Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00157 ATGGCGGTGAAGAAAATGAAGTGGAGATCCATTTTCTCTAGCTGCTGCGAGGTTGAGTCTCAGTCGTCGGAGATGATGAAAGTAGTGGCGGCGAATAAGCCGAGTTCCTTCCAAAGGATTTCGAAACTAGATTTGAGTAACCCTAATTCCACTCTCTCTGAAGATCTCTCCATCTCTCTCGCCGGATCTGACATTCACGCCTTTACTTTCGCTGAATTGAAGCTCATCTCTCAGACCTTTTCTTCCTCAAACTTCCTTGGAGAAGGTGGATTCGGCCCTGTCTACAAAGGATTCCTCGATGACAATCTCAGGCCTGGCTTGTCTCCTCAGCCTGTTGCTATTAAACTCCTCGATTTGGATGGAACACAAGGCCACAGGGAATGGCTGACGGAGGTGATTTTTCTAGGGCAGCTTAAGCACGCCCATCTTGTTAAGCTGATTGGATATTGCTGCGAAGACGAACATAGGATGCTTGTGTATGAGTATATGCCCAGAGGAAGCTTGGAGAATCAACTTTTCAAAAAATATTCAATCCCATTGCCATGGTCGACGAGAATGAAGATCGCTCTTGGAGCTGCCAAGGGTCTGGCCTTCCTCCACGAAGCAGATAAACCAGTTATTTACCGTGATTTCAAAGCCTCCAACATACTGCTCGACTCTCTATCTGATTTCGGGCTGGCGAAAGATGGTCCAGAAGGAGACAACACGCACGTCTCGACCCGAGTAATGGGGACGCATGGATATGCTGCGCCGGAGTATATAATGACGGGGCATTTGACGGCGATGAGTGATGTATATAGCTTCGGAGTAGTGCTTTTGGAGCTGTTAACAGGGCGGAGGTCGGTGGAGAAGAGCAGCCGTAAGAGGCAGCAGAACTTGGCAGAATGGGCGAGGCCATTGCTGAATGATCAAAGGAAGCTAAGCCGTATAATAGACCCAAGACTTGAAGGCCAATACTCGGAAATGGGAGCTCAGAAAGCAGCCTCATTGGCCTACCAGTGCTTGAGCCACCGCCCAAAGCAGAGGCCCACCATGAGCGCCGTCGTTAAGGTATTAGAGCCACTCAAGGATTTCGATGACATTTCTTCAGGCACATTCGTTTACACGGTTCTAGATCAGCAGCCCAATTCAATTCAAATCTGA 1143 48.64 MAVKKMKWRSIFSSCCEVESQSSEMMKVVAANKPSSFQRISKLDLSNPNSTLSEDLSISLAGSDIHAFTFAELKLISQTFSSSNFLGEGGFGPVYKGFLDDNLRPGLSPQPVAIKLLDLDGTQGHREWLTEVIFLGQLKHAHLVKLIGYCCEDEHRMLVYEYMPRGSLENQLFKKYSIPLPWSTRMKIALGAAKGLAFLHEADKPVIYRDFKASNILLDSLSDFGLAKDGPEGDNTHVSTRVMGTHGYAAPEYIMTGHLTAMSDVYSFGVVLLELLTGRRSVEKSSRKRQQNLAEWARPLLNDQRKLSRIIDPRLEGQYSEMGAQKAASLAYQCLSHRPKQRPTMSAVVKVLEPLKDFDDISSGTFVYTVLDQQPNSIQI 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1698623 1700507 - Lsi11G001570.1 Lsi11g00157 673324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00157 380 PANTHER OS01G0588500 PROTEIN-RELATED 26 373 - -
Lsi11g00157 380 ProSiteProfiles Protein kinase domain profile. 80 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00157 380 SUPERFAMILY Protein kinase-like (PK-like) 56 353 IPR011009 -
Lsi11g00157 380 CDD STKc_IRAK 86 355 - -
Lsi11g00157 380 Gene3D Phosphorylase Kinase; domain 1 44 162 - -
Lsi11g00157 380 Gene3D Transferase(Phosphotransferase) domain 1 163 365 - -
Lsi11g00157 380 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 26 373 - -
Lsi11g00157 380 Pfam Protein tyrosine and serine/threonine kinase 84 352 IPR001245 GO:0004672|GO:0006468
Lsi11g00157 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi06g00338 Lsi11g00157 CCT
Lsi06g00338 Lsi11g00157 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01378 Lsi-Chr4:21580363 Lsi11g00157 Lsi-Chr11:1698623 1.20E-46 dispersed
Lsi07g00761 Lsi-Chr7:8296963 Lsi11g00157 Lsi-Chr11:1698623 1.41E-123 dispersed
Lsi11g00157 Lsi-Chr11:1698623 Lsi04g00457 Lsi-Chr4:4337978 3.43E-139 dispersed
Lsi06g00388 Lsi-Chr6:4273350 Lsi11g00157 Lsi-Chr11:1698623 5.40E-142 transposed
Lsi03g02296 Lsi-Chr3:33803089 Lsi11g00157 Lsi-Chr11:1698623 1.16E-50 transposed
Lsi11g00157 Lsi-Chr11:1698623 Lsi02g02895 Lsi-Chr2:35180165 1.62E-121 wgd
Lsi11g00157 Lsi-Chr11:1698623 Lsi06g00338 Lsi-Chr6:3749093 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84009 PF07714 PK_Tyr_Ser-Thr 1.50E-43 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00157 - - csv:101209441 714.146