Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00148 ATGGGCGCTCTTGGAATTTTGTTCTTCATCGTCCTTCTCGCTGTTCTTCCTTTCTCTTCTCCCTTGTCCGAGAACGAAGCTCTGTTAAAGCTCAAACAATCCTTCACCCATTCCGATTCCTTGAATTCCTGGAACCCTAACTCAGTCCCCTGTTCCGCTCGATGGACCGGCATTATCTGTAACAGAGGCGTTATCACCGGCCTACATCTCTCCGGCCTCCAACTCTCCGGCAAGATCGACGTCGAAGCTCTCCTTCAACTTCCAAGCCTTCGAACCATTAGCTTCGTCAACAATAAATTCTCCGGTCCAATTCCGGAATTCAACAAAATCGGAGTTCTCAAGGCTCTTCTCTTAACTGGAAACCAATTCTCCGGTGCTATCCCTAACGACTTCTTTTCCTCTTTGACTTCCTTAAAAAAGGTCTGGCTCTCTTCAAACAATTTCTCCGGTAACATTCCAAATTCTCTAGCTCAACTCTCTCATTTAATCGAACTCCATCTCGAAAGCAATCAATTCTCAGGGCCAATCCCAAATCTCAAATACGCTTCAATTATAACCTCCCTCGATCTCTCCAACAACAAACTCGAAGGTCAAATCCCCGAAACCCTATCGAAATTCGACGCAAAGGCATTCGTTGGAAACGAAGGCCTTTGCGGGAATCCACTCCCTAAATCTTGCGGCGAAAACGCTGGTCGGATTTCTGAAGAGAAACCCCTTTCTTCTTCAACACCTCCTGGGGAATCGCAAGGCAATATTTCGAAATTGATTGTAGCATCATTAATAGCGGTGGTTGTATTTCTGATGGTGTTTATATTTCTGAGTGCTTCGAAGCGTAGAGAGGATGAATTCAGTGTATTGGGAAGAGAACAGATGGAGGAAGTTGTGGAGGTTCATGTACCGAGTTCCGGCGGGCATGACAAGCAGTCAAGTAGAAGAGGTGGGGATTCAAAGAGAGGATCGCAACAGGGGAAAGCGGGGATGAGCGATCTTGTGGTGGTTAATGAAGAGAAAGGTACGTTTGGTTTGGCGGATTTGATGAAGGCTGCGGCGGAGGTTTTAGGGAACGGTGGGTTGGGCTCTGCTTATAAGGCGGTTATGTCGAATGGGTTGTCGGTGGTGGTAAAGAGAATGAGAGAGATGAACAAATTAGGGAAAGATGGGTTTGATGCGGAGATGAGACGCCTTGGAAGTTTGCGACATCAGAATATATTAACGCCTTTGGCTTATCATTACAGGAGAGAGGAGAAACTGCTCGTGTCTGAGTACATTCCAAAGGGCAGCCTCTTGTATGTGTTGCATGAATTCGCAACTTATGATCTGCCACATGGGAATTTAAAATCCAGCAACGTTCTTTTATGCGACAACTATGAACCACTTCTGAGCGACTACGCATTCCATCCCCTTATCAATCCCAACAACGCGACTCAAGCAATGTTCGCCTACAAATCCCCTGAGTACGCCCACCACCAAGAAGTCTCTCCCAAATCTGATGTCTATTGTCTTGGCATTATCATTCTTGAAATCATGACCAGTAAATTCCCTTCTCAATATCTTACCAATGGCAAAGGTGGTACTGATGTTGTGCAGTGGGTCTCCTCTGCTGTTTCTGAGAAGAGGGAGGCTGAACTTATCGACCCTGAGATCGCTAACGACGCCGACGCACTCGATCGTATGGTCCAACTCCTCATAATCGGTGCCGATTGCACCCATAATAATCCTCAGCAACGGCCAGATATGAGGGAAGCTATTAGGAGAATAGAAGAGATATGA 1770 46.33 MGALGILFFIVLLAVLPFSSPLSENEALLKLKQSFTHSDSLNSWNPNSVPCSARWTGIICNRGVITGLHLSGLQLSGKIDVEALLQLPSLRTISFVNNKFSGPIPEFNKIGVLKALLLTGNQFSGAIPNDFFSSLTSLKKVWLSSNNFSGNIPNSLAQLSHLIELHLESNQFSGPIPNLKYASIITSLDLSNNKLEGQIPETLSKFDAKAFVGNEGLCGNPLPKSCGENAGRISEEKPLSSSTPPGESQGNISKLIVASLIAVVVFLMVFIFLSASKRREDEFSVLGREQMEEVVEVHVPSSGGHDKQSSRRGGDSKRGSQQGKAGMSDLVVVNEEKGTFGLADLMKAAAEVLGNGGLGSAYKAVMSNGLSVVVKRMREMNKLGKDGFDAEMRRLGSLRHQNILTPLAYHYRREEKLLVSEYIPKGSLLYVLHEFATYDLPHGNLKSSNVLLCDNYEPLLSDYAFHPLINPNNATQAMFAYKSPEYAHHQEVSPKSDVYCLGIIILEIMTSKFPSQYLTNGKGGTDVVQWVSSAVSEKREAELIDPEIANDADALDRMVQLLIIGADCTHNNPQQRPDMREAIRRIEEI 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1652207 1655505 + Lsi11G001480.1 Lsi11g00148 673315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00148 589 Pfam Leucine rich repeat N-terminal domain 23 61 IPR013210 -
Lsi11g00148 589 Pfam Protein kinase domain 440 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00148 589 Pfam Protein tyrosine and serine/threonine kinase 351 434 IPR001245 GO:0004672|GO:0006468
Lsi11g00148 589 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 6 433 - -
Lsi11g00148 589 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 434 589 - -
Lsi11g00148 589 SUPERFAMILY L domain-like 22 206 - -
Lsi11g00148 589 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 6 433 - -
Lsi11g00148 589 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 434 589 - -
Lsi11g00148 589 Gene3D Ribonuclease Inhibitor 22 181 IPR032675 -
Lsi11g00148 589 MobiDBLite consensus disorder prediction 295 328 - -
Lsi11g00148 589 Pfam Leucine Rich Repeat 186 206 IPR001611 GO:0005515
Lsi11g00148 589 Gene3D Transferase(Phosphotransferase) domain 1 426 589 - -
Lsi11g00148 589 Gene3D Phosphorylase Kinase; domain 1 315 422 - -
Lsi11g00148 589 Gene3D Ribonuclease Inhibitor 182 229 IPR032675 -
Lsi11g00148 589 SUPERFAMILY Protein kinase-like (PK-like) 351 585 IPR011009 -
Lsi11g00148 589 ProSiteProfiles Protein kinase domain profile. 347 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00148 589 MobiDBLite consensus disorder prediction 229 248 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01116 Lsi-Chr8:19798175 Lsi11g00148 Lsi-Chr11:1652207 6.74E-118 dispersed
Lsi11g00148 Lsi-Chr11:1652207 Lsi06g00909 Lsi-Chr6:18797364 2.14E-102 dispersed
Lsi11g00148 Lsi-Chr11:1652207 Lsi04g02208 Lsi-Chr4:29120184 5.54E-130 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84008 PF00069 Pkinase 6.30E-10 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00148 - - cmo:103498999 1018.84