTTTCCCCGGAAGCGACACAAACCATGTGGAGGATGTGAGTGAGAAACTGGTGAAGGAGGACAGGCACTTTGTGAGGCTCAACAGCGGGAGAATGAAGGCTACTACTGGCGAAGATGAAAAGGAAGACATATTGACGTACCAAAGATTGTGTATAAGCACCGAAGATGGCGGGGTAATTTCATTGGACTGGCCGTCTAATTTGAACTTAAGGGAAGAGCAGGGTTTGGACACCACGTTATTGTTAGTGCCCGGAACCCCAGAAGGGAGCATGGATAAGAATGTGCGGTTGTCTGTGATTGAGGCTCTTGGGCGAGGCCTTTTTCCGATTGTCATGAATCCTAGAGGCTGTGCTGGTTCACCTCTTACCACTGCACGATATGTCGACTGCTGGAAGGCAACGGCTAATACCCTCTCTTTTGATCGGTTTTGTTATTGCAATAGTGCCATGATTAATATTTCGGTTGCTGCTTGGTTTTGCCACTTCAAACCAGTTTACGTGAATGTTTCTGTAGCATTAGCCAGTGATGATATCTACACAGCTGTACAGTTCATTAGTAAGGCAAGGCCGTGGACAGCATTGATGGCCATTGGCTGGGGATATGGTGCAAACATGTTGACCAAGTACCTGGCAGAAGTTGGTGAGAGAACACCACTTACCGCTGCAACATGCATTGACAATCCCTTTGACTTGGAGGAGGCCACCCAGACCCCTCCATATCACATGGCCATTGATCACGATCTCACTGGTGGACTGATTAATATTCTGAGATCTAATAAGGAACTTTTTCAAGGGAAAGCAAAAGGCTTTGATGTGGAAAAGGCTCTTGAAGCCAAATCTGTGCGCGATTTTGAAAAATTAATATCTAGTGTTTCTCATGGTTTTAATTCTATTGAAGATTTCTACTCAAAGTCAAGCACAAGAAGTGTGGTTGGGAATGTGAAAATCCCTGTACTTTACATACAGTGGCTTACAGCGGTGGAGCTTGGACTCTTGAAAGGTCGTCACCCTCTTCTCAAGGATGTTGATATTACCATCAACTCTTCCAGAGGCTTAGCTCTCGTGGAAGGCAAAACAGTGGAAGAAAGAGGAAAAGCCATCAGGCAACTTGGTTACAACTGGTCAGATGCTTCAAGTGGGTACCAATCAACTAGGTTTGTCAAGAAGAAACTTGAAGAGAGTCACAGTAGTATCCATACTGACCTAAGATCTCAAAATAACTCGCAGAGCAAATCACAACTTGAAGATAAAGGATCTCTAGAAATTGAAGTTGGGGTTTTGAACCAAACCAGCTCTATTAGTGAAGATATGGGGGAAAAGGATGAAGTCTGTTCGGAAGATACTGAAAAAGGTCAAGTGTTACGGACAGCTGAAGTGGTTATGAATATTCTTGATATGACAAACCCTGGCACTCTGACAGAGGAAGAGAAGAAAAAGGTCTTGAATGCTGTGGGTAAAGGGGAGACGTTGATGAAAGCTCTGCAAGATGCTGTACCGGAAGAAGTCCGTGGAAAGCTTACAACTGCTCTATCTGGGATATTGCATTCTCAAGGATCGAACTTAAAGGTTAATGATCTAATTGGCAGTTCTCAAAAATCTAATGCCACATTAGAATTAAAGAGAGAGACTGAGGAGAAGGTCAGACATGTGGCAGAGGCTGAAGGTTTGTCACAAATTTCTTCCCCTTTGCATAAGATGGGAGCTGTTAATGATGTTTTAGATGGTTCTGATACCTATCAACCTACAAAGGACAAGTTTATTGGGGAACTTGAATCTGAGTCTCCTTCCTCTGATAAACTCCAAAAGTCGATTGACCAAAATGGTTCTCAAGCACTTGGCAGTCATGGTGATGATACTATAAGTTCTACAAGGAAGGAGACCAGTGGCTCTGGTAAAACTGAGTCAGATGATGAACTTTCTAGGGAAAATACTTCTCAGTATCTTGTTAATGGTGAGAAAGAATTAGACACAGGTTTGAAGCCTGAACTTTCGAGCGAGGCTGAACAGGTAGGTAGCCACAAAGTAGCCACTGGTGATAATTACAAAGACCAGGGTGGTGGAATTGCTCAATCAGATGAGGAGGAAGAGAATAAACCCAAGAAAAATGAAGAGAAAGCTGTAGATCCTTTAAATGATGATAAGGCGGTTTCATCTTTTACAATAGAGGAAGCACTTTCATCACCAGGGTCTACTTCAGAGGCTGAGGCAATACGAGCAGAACATGAATACAATTACGATCAAAAGGATAATAATAATATGCAACCTGTTGTAGAACATACTAAGCCTGTTGTTTCTGAATCTAATGTCAACGACTTTAGCATTTCTCAGGCTTTGGATGCCTTGGCAGGGATTGATGATTCCACCCAGTTAGAGGGTTCAGAAATTGAAGGTGAGGACAAGAAGAGTGATTCCTTAGTTGACAATCATTGCTCAGGTAATGATAATGAAACATCATCAGGGAAGAAAGAATGTGGTAACATGGATTCGTCTGCAAATCCTAAAAGGCTAAGTGGTCCTCGTATTATTAATATCCTGGAGAGAAGAAGAGATAAGGAGCATAATGTTAGAAGTGGACAGGAAGATGAGGAATTCACTTCAGACCTGGTCTCAATTAATAGAAGCTATTTGATTAGATCTCAGTCAGCCCAAGCAGGCCTGGATGGAAATGAAAAAGCCAAACTCCTTGATGATTTGGATGGCAATGTGGACATGACTTCAAATGTGTATTTAGATTCTGTTCACGATAATTTTTTCTTGAAATACGTTGCCACAAACATGCCTACTAAATCACTTGATAAGGATACAACTACAGCTTTGTTGCTTGATTATATACCAGAAGAAGGCCAGTGGAAGTTTATAGAACAACCGGGAAATGAAAATGGTGCTATTTCAGCATCTGAAGGAGTTGATGGACAAGTGAATGCCTATGCACATGCAAAAGTGAAGAATACTGATGATGTTATTGAGCCACTTTATATGATCTTGGACACTGACAATCAGCCAGAGCCAGTTGGGGAATATCAAACCACGGTTAATGGAAAGGAAGAAATCGAATGTAATGATGGACAAAAGGATTTGGAATACTTTGTTAGAACTATTATACAGGATCGTTTGCAGGTTGAAGTTGGTTGTAGGTTGAGTGAAGTTAACAAGGACTTAAAATTGGGTGTTGACAGAGACATCAAACATGTTGCAAATTTGTTGTCAGTAGCTGTTGGGTACGGCAGTGGGTGCAGCCATTGTTTAGGAAGTAAAAGTGACAGCATCGATTCCATTGCAGAAAAAATGGGTACTCTTTGTGGCGAGCAGATTATTAGATCAGTTTCATCTTCTGTTCAGGAAACTGTTTATTTGAAAAAAATTCTTCCTTTGGGTGTTATTGTTGGCTCTAGCTTGGCAGCTTTAAGAAAACATTTTCATGTGACTACACTGCACGATGATAACCAGGGCCAATGCTTGCTCGTTGATCAAGGTAAGAAATCTGGTGAAAGAAATCATGGTGAAGCTAATAATGGGAGAGAGCCTACTCAAAATGTTATACTGACCGATACAGTGTGTGAGGAAGGAGGATGTGCTGAAATGAGAAATTTAAATAAAGATACTGTTGTGGTAGGAGCTGTCACAGCTGCTCTTGGGGCATCTGCATTGCTGGTACATCAGCAGAACAAGGAAGGGAAAACCGTCCTTTACTTGGTTTTTGAATACATGGATTCCGATATGAAGAAATTCATCAAGAGTTTCCGTCATATGGGAGAAAATATTTCCGTTAACACTGACAAGAGTTTGATGTACCAACTCTACAAGGGCGTTGCCTTTTGCCATGGTCATGGAATCCTGCACAGGGACCTGAAACCACACAATCTCTTGATGGACCGGAAGACTATGATGCTCAAAATTGCAGACCTTGAGTTGGCTCGAGCATTTCTTGTGCCAATTAAGAAGTATACTCATGAGATATTAAACCTCTGGTATAGAGTTCCCGAAGTTTTGTTGGGGGCAACTCATTACTCCACAGCTGTAGATATGTGGTCTGTTGCCTGCATATTCGCCGGACTTGCCACCAAGCAGGCTCTCTTTCCTGGAGGTTCTGAGTTGCAACAGCTCCTTCATATCTTCAGGCTATTAGGGACCCCAAATGAAAAGAGTTTATGTGAAACTGATAAAACTACTGAAAATTCATTGAAGTCCGAGGAGAAAGCTAGTCTTCAGAAAGAGCCAGAGAGACATGATGAGCAGATAGTATCTGAAAAGAATCATAACATTGTCACTGCTCTTGCTGAGAAGGCGATGTCAGTTGCTAGTCCGGTGGTGCCAAAGAAGGAAGATGGTGAAGTGGATGAAGAAAGGCTAGTCTCTATGTTAGCTGAATTAGGAGAGAAGGGTGGCATATTGAAGCTAGTAGGCAGAATAGCTTTACTCTGGGGTGGTATACGTACTGCAATGAGTGTGACTGAAAAACTTATCTCAATTCTTCGAATAGCAGAACGCCCTTTGTTTCAGAGGATTCTTTGGTCTGTTGGCTTGGTGCTTGTTTTATGGTCACCAATTACTCTTCCACTGCTTCCCAAACTTGTTGATAGCTGGACTTCTCGGACTCCCTCAAAAATTGCTAATCTTGCTTGTGGTTTTGGTCTTTATATTGCTCTCACGATTCTTGTTATGATGTGGGGCAAAAGAATACGTGGGTATGAAAATCCAGCAAAAGAATATGGGCTGGATTTGACATCTTGGTCGAAGTTTTATGATTTTATTATGGCCTTCTTTGGAGGAGTTGCGGTTCTGTTGGGAATACAATTTGTGAACAGATTTCTTGGCTATACAACTCTTTCAATGCCAGCTATTCCAACTTTGGAAAACTTGGTTTCATGGTTGAAGGTGTTTGGGGGAAGTCTGTTGCTGGTTAGTATTGGAATTATATCATCAATAATTGTTACAGCTGTGGAAGAATTGCTCTTTAGGTCATGGTTAACTGAAGAAATTGCTTTGGATCTCGGATACTACCCAGGGATTATCATTTCAGGGCTCGCTTTCGCTATATTACAGAGGTCCCTGCAAGCGATACCGGTTTTATGGGTGTTGTCCTTGGGTTTGGCAGGTGCCCGCCTAAGGAGGGAAGGCTGCCTGTCGATTCCTATTGGCTTACGTGCAGGCTGCTGTCCAGCCTATAAATATGTGTATTCACAAGCTATTTTTCGTTACTCAATGCAAAAGGAAGTACTTTCTTCCTTTTATACTGGTTCTTCAACTCCGATAGCATCTTCGCAATGGTTTCAGAAGCTTCTTGACTCCCCAATTTATGGGAAGCGACCTCCCTATGCAACACTTCAAGGGCTCGATTTGCTTCCTCACCAAGTTGCCTCTGACTGTGTTCTAGCTTTCTGA 5994 42.78 MKSFNVGNWKASLPNTWQKEMYLWVSISESITNFTPHIKPINSNNQPPPPLFHSAFSLFVKFSFSSNYSSQIMTSTFDCCSPLAGKLQSGPSFLLINPFHVREFRVFRRRRLKHYRHAHHRTAFTVRSQSNPFESLFHNLVSQVTTVNSLELIAPALGFSSGVALYLSNVVSAKNSAVSDIGEWILLSSPTPFNRFVFLRCPSIAFPGSDTNHVEDVSEKLVKEDRHFVRLNSGRMKATTGEDEKEDILTYQRLCISTEDGGVISLDWPSNLNLREEQGLDTTLLLVPGTPEGSMDKNVRLSVIEALGRGLFPIVMNPRGCAGSPLTTARYVDCWKATANTLSFDRFCYCNSAMINISVAAWFCHFKPVYVNVSVALASDDIYTAVQFISKARPWTALMAIGWGYGANMLTKYLAEVGERTPLTAATCIDNPFDLEEATQTPPYHMAIDHDLTGGLINILRSNKELFQGKAKGFDVEKALEAKSVRDFEKLISSVSHGFNSIEDFYSKSSTRSVVGNVKIPVLYIQWLTAVELGLLKGRHPLLKDVDITINSSRGLALVEGKTVEERGKAIRQLGYNWSDASSGYQSTRFVKKKLEESHSSIHTDLRSQNNSQSKSQLEDKGSLEIEVGVLNQTSSISEDMGEKDEVCSEDTEKGQVLRTAEVVMNILDMTNPGTLTEEEKKKVLNAVGKGETLMKALQDAVPEEVRGKLTTALSGILHSQGSNLKVNDLIGSSQKSNATLELKRETEEKVRHVAEAEGLSQISSPLHKMGAVNDVLDGSDTYQPTKDKFIGELESESPSSDKLQKSIDQNGSQALGSHGDDTISSTRKETSGSGKTESDDELSRENTSQYLVNGEKELDTGLKPELSSEAEQVGSHKVATGDNYKDQGGGIAQSDEEEENKPKKNEEKAVDPLNDDKAVSSFTIEEALSSPGSTSEAEAIRAEHEYNYDQKDNNNMQPVVEHTKPVVSESNVNDFSISQALDALAGIDDSTQLEGSEIEGEDKKSDSLVDNHCSGNDNETSSGKKECGNMDSSANPKRLSGPRIINILERRRDKEHNVRSGQEDEEFTSDLVSINRSYLIRSQSAQAGLDGNEKAKLLDDLDGNVDMTSNVYLDSVHDNFFLKYVATNMPTKSLDKDTTTALLLDYIPEEGQWKFIEQPGNENGAISASEGVDGQVNAYAHAKVKNTDDVIEPLYMILDTDNQPEPVGEYQTTVNGKEEIECNDGQKDLEYFVRTIIQDRLQVEVGCRLSEVNKDLKLGVDRDIKHVANLLSVAVGYGSGCSHCLGSKSDSIDSIAEKMGTLCGEQIIRSVSSSVQETVYLKKILPLGVIVGSSLAALRKHFHVTTLHDDNQGQCLLVDQGKKSGERNHGEANNGREPTQNVILTDTVCEEGGCAEMRNLNKDTVVVGAVTAALGASALLVHQQNKEGKTVLYLVFEYMDSDMKKFIKSFRHMGENISVNTDKSLMYQLYKGVAFCHGHGILHRDLKPHNLLMDRKTMMLKIADLELARAFLVPIKKYTHEILNLWYRVPEVLLGATHYSTAVDMWSVACIFAGLATKQALFPGGSELQQLLHIFRLLGTPNEKSLCETDKTTENSLKSEEKASLQKEPERHDEQIVSEKNHNIVTALAEKAMSVASPVVPKKEDGEVDEERLVSMLAELGEKGGILKLVGRIALLWGGIRTAMSVTEKLISILRIAERPLFQRILWSVGLVLVLWSPITLPLLPKLVDSWTSRTPSKIANLACGFGLYIALTILVMMWGKRIRGYENPAKEYGLDLTSWSKFYDFIMAFFGGVAVLLGIQFVNRFLGYTTLSMPAIPTLENLVSWLKVFGGSLLLVSIGIISSIIVTAVEELLFRSWLTEEIALDLGYYPGIIISGLAFAILQRSLQAIPVLWVLSLGLAGARLRREGCLSIPIGLRAGCCPAYKYVYSQAIFRYSMQKEVLSSFYTGSSTPIASSQWFQKLLDSPIYGKRPPYATLQGLDLLPHQVASDCVLAF 1997
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1193734 1227196 + Lsi11G001110.1 Lsi11g00111 673278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00111 1997 PANTHER CAAX AMINO TERMINAL PROTEASE 96 330 - -
Lsi11g00111 1997 PANTHER CAAX AMINO TERMINAL PROTEASE 527 1429 - -
Lsi11g00111 1997 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 96 330 - -
Lsi11g00111 1997 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 1591 1925 - -
Lsi11g00111 1997 MobiDBLite consensus disorder prediction 795 957 - -
Lsi11g00111 1997 MobiDBLite consensus disorder prediction 892 915 - -
Lsi11g00111 1997 SUPERFAMILY Protein kinase-like (PK-like) 1427 1593 IPR011009 -
