Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00122 ATGGTGTTCCAAGATTTCGACCAAATCTCCGAACGCCGACGCGCCGAGAGGGCACGTAAGTTCCGAAAGAGAGTCACCATCGCTGTGGTCTCAGCCTCTGTGATTCTCCTTGTCGTTGCTGCCGCCGTGTTCGTCCAGGTCTCCTCCTCCTCCAAATCCACCACCAAAAATGGAGACAGCAGCAGCAGTGGCAACTCCAAACAACCCGTGCCACCCGACACGAAACAAGTGTCACGCGTCGAGAAAATGATTACCATGATATGCAACTCGACAGACTACAAAGGCAAATGCGAGAGCACTCTGAAGGATGGCGTCCACACGGATCCTAATTCCTCAGACCCGAAAGACCTCATCAAGCTTGCGATCTCGGCTGCAGCGGACGAGGTCAAATCTGCGGTGAAAAAGGCCACGGGGTTCAACTTCGCAACGCCGGAGGAAAAGGGGGCGTTCGAGGACTGCAAGGTGCTGTTGGAAGACGCGGTGGAGGAATTGGAGATGTCTATGAGCGAAGTGAGCAAGAAGAATATGGGAAAGCTGACGGCGAAAACGACGCCAGATCTGAACAGCTGGCTAAGCGCGGTGATGTCGTATCATGAAACTTGTGTTGATGGGTTCCCAGAGGGGAAGATGAAAACCGAAATGGAGAACGCGGTGAAGGCTGGAAAAGAACTCACTAGTAATTCCTTGGCGATGATATCGCAGGTGGCTTCCTTCTTCTCCACGTTCGAGATGCCTGAGGGAGCTGCAACACGACGTCGTCTTATGGCCAACGATGGGGTGCCAACTTGGATGAACAGCAATGAGCGGAGGATGTTGAAGAGCGCTGCTGCCGGGGATAAGCCCAAGCCTAACGTTGTGGTTGCCAAAGATGGGTCTGGAGATTTCAAAACTATTAACGAAGCTTTGGCTGCCATGCCTGCCAAATATGATGGACGGTACGTGATCTATGTGAAGGAAGGAATCTACGAAGAGACAGTGGTGATTACGAAAAAAATGGCAAATGTTACAATGTACGGAGATGGATCTCAAAAGAGCATGATAAGTGGGAGCAAGAACTTTGTGGATGGAGTCAGAACCTTCCAAACCGCAACATTTGTGGCACTCGGAGAAGGGTTCTTGGGGCAAGGCATGGGATTCAGAAACACGGCGGGTCCTGAAAAGCACCAAGCCGTAGCGGCAAGAGTCCAAGCAGACCGAGCCATATTTGTGAACTGTCGGTTCGAGGGGTACCAGGACACGTTATACGCCCAAGCCCATCGTCATTTCTACAGAAGCTGTCTGATAACAGGCACCATCGACTTCATCTTCGGTGACGCCGCCGCCATTTTCCAAAACTGCAACATGATGCTCAGAAAGCCGTTAGACAACCAACAGAACATAGTCACAGCACAGGGCAGGATTGACAAGCATGAAACCACAGGCATAGTCCTCCAAAACTGCAAGATTTTGCCCGACAAGACGCTGGAGCCTGTGAAGTCCCAATTTAGAAGCTACTTGGGGAGGCCTTGGAAAGAGTTCTCTAGAACCATTGTAATGGAGTCCACCATTGAAGACATCATTCATCCCGATGGTTGGATGCCCTGGGAAGGGGATTTTGCACTCAAAACCTTGTACTATGCTGAATTTAACAACGAAGGCCCTGGGGCTAAGACCGATGCCAGGGTCAAATGGCCTGGCTACAAGGTGATTGATAAGGACGAGGCTGCAAAGTTTACCATAGGAACTTTTCTAGAGCTGGATTGGATCGAGAGCACCTCCGCTCCTGTTCATGTCGGCCTATTTTGA 1785 50.92 