Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00133 ATGGGGGATGAAGAGAATAATGGGAATGGGAGTAGCCGGTTGGGGCCGCCGCGAGGTCCAGCGGAGCACTGTGTGGAAATTGTTCATCCGGTGGTTCCGCCGCCGAGAAGAAGCTGGATACAGAAGCTGCGCAACCGGCTGAAGGAAATATTTTTTCCCGACGATCCTCTCCGGCAGTTCAAAGGGCAGTCGCCGGCGAGAAAATGGGTTATTGGAGCTCAATATATATTCCCAATTCTTCAATGGGGCCCTCATTATAATCTTAGCCTCTTTAAATCTGATGTTGTTGCTGGCCTCACCATTGCTAGCTTGGCCATACCTCAGGGTATTAGCTATGCTAAGCTTGCTAATTTGCCTCCCATTGTTGGGCTTTATTCAAGCTTTGTTCCACCACTAGTATATGCTGTTCTTGGAAGCTCAAGAGATCTAGCAGTTGGACCTGTTTCAATAGCATCACTAATATTGGGTTCCATGTTGAGGCAAGAAGTTTCTCCCATCAAAGATCCCATTCTTTTTCTTCAACTTGGCTTCACTTCTACCTTCTTTGCTGGTCTCTTCCAAGCTTCCCTCGGCTTCTTGAGACTTGGATTTATAATAGATTTTTTATCGAAGGCGACTTTGATTGGATTCATGGCAGGAGCAGCCATTATTGTGTCTCTGCAGCAACTTAAAGGGTTGCTTGGAATCACCCATTTCACTAAACAGATGGGTTTAATTCCTGTTTTGTCCTCAGTTTTTCATCACACTCACGAGTGGTCATGGCAGACTATACTGATGGGCTTTTGTTTCCTTCTCTTTCTTCTCTTCACCAGACACATTATAGGAAAGTTGCAAGAAGGATTGAACCCACCTTCATGGAACATGCTTCGTTTTGAAGGGTCACACCTTGGCCTTGTTATTAAGACTGGCCTCGTCACCGGCATCATCTCTCTCACTGAAGGAATCGCAGTGGGGCGAACATTTGCAGCTATAAAAGACTACCGCGTTGATGGTAACAAGGAAATGATTGCAATCGGCCTCATGAATGTCGTTGGATCTTTCACTTCTTGCTATATCACAACAGGTGCATTTTCAAGGTCAGCAGTGAACCATAATGCGGGGGCAAAAACCGCAGTGTCGAACATCATAATGTCAGTGACGATAATGGTGACGTTGTTGTTTCTGATGCCTCTGTTTCAGTATACGCCCAATCTGGTGTTGGCCGCCATCATCGTCACCGCCGTCGTCGGCCTTATCGACGTCCCTGCGGCCTACGGCATTTGGAAGGTCGACAAGTTCGATTTTGTTGTGATGCTTTGTGCCTTCTTCGGCGTCATTCTCATCTCTGTTCAACATGGCCTCGCCATTGCTGTTGGCATATCAATTTTCAAGATCATCCTACAAATCACAAGGCCAAAAACAGTGATGTTGGGGAACATAGCTGGAACAGATATATATAGAAACCTTCACCATTACAAGGATGCAGTGAGTGTCAAAGGCTTTCTTATTTTAAGCATTGAAGCTCCAATCAACTTTGCCAATACCACATATCTCAATGAAAGGATTTTGAGATGGATCGAGGATTATGAAGCTGATCAAGATCATGTTAAGGAGGGCTCGAGCCTTCAGTTTGTGGTTTTAGATTTATCGGCTGTGAGTGCTATAGACACTAGTGGAGTCCTACTCTTCAAGGATCTTAGGAGAGCATTGGAAAAGAAGGGTGTTGAGCTAGTGTTGGTGAATCCATTGGGTGAAGTTTTGGAAAAGTTGCAAAAAGCAGATGAAAATCAAGAGATTTTGAGGCCAAATAATGTGTTCTTGACTGTGGGAGAGGCCATTACTTCACTAGCAACAACAATGAAGGGACAACCCTCAACTATATAG 1863 44.82 MGDEENNGNGSSRLGPPRGPAEHCVEIVHPVVPPPRRSWIQKLRNRLKEIFFPDDPLRQFKGQSPARKWVIGAQYIFPILQWGPHYNLSLFKSDVVAGLTIASLAIPQGISYAKLANLPPIVGLYSSFVPPLVYAVLGSSRDLAVGPVSIASLILGSMLRQEVSPIKDPILFLQLGFTSTFFAGLFQASLGFLRLGFIIDFLSKATLIGFMAGAAIIVSLQQLKGLLGITHFTKQMGLIPVLSSVFHHTHEWSWQTILMGFCFLLFLLFTRHIIGKLQEGLNPPSWNMLRFEGSHLGLVIKTGLVTGIISLTEGIAVGRTFAAIKDYRVDGNKEMIAIGLMNVVGSFTSCYITTGAFSRSAVNHNAGAKTAVSNIIMSVTIMVTLLFLMPLFQYTPNLVLAAIIVTAVVGLIDVPAAYGIWKVDKFDFVVMLCAFFGVILISVQHGLAIAVGISIFKIILQITRPKTVMLGNIAGTDIYRNLHHYKDAVSVKGFLILSIEAPINFANTTYLNERILRWIEDYEADQDHVKEGSSLQFVVLDLSAVSAIDTSGVLLFKDLRRALEKKGVELVLVNPLGEVLEKLQKADENQEILRPNNVFLTVGEAITSLATTMKGQPSTI 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1475689 1486016 - Lsi11G001330.1 Lsi11g00133 673300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00133 620 CDD STAS_SulP_like_sulfate_transporter 485 602 - -
Lsi11g00133 620 ProSiteProfiles STAS domain profile. 484 609 IPR002645 -
Lsi11g00133 620 PANTHER BNAA09G30120D PROTEIN 273 618 IPR030313 -
Lsi11g00133 620 PANTHER SULFATE TRANSPORTER 28 273 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lsi11g00133 620 PANTHER BNAA09G30120D PROTEIN 28 273 IPR030313 -
Lsi11g00133 620 ProSitePatterns SLC26A transporters signature. 120 141 IPR018045 GO:0008271|GO:0008272
Lsi11g00133 620 SUPERFAMILY SpoIIaa-like 490 609 IPR036513 -
Lsi11g00133 620 PANTHER SULFATE TRANSPORTER 273 618 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lsi11g00133 620 Pfam Sulfate permease family 91 275 IPR011547 GO:0016021
Lsi11g00133 620 Pfam STAS domain 485 605 IPR002645 -
Lsi11g00133 620 Gene3D STAS domain 464 612 IPR036513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00959 Lsi-Chr9:12534076 Lsi11g00133 Lsi-Chr11:1475689 0 dispersed
Lsi09g00960 Lsi-Chr9:12544281 Lsi11g00133 Lsi-Chr11:1475689 0 dispersed
Lsi11g00133 Lsi-Chr11:1475689 Lsi02g02778 Lsi-Chr2:34041681 0 dispersed
Lsi11g00133 Lsi-Chr11:1475689 Lsi02g02261 Lsi-Chr2:29179045 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00133 K17471 - csv:101219163 1088.56