Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g00146 | ATGAAAGCTCCTCCAAATGGGTTTCTGGCCAATTCTGGAGAAGGTGAAAGGAAGAATATTAATTCTGAGTTATGGCATGCTTGTGCTGGGCCTCTTGTTTCATTACCTCCAGTTGGAAGTCTTGTGGTTTACTTCCCTCAAGGCCACAGTGAACAAGTTGCAGCATCGATGAATAAGGAGACTGATTTCATTCCAAACTACCCTAACCTTCCTTCAAAGTTGATCTGCATGCTCCACAATGTCACATTACATGCTGATCCTGAAACAGATGAAGTGTATGCACAAATGACCCTTCAACCAGTGAATAAATATGAAAAAGAAGCTTTGTTGGCATCTGATATTGGCCTCAAACAAAGCAGGCAGCCTGCAGAATTCTTCTGCAAAACTCTAACAGCTAGTGACACCAGCACTCACGGTGGATTTTCTGTGCCTCGTCGAGCAGCTGAGAAGATTTTCCCCCCATTAGACTATTCGATGCAACCCCCTGCTCAGGAACTAGTGGCTAGAGATTTGCATGATAATTCATGGACATTCAGACATATTTACCGCGGCCAACCAAAACGACACCTTCTGACCACTGGTTGGAGTGTTTTTGTTAGCACAAAACGACTCTTTGCTGGAGACTCTGTGCTCTTTATAAGAGATGAAAAGTCACAGCTTCTCTTAGGCATAAGGCGTGCTAACAGGCAGCAGCCAGCTCTCTCTTCGTCAGTCATATCAAGTGATAGCATGCACATAGGAATTCTTGCTTCTGCTGCTCATGCTGCTGCAAATAACAGTCCTTTTACTATATTTTACAACCCTAGGGCCAGTCCTTCTGAATTTGTGATACCTTTGGCCAAGTATAATAAAGCAATGTATACGCAAGTTTCACTTGGCATGCGATTTAGGATGATGTTTGAAACTGAGGAGTCGGGAGTACGCAGATATATGGGTACGATTACTGGTATCAGCGACATGGATTCTGTACGATGGAAAAATTCACAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCGGCAGCTGGTGAACGACCTAACCGAGTTTCAATATGGGAAGTTGAGCCTGTTGTGACCCCCTTTTACATATGTCCGCCTCCATTCTTCAGACCCAAATTCCCTAAACAACCAGGGATGCCAGATGACGAATCTGATATTGAAAATGCGTTTAAGAGAGCCATGCCATGGTTTGGTGATGACTTTGGCATGAAAGATACACCAAGCTCAATCTTTCCTGGTTTAAGTTTAGTGCAGTGGATGAGCATGCAACATAATAATCAGTTCCCAGCAGCTCAATCTGGAATTTTGCCGTCCATGGTTGCTCCTAGTGCTCTGCATGGAACTCTTACTAATGATGACCCATCCAAATTATTGAGTTTTCAAGCACCAGTACTGTCTTCACCAAATCTCCAATTCAGCAAAGCAAATCAACAGAACCAAGTTGGCCAATTGCCTCCAACTGCGTGGTCTCAACAGCAGCAGCTGCAGCAAGTATTACAAGTTCCTGCAAGCCAACAGTTACAGCAGCAGCAGCAGTTGCCATCCCAGCAGGAACTACAGCAGCAGCAACAACAACTGCAGCAGCTGCCCCAGCAGCAGCAACTCCAGTCTCAACAGCCACGGCAACAGCAGACCTCGCAATCTGTTCTTTTGAACAACAGTGTAACTGCTGCTAACCATTTGCCAAATCCAAGTTTGCAACAACCACTTGTATACTCTCAGCTACAACAACAACAATTGCTTGCAGGCAATATTCAATCACATCAAACTAGCCAACCATCTAATAAGAACTCATTTCAGACTCCATCGTTATCGGAAGAAACACAGTTTCAGCCACAAATAGAGCAGCAACCTAGCCTTCTTGTGAGACACCAGCAGCCAACACAATTTCAACAGGCCCCACTACAATTATTGCAACAAAGTCTGTCTCAAAGAGCACAACAGCAGCCACAAGTTCAGCAATTTTCACAGCCAATCCCAACTGAGCAACAACTTCAATTGCAGCTGCTACAGAAGCTGCAGCAACAGCAGCAGCAGCAGCAACAACCATTGCTCTCGCCAGCTAGCCCACTATTACCACCTCAGCTGCTACAGCAGCAGCAGCATGTTCATCAGCAAAACCAGCAGTTACCACCATTGCCGTTGCCCAATCAGCAGCAGTTCAATAATAGTGGAGGAAGCTTCCAAACAGAAAAACTTAACAGCAATGGTTTCACAAATTTAGGTCTCATGCAGTCCCAGCAGGTTCCAATAACCCAATCCCGTAATCAATTCAAACCAACCACGGCAATTAGAGCATACTCTGGACTGACTGATGGAGATGCTCCGTCTTGTTCAACCTCACCTTCCACTAATAATTGCCCAGTTACAGTATCAAACCTGCTCAATAAGAACCAACAAGGAGCAGCCACACTTGGTGGAGATTCAGTAGTTGAGCCTGCAACTAACCCGACACAGGAGCTACAGAGCAAACCTGATTTGCGGATCAAACATGAGTTTCCTAACTCAAAAGGATTGGACCAACTAAAATATAAAGGCACTCTTCCTGATCAGCTAGAAGCGGCTTCTTCTGGGACATCATATTGTTTGGATGCTGGCACCATTCAGCAGACTCTCCCACTCCCTACATGTTTGGATAATGATGTACAATCACATCCACGTAACAATATCCCTTTCAGTAATAGTATTGATGGATTGCCACCAGATACCTTATTGTCAAGGGGATATGACTCTCAAAAAGATCTTCAGAACTTACTTTCTAACTATGGTGGGGGTGTGCCAAGAGATATTGAAACAGAGTTGTCCACTGCTGCAATAAGCTCTCAGTCCTTTGGGGTTCCAAACCTGCCTTTCAAGCCTGGCTGCTCAAATGATGTCAACGTAAATGAAGCTGGAGCTTTGAGTAGTGGATTGTGGGCAAACCACAGTCAACCATCTAAAACTGCTAAAATTCTGAAGGTTCAAAAGCGTGGATCAGTGGGTAGATGTATCGATGTCAATCGCTACAAAGGATATGATGAGCTTAGGCATGATCTTGCCCGCATGTTCGGCATTGAAGGGCAGTTAGAAGATCCTCAACGAACTGATTGGAAACTTGTTTATGTGGACCATGAAAATGATATACTTCTAGTTGGTGATGATCCTTGGGAGGAGTTTGTGAGCTGTGTTCAGAGCATAAAGATCCTATCATCCGCTGAAGTACAGCAGATGAGTTTGGATGGGAATTTGGGTCACATTCAGACTCCCAATCAAGCTTGCAGTGGGACGGATAGTGGAAATGCATGGAGAGGGCAGTCCGATCAGCTCATGAGGCAAGGTCTGCAGGAAATAGTAACTCGGCAAATGTCCGATACTGCAAATATGGAGACGGACTTGCCAACCAATTGCAATTTCCAGTAG | 3399 | 44.87 | MKAPPNGFLANSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLICMLHNVTLHADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQSRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVARDLHDNSWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALSSSVISSDSMHIGILASAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDMDSVRWKNSQWRNLQVGWDESAAGERPNRVSIWEVEPVVTPFYICPPPFFRPKFPKQPGMPDDESDIENAFKRAMPWFGDDFGMKDTPSSIFPGLSLVQWMSMQHNNQFPAAQSGILPSMVAPSALHGTLTNDDPSKLLSFQAPVLSSPNLQFSKANQQNQVGQLPPTAWSQQQQLQQVLQVPASQQLQQQQQLPSQQELQQQQQQLQQLPQQQQLQSQQPRQQQTSQSVLLNNSVTAANHLPNPSLQQPLVYSQLQQQQLLAGNIQSHQTSQPSNKNSFQTPSLSEETQFQPQIEQQPSLLVRHQQPTQFQQAPLQLLQQSLSQRAQQQPQVQQFSQPIPTEQQLQLQLLQKLQQQQQQQQQPLLSPASPLLPPQLLQQQQHVHQQNQQLPPLPLPNQQQFNNSGGSFQTEKLNSNGFTNLGLMQSQQVPITQSRNQFKPTTAIRAYSGLTDGDAPSCSTSPSTNNCPVTVSNLLNKNQQGAATLGGDSVVEPATNPTQELQSKPDLRIKHEFPNSKGLDQLKYKGTLPDQLEAASSGTSYCLDAGTIQQTLPLPTCLDNDVQSHPRNNIPFSNSIDGLPPDTLLSRGYDSQKDLQNLLSNYGGGVPRDIETELSTAAISSQSFGVPNLPFKPGCSNDVNVNEAGALSSGLWANHSQPSKTAKILKVQKRGSVGRCIDVNRYKGYDELRHDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGNLGHIQTPNQACSGTDSGNAWRGQSDQLMRQGLQEIVTRQMSDTANMETDLPTNCNFQ | 1132 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1625449 | 1637495 | + | Lsi11G001460.1 | Lsi11g00146 | 673313 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g00146 | 1132 | CDD | B3_DNA | 125 | 226 | IPR003340 | GO:0003677 | |
