Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00146 ATGAAAGCTCCTCCAAATGGGTTTCTGGCCAATTCTGGAGAAGGTGAAAGGAAGAATATTAATTCTGAGTTATGGCATGCTTGTGCTGGGCCTCTTGTTTCATTACCTCCAGTTGGAAGTCTTGTGGTTTACTTCCCTCAAGGCCACAGTGAACAAGTTGCAGCATCGATGAATAAGGAGACTGATTTCATTCCAAACTACCCTAACCTTCCTTCAAAGTTGATCTGCATGCTCCACAATGTCACATTACATGCTGATCCTGAAACAGATGAAGTGTATGCACAAATGACCCTTCAACCAGTGAATAAATATGAAAAAGAAGCTTTGTTGGCATCTGATATTGGCCTCAAACAAAGCAGGCAGCCTGCAGAATTCTTCTGCAAAACTCTAACAGCTAGTGACACCAGCACTCACGGTGGATTTTCTGTGCCTCGTCGAGCAGCTGAGAAGATTTTCCCCCCATTAGACTATTCGATGCAACCCCCTGCTCAGGAACTAGTGGCTAGAGATTTGCATGATAATTCATGGACATTCAGACATATTTACCGCGGCCAACCAAAACGACACCTTCTGACCACTGGTTGGAGTGTTTTTGTTAGCACAAAACGACTCTTTGCTGGAGACTCTGTGCTCTTTATAAGAGATGAAAAGTCACAGCTTCTCTTAGGCATAAGGCGTGCTAACAGGCAGCAGCCAGCTCTCTCTTCGTCAGTCATATCAAGTGATAGCATGCACATAGGAATTCTTGCTTCTGCTGCTCATGCTGCTGCAAATAACAGTCCTTTTACTATATTTTACAACCCTAGGGCCAGTCCTTCTGAATTTGTGATACCTTTGGCCAAGTATAATAAAGCAATGTATACGCAAGTTTCACTTGGCATGCGATTTAGGATGATGTTTGAAACTGAGGAGTCGGGAGTACGCAGATATATGGGTACGATTACTGGTATCAGCGACATGGATTCTGTACGATGGAAAAATTCACAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCGGCAGCTGGTGAACGACCTAACCGAGTTTCAATATGGGAAGTTGAGCCTGTTGTGACCCCCTTTTACATATGTCCGCCTCCATTCTTCAGACCCAAATTCCCTAAACAACCAGGGATGCCAGATGACGAATCTGATATTGAAAATGCGTTTAAGAGAGCCATGCCATGGTTTGGTGATGACTTTGGCATGAAAGATACACCAAGCTCAATCTTTCCTGGTTTAAGTTTAGTGCAGTGGATGAGCATGCAACATAATAATCAGTTCCCAGCAGCTCAATCTGGAATTTTGCCGTCCATGGTTGCTCCTAGTGCTCTGCATGGAACTCTTACTAATGATGACCCATCCAAATTATTGAGTTTTCAAGCACCAGTACTGTCTTCACCAAATCTCCAATTCAGCAAAGCAAATCAACAGAACCAAGTTGGCCAATTGCCTCCAACTGCGTGGTCTCAACAGCAGCAGCTGCAGCAAGTATTACAAGTTCCTGCAAGCCAACAGTTACAGCAGCAGCAGCAGTTGCCATCCCAGCAGGAACTACAGCAGCAGCAACAACAACTGCAGCAGCTGCCCCAGCAGCAGCAACTCCAGTCTCAACAGCCACGGCAACAGCAGACCTCGCAATCTGTTCTTTTGAACAACAGTGTAACTGCTGCTAACCATTTGCCAAATCCAAGTTTGCAACAACCACTTGTATACTCTCAGCTACAACAACAACAATTGCTTGCAGGCAATATTCAATCACATCAAACTAGCCAACCATCTAATAAGAACTCATTTCAGACTCCATCGTTATCGGAAGAAACACAGTTTCAGCCACAAATAGAGCAGCAACCTAGCCTTCTTGTGAGACACCAGCAGCCAACACAATTTCAACAGGCCCCACTACAATTATTGCAACAAAGTCTGTCTCAAAGAGCACAACAGCAGCCACAAGTTCAGCAATTTTCACAGCCAATCCCAACTGAGCAACAACTTCAATTGCAGCTGCTACAGAAGCTGCAGCAACAGCAGCAGCAGCAGCAACAACCATTGCTCTCGCCAGCTAGCCCACTATTACCACCTCAGCTGCTACAGCAGCAGCAGCATGTTCATCAGCAAAACCAGCAGTTACCACCATTGCCGTTGCCCAATCAGCAGCAGTTCAATAATAGTGGAGGAAGCTTCCAAACAGAAAAACTTAACAGCAATGGTTTCACAAATTTAGGTCTCATGCAGTCCCAGCAGGTTCCAATAACCCAATCCCGTAATCAATTCAAACCAACCACGGCAATTAGAGCATACTCTGGACTGACTGATGGAGATGCTCCGTCTTGTTCAACCTCACCTTCCACTAATAATTGCCCAGTTACAGTATCAAACCTGCTCAATAAGAACCAACAAGGAGCAGCCACACTTGGTGGAGATTCAGTAGTTGAGCCTGCAACTAACCCGACACAGGAGCTACAGAGCAAACCTGATTTGCGGATCAAACATGAGTTTCCTAACTCAAAAGGATTGGACCAACTAAAATATAAAGGCACTCTTCCTGATCAGCTAGAAGCGGCTTCTTCTGGGACATCATATTGTTTGGATGCTGGCACCATTCAGCAGACTCTCCCACTCCCTACATGTTTGGATAATGATGTACAATCACATCCACGTAACAATATCCCTTTCAGTAATAGTATTGATGGATTGCCACCAGATACCTTATTGTCAAGGGGATATGACTCTCAAAAAGATCTTCAGAACTTACTTTCTAACTATGGTGGGGGTGTGCCAAGAGATATTGAAACAGAGTTGTCCACTGCTGCAATAAGCTCTCAGTCCTTTGGGGTTCCAAACCTGCCTTTCAAGCCTGGCTGCTCAAATGATGTCAACGTAAATGAAGCTGGAGCTTTGAGTAGTGGATTGTGGGCAAACCACAGTCAACCATCTAAAACTGCTAAAATTCTGAAGGTTCAAAAGCGTGGATCAGTGGGTAGATGTATCGATGTCAATCGCTACAAAGGATATGATGAGCTTAGGCATGATCTTGCCCGCATGTTCGGCATTGAAGGGCAGTTAGAAGATCCTCAACGAACTGATTGGAAACTTGTTTATGTGGACCATGAAAATGATATACTTCTAGTTGGTGATGATCCTTGGGAGGAGTTTGTGAGCTGTGTTCAGAGCATAAAGATCCTATCATCCGCTGAAGTACAGCAGATGAGTTTGGATGGGAATTTGGGTCACATTCAGACTCCCAATCAAGCTTGCAGTGGGACGGATAGTGGAAATGCATGGAGAGGGCAGTCCGATCAGCTCATGAGGCAAGGTCTGCAGGAAATAGTAACTCGGCAAATGTCCGATACTGCAAATATGGAGACGGACTTGCCAACCAATTGCAATTTCCAGTAG 