Lsi11g00111 1997 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1482 1494 IPR008271 GO:0004672|GO:0006468
Lsi11g00111 1997 ProSiteProfiles Protein kinase domain profile. 1359 1626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00111 1997 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 376 526 - -
Lsi11g00111 1997 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 527 1429 - -
Lsi11g00111 1997 MobiDBLite consensus disorder prediction 994 1044 - -
Lsi11g00111 1997 MobiDBLite consensus disorder prediction 604 619 - -
Lsi11g00111 1997 SUPERFAMILY alpha/beta-Hydrolases 247 526 IPR029058 -
Lsi11g00111 1997 MobiDBLite consensus disorder prediction 1588 1614 - -
Lsi11g00111 1997 Gene3D Phosphorylase Kinase; domain 1 1426 1439 - -
Lsi11g00111 1997 SMART serkin_6 1298 1626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00111 1997 PANTHER CAAX AMINO TERMINAL PROTEASE 1591 1925 - -
Lsi11g00111 1997 MobiDBLite consensus disorder prediction 601 620 - -
Lsi11g00111 1997 MobiDBLite consensus disorder prediction 803 832 - -
Lsi11g00111 1997 MobiDBLite consensus disorder prediction 1587 1614 - -
Lsi11g00111 1997 MobiDBLite consensus disorder prediction 1012 1037 - -
Lsi11g00111 1997 PANTHER CAAX AMINO TERMINAL PROTEASE 376 526 - -
Lsi11g00111 1997 Pfam Protein kinase domain 1430 1599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00111 1997 Gene3D Transferase(Phosphotransferase) domain 1 1440 1625 - -
Lsi11g00111 1997 MobiDBLite consensus disorder prediction 997 1011 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02422 Lsi-Chr4:31327953 Lsi11g00111 Lsi-Chr11:1193734 2.03E-94 dispersed
Lsi09g00139 Lsi-Chr9:1425681 Lsi11g00111 Lsi-Chr11:1193734 5.39E-32 dispersed
Lsi11g00111 Lsi-Chr11:1193734 Lsi04g00138 Lsi-Chr4:1583870 7.05E-55 dispersed
Lsi11g00111 Lsi-Chr11:1193734 Lsi08g01606 Lsi-Chr8:24018415 3.23E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84006 PF00069 Pkinase 9.90E-35 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00111 K07052 - csv:101219570 2075.06