MVFQDFDQISERRRAERARKFRKRVTIAVVSASVILLVVAAAVFVQVSSSSKSTTKNGDSSSSGNSKQPVPPDTKQVSRVEKMITMICNSTDYKGKCESTLKDGVHTDPNSSDPKDLIKLAISAAADEVKSAVKKATGFNFATPEEKGAFEDCKVLLEDAVEELEMSMSEVSKKNMGKLTAKTTPDLNSWLSAVMSYHETCVDGFPEGKMKTEMENAVKAGKELTSNSLAMISQVASFFSTFEMPEGAATRRRLMANDGVPTWMNSNERRMLKSAAAGDKPKPNVVVAKDGSGDFKTINEALAAMPAKYDGRYVIYVKEGIYEETVVITKKMANVTMYGDGSQKSMISGSKNFVDGVRTFQTATFVALGEGFLGQGMGFRNTAGPEKHQAVAARVQADRAIFVNCRFEGYQDTLYAQAHRHFYRSCLITGTIDFIFGDAAAIFQNCNMMLRKPLDNQQNIVTAQGRIDKHETTGIVLQNCKILPDKTLEPVKSQFRSYLGRPWKEFSRTIVMESTIEDIIHPDGWMPWEGDFALKTLYYAEFNNEGPGAKTDARVKWPGYKVIDKDEAAKFTIGTFLELDWIESTSAPVHVGLF 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1390273 1392886 - Lsi11G001220.1 Lsi11g00122 673289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00122 594 ProSitePatterns Pectinesterase signature 2. 428 437 IPR033131 -
Lsi11g00122 594 Coils Coil 154 174 - -
Lsi11g00122 594 CDD PMEI-like_3 87 237 - -
Lsi11g00122 594 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 82 235 IPR035513 -
Lsi11g00122 594 Pfam Pectinesterase 284 578 IPR000070 GO:0030599|GO:0042545
Lsi11g00122 594 SUPERFAMILY Pectin lyase-like 281 578 IPR011050 -
Lsi11g00122 594 TIGRFAM PME_inhib: pectinesterase inhibitor domain 80 235 IPR006501 GO:0004857
Lsi11g00122 594 PANTHER PECTINESTERASE 14 592 - -
Lsi11g00122 594 Pfam Plant invertase/pectin methylesterase inhibitor 83 231 IPR006501 GO:0004857
Lsi11g00122 594 Gene3D Invertase/pectin methylesterase inhibitor family protein 80 236 IPR035513 -
Lsi11g00122 594 SMART PMEI_2 79 231 IPR006501 GO:0004857
Lsi11g00122 594 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 45-RELATED 14 592 - -
Lsi11g00122 594 MobiDBLite consensus disorder prediction 51 78 - -
Lsi11g00122 594 Gene3D - 278 593 IPR012334 -
Lsi11g00122 594 MobiDBLite consensus disorder prediction 51 73 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01558 Lsi-Chr5:23346044 Lsi11g00122 Lsi-Chr11:1390273 1.98E-170 dispersed
Lsi07g00642 Lsi-Chr7:6857228 Lsi11g00122 Lsi-Chr11:1390273 4.91E-140 dispersed
Lsi09g00759 Lsi-Chr9:8689791 Lsi11g00122 Lsi-Chr11:1390273 0 dispersed
Lsi09g00760 Lsi-Chr9:8705869 Lsi11g00122 Lsi-Chr11:1390273 1.68E-170 dispersed
Lsi11g00122 Lsi-Chr11:1390273 Lsi02g02855 Lsi-Chr2:34762746 4.69E-142 dispersed
Lsi11g00122 Lsi-Chr11:1390273 Lsi09g01450 Lsi-Chr9:22477690 3.18E-180 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00122 - - csv:101211510 1041.57