3399 44.87 MKAPPNGFLANSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLICMLHNVTLHADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQSRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVARDLHDNSWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALSSSVISSDSMHIGILASAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDMDSVRWKNSQWRNLQVGWDESAAGERPNRVSIWEVEPVVTPFYICPPPFFRPKFPKQPGMPDDESDIENAFKRAMPWFGDDFGMKDTPSSIFPGLSLVQWMSMQHNNQFPAAQSGILPSMVAPSALHGTLTNDDPSKLLSFQAPVLSSPNLQFSKANQQNQVGQLPPTAWSQQQQLQQVLQVPASQQLQQQQQLPSQQELQQQQQQLQQLPQQQQLQSQQPRQQQTSQSVLLNNSVTAANHLPNPSLQQPLVYSQLQQQQLLAGNIQSHQTSQPSNKNSFQTPSLSEETQFQPQIEQQPSLLVRHQQPTQFQQAPLQLLQQSLSQRAQQQPQVQQFSQPIPTEQQLQLQLLQKLQQQQQQQQQPLLSPASPLLPPQLLQQQQHVHQQNQQLPPLPLPNQQQFNNSGGSFQTEKLNSNGFTNLGLMQSQQVPITQSRNQFKPTTAIRAYSGLTDGDAPSCSTSPSTNNCPVTVSNLLNKNQQGAATLGGDSVVEPATNPTQELQSKPDLRIKHEFPNSKGLDQLKYKGTLPDQLEAASSGTSYCLDAGTIQQTLPLPTCLDNDVQSHPRNNIPFSNSIDGLPPDTLLSRGYDSQKDLQNLLSNYGGGVPRDIETELSTAAISSQSFGVPNLPFKPGCSNDVNVNEAGALSSGLWANHSQPSKTAKILKVQKRGSVGRCIDVNRYKGYDELRHDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGNLGHIQTPNQACSGTDSGNAWRGQSDQLMRQGLQEIVTRQMSDTANMETDLPTNCNFQ 1132
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1625449 1637495 + Lsi11G001460.1 Lsi11g00146 673313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00146 1132 CDD B3_DNA 125 226 IPR003340 GO:0003677
Lsi11g00146 1132 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lsi11g00146 1132 Gene3D - 978 1071 - -
Lsi11g00146 1132 PANTHER AUXIN RESPONSE FACTOR 19 1 1097 - -
Lsi11g00146 1132 SUPERFAMILY CAD & PB1 domains 979 1060 - -
Lsi11g00146 1132 MobiDBLite consensus disorder prediction 585 614 - -
Lsi11g00146 1132 Gene3D - 124 227 IPR015300 -
Lsi11g00146 1132 MobiDBLite consensus disorder prediction 804 823 - -
Lsi11g00146 1132 ProSiteProfiles PB1 domain profile. 982 1075 IPR000270 GO:0005515
Lsi11g00146 1132 SMART B3_2 126 228 IPR003340 GO:0003677
Lsi11g00146 1132 Gene3D - 289 360 - -
Lsi11g00146 1132 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Lsi11g00146 1132 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 1097 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lsi11g00146 1132 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Lsi11g00146 1132 Pfam AUX/IAA family 979 1068 IPR033389 -
Lsi11g00146 1132 MobiDBLite consensus disorder prediction 698 736 - -
Lsi11g00146 1132 MobiDBLite consensus disorder prediction 804 824 - -
Lsi11g00146 1132 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01726 Lsi-Chr4:24579151 Lsi11g00146 Lsi-Chr11:1625449 2.11E-35 dispersed
Lsi11g00146 Lsi-Chr11:1625449 Lsi11g00812 Lsi-Chr11:9994471 0 dispersed
Lsi11g00146 Lsi-Chr11:1625449 Lsi01g00116 Lsi-Chr1:1225345 1.96E-27 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26129 PF02309 AUX_IAA 1.70E-09 CL0072 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00146 K14486 - jre:109021324 1439.86