Lsi11g00146 | 1132 | Pfam | Auxin response factor | 252 | 334 | IPR010525 | GO:0003677|GO:0005634|GO:0006355|GO:0009725 | |
Lsi11g00146 | 1132 | Gene3D | - | 978 | 1071 | - | - | |
Lsi11g00146 | 1132 | PANTHER | AUXIN RESPONSE FACTOR 19 | 1 | 1097 | - | - | |
Lsi11g00146 | 1132 | SUPERFAMILY | CAD & PB1 domains | 979 | 1060 | - | - | |
Lsi11g00146 | 1132 | MobiDBLite | consensus disorder prediction | 585 | 614 | - | - | |
Lsi11g00146 | 1132 | Gene3D | - | 124 | 227 | IPR015300 | - | |
Lsi11g00146 | 1132 | MobiDBLite | consensus disorder prediction | 804 | 823 | - | - | |
Lsi11g00146 | 1132 | ProSiteProfiles | PB1 domain profile. | 982 | 1075 | IPR000270 | GO:0005515 | |
Lsi11g00146 | 1132 | SMART | B3_2 | 126 | 228 | IPR003340 | GO:0003677 | |
Lsi11g00146 | 1132 | Gene3D | - | 289 | 360 | - | - | |
Lsi11g00146 | 1132 | ProSiteProfiles | B3 DNA-binding domain profile. | 126 | 228 | IPR003340 | GO:0003677 | |
Lsi11g00146 | 1132 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 1 | 1097 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Lsi11g00146 | 1132 | SUPERFAMILY | DNA-binding pseudobarrel domain | 116 | 255 | IPR015300 | - | |
Lsi11g00146 | 1132 | Pfam | AUX/IAA family | 979 | 1068 | IPR033389 | - | |
Lsi11g00146 | 1132 | MobiDBLite | consensus disorder prediction | 698 | 736 | - | - | |
Lsi11g00146 | 1132 | MobiDBLite | consensus disorder prediction | 804 | 824 | - | - | |
Lsi11g00146 | 1132 | Pfam | B3 DNA binding domain | 126 | 227 | IPR003340 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi04g01726 | Lsi-Chr4:24579151 | Lsi11g00146 | Lsi-Chr11:1625449 | 2.11E-35 | dispersed | |
Lsi11g00146 | Lsi-Chr11:1625449 | Lsi11g00812 | Lsi-Chr11:9994471 | 0 | dispersed | |
Lsi11g00146 | Lsi-Chr11:1625449 | Lsi01g00116 | Lsi-Chr1:1225345 | 1.96E-27 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26129 | PF02309 | AUX_IAA | 1.70E-09 | CL0072 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g00146 | K14486 | - | jre:109021324 | 1439.86 |