Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g00160 | ATGGCCGAGGAGGAGAGGAGAAGGGTTTTAGGGATGGAAAAGAACGAAGAGACGGGGAGCTCTGGATGGGGTGCTTCACTTTTTCTCCAGACTACTGAAGATGTTGCAAGAGCTGTGGCTGCTGCAGCTGCTGCCGCAACCGATGCTCGCTCTCCTCGTCCTTCTGTTATATATTCTTCAAAAGACGATGAGGGCGGTAGTCCACTTCAGAGACTGCAGCGTCAAGTTAATAAAGTGATTAAAGGATTCTCTAGTCCTCCTCAAGTCAAAACTGCAGGAACTTACAATCCTGAAGTTCTCACTACCCAAAAGCGTCAGTGGGCGAATTTCCAGTTGCAATACTTGGACCATCGATCTCAGAAGGAGCCAACTAGGATTTTTGAGAGCATGGTTGTTGTTGGCCTTCATCCTAATTGTGATATTCAGGCACTTCAGAGGCAGTATGCTGCAAAGAAGTCAGAAGGTTCCGGGAGACTGCGAACTGCTCTTAATAATAGTCAGAGCCAATCTCGGGTGGAACCTCATCTTGAACCACAGGTTTTATTTGTTTACCCTCCAGAGAAACAGTTACCGCTCAAGTACAAGGACCTTCTTTCATTCTGCTTTCCAGGAGGTGTGGAGGTTCACGCTGTTGAGAAAACTCCTTCCATGAGTGAGTTGAATGAGATTCTTCTTGGGCAGGAACACTTTAAGCAAAGTGATCTCTCGTTTGTATTCCGCTTACAGGTTGCTGATGATTCGACATTGTACGGATGCTGTGTTTTAGTTGAAGAATTAGTGCAGAAACCCTCTGGGTTGCTTTCTGTTTCTGAAAAACCATCTTCCTACTCATCCTTGAGCCGTTCTATACTAACCACACGCAGATGCTACTGCATCCTATCTCGGTTGCCATTCTTCGAATTACATTTCGGTGTGTTGAATAGAGTGGAATTTGTAATGCTTCACGGGGAGCACAGATTAGAGAGATTGGCGTTTTCATATGCTAGGAAATTTGCCACCATCTTCACCGAAGAAAGGCTGCAAAGATTAACAAAAGGTATTGGTGTTTTGAATTTGGACTCCATAGAGAATTTGAGAAATGAAGAAGATTTGGTGGAAGACATAGGTTGCAGGACGTTAGATCAGAGTGCAGCTGAAGACGTGCAGGGAGAAGAGGAATATTCTCAAAGAATGGGTGATGAAAATCATGTTGAGCATCAAATGCTCGATGGAAATTTTCAATGTCTGAAAAAGGGTGTTAGTGATGATATAGTTGCCACACTCGATCCAGAACCAGAGGTAGTTACAGCCGAAATAGAATCTGTTACTGTACATAAGGAAAATCATGATATGGATGTTGATGATTTTACAAGAAACAAGCAGGCAATTGATAGACGTTTACCGAATGCTGTTCTACCTCTCCTTCGTTATTATCAATATGAAAGCTCTGAATCGTCCTCGAGTTTTCAGGGGTCTCCGAGTGAAGACAGAAATTTCAGAAGTGATGCTGATGACACAGAGACAGAGGAGGCATCTTTCTCTGGCCAGGATGATTCCACGGACCTACTTGACATTCTTGAATGGGCCAAGGAAAATAAGAATGGATCATTACAAATCATATGCGAGTATTACCAGTTGCATTACCCTGCTAGGGGCTGTTCTGTTAAGTTTCATCCTTTGGAGCACCTGCATCCCTTGGAGTATTATAGATCAGGCAAAACAGTTCTACATGTTGCTGGGTCGACCATTGATCCAAGATCATGCAGTACAAGTCTTGAATTAGCAGAGGCACAAGGTGCTCTCCTGGTAGAGGAGGAAGCAAATGCCTTGTCAATATGGACTGTTGCAAGCATTTGTGGTTCTTTACGCCTTGAGCATATTTTATCAATTTTAGCTGGAGCGCTGCTGGAGAAGCAGATTGTGATCGTTTGTTCCAATCTGGGTATCCTATCAGCTTCAGTTTTATCAATTATCCCTATGATTCGTCCCTACCAGTGGCAAAGCTTGCTGATGCCAGTTGGTGTGAAAAATAAAACCAGTGAAGTGCAGTCAAAGTTAACCAATGCCGTTTTGGTTGATGTGAACAAGAACCAGGTCAAGGCCCCAACAATACCTCAGTTGCCAAAACAAAAGGAGTTATTCTCATCATTAAGACCATATCACGCGGAGCTAGTTGGAGAGAGTTTTTTGGGGAGAAAGAGGCCAGTGCATGAATGCACTGATGTGCAGGTTGAAGCCGCCAAGGGTTTTCTAAAAGTGCTAAGATTATACTTGGACGCTCTCTGCTCTAACCTCCGTTCACATACAATTACTAATGTACAATCGAATGATGATAAGGTATCATTACTCTTGAAGGAGAGCTTCATTGAGTCGTTCCCAAGCCCAATGAGCTCAAGAAACAGATTTCCTTTCACTGCATCTCAATGGCAAGAGCTGGAACATCAAGCCCTTATCTTCAAGTACATGGTCTCCGGCATCCCTGTCCCTCCTGATCTGCTTTACACCATTAAAAGAACTTCTTTGTCTTTGGACACTCCTTTCATTTCCAGGCTCTTTCCCCACCAATATCCAGATGTTGGATGGAACTATGTGCAAATGGGTTCAGGGAGGAAAATCGATCCAGAGCCTGGAAGGTGTAGAAGAACAGATGGCAAAAAATGGAGATGCTCCAAAGAAGCATACCCAGATTCTAAATATTGTGAGAGACATATGCATAGAGGTAAAAATCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACAACAATAACAACTGCTCTAAACTCTAATCCATCATCATCCATTACCCATAACTCTACTCATTCCTTTGCTTCACTCACCAACTCTGAAACTCATCCCCATCCCCACCCTTTTCTCTATCAACATCCTTCTGCTTCTTCTGCTCATCCATCCTTACTTCCAGATTACAGAAGAAACAGGTATGTTTATGGGGGGAAGGAAGAAGATGTTGATGAACAACCCTTTGTGAGGGAACAACATTCAGGGAACATGAGAGGCTTCTCTGCTTCATCTATGGAAGATTCCTGGCAGCTAACTCCTTTGACAATGAGTTGCTCTTCCTCATCCTCCAGATACAAGAATGGCTCTGGTTTAGAAGGTGACTACTCTTCTTACTTGCAGCTGCAGAGCTTTGGAAAATATAATGAGATGCAGAGTAAGATGGAAAGAGAGGAACCACAGAAGATTATGCATCATTTTTTTGATGAATGGTCTGCTAAAGACAGAGAGTCTTGGGTTGATTTGGATGATAAGTCATCCAATAATACTGGCTCAGTTTCTGCAACTAGGCTCTCAATGTCTATTCCTAACCATGACTTCTCCTCTATCTTCACTTCCAATAAGCATAATGAAAACTGA | 3357 | 43.07 | MAEEERRRVLGMEKNEETGSSGWGASLFLQTTEDVARAVAAAAAAATDARSPRPSVIYSSKDDEGGSPLQRLQRQVNKVIKGFSSPPQVKTAGTYNPEVLTTQKRQWANFQLQYLDHRSQKEPTRIFESMVVVGLHPNCDIQALQRQYAAKKSEGSGRLRTALNNSQSQSRVEPHLEPQVLFVYPPEKQLPLKYKDLLSFCFPGGVEVHAVEKTPSMSELNEILLGQEHFKQSDLSFVFRLQVADDSTLYGCCVLVEELVQKPSGLLSVSEKPSSYSSLSRSILTTRRCYCILSRLPFFELHFGVLNRVEFVMLHGEHRLERLAFSYARKFATIFTEERLQRLTKGIGVLNLDSIENLRNEEDLVEDIGCRTLDQSAAEDVQGEEEYSQRMGDENHVEHQMLDGNFQCLKKGVSDDIVATLDPEPEVVTAEIESVTVHKENHDMDVDDFTRNKQAIDRRLPNAVLPLLRYYQYESSESSSSFQGSPSEDRNFRSDADDTETEEASFSGQDDSTDLLDILEWAKENKNGSLQIICEYYQLHYPARGCSVKFHPLEHLHPLEYYRSGKTVLHVAGSTIDPRSCSTSLELAEAQGALLVEEEANALSIWTVASICGSLRLEHILSILAGALLEKQIVIVCSNLGILSASVLSIIPMIRPYQWQSLLMPVGVKNKTSEVQSKLTNAVLVDVNKNQVKAPTIPQLPKQKELFSSLRPYHAELVGESFLGRKRPVHECTDVQVEAAKGFLKVLRLYLDALCSNLRSHTITNVQSNDDKVSLLLKESFIESFPSPMSSRNRFPFTASQWQELEHQALIFKYMVSGIPVPPDLLYTIKRTSLSLDTPFISRLFPHQYPDVGWNYVQMGSGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTTITTALNSNPSSSITHNSTHSFASLTNSETHPHPHPFLYQHPSASSAHPSLLPDYRRNRYVYGGKEEDVDEQPFVREQHSGNMRGFSASSMEDSWQLTPLTMSCSSSSSRYKNGSGLEGDYSSYLQLQSFGKYNEMQSKMEREEPQKIMHHFFDEWSAKDRESWVDLDDKSSNNTGSVSATRLSMSIPNHDFSSIFTSNKHNEN | 1118 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1725553 | 1737574 | + | Lsi11G001600.1 | Lsi11g00160 | 673327 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g00160 | 1118 | MobiDBLite | consensus disorder prediction | 43 | 68 | - | - | |
Lsi11g00160 | 1118 | PANTHER | DENN (AEX-3) DOMAIN-CONTAINING PROTEIN | 333 | 787 | - | - | |
Lsi11g00160 | 1118 | SMART | DENN_cls | 285 | 690 | IPR001194 | - | |
Lsi11g00160 | 1118 | ProSiteProfiles | WRC domain profile. | 866 | 910 | IPR014977 | - | |
Lsi11g00160 | 1118 | SMART | QLQ_2 | 795 | 831 | IPR014978 | GO:0005524|GO:0005634|GO:0006355 | |
Lsi11g00160 | 1118 | MobiDBLite | consensus disorder prediction | 477 | 510 | - | - | |
Lsi11g00160 | 1118 | MobiDBLite | consensus disorder prediction | 919 | 943 | - | - | |
Lsi11g00160 | 1118 | Gene3D | - | 604 | 751 | IPR043153 | - | |
Lsi11g00160 | 1118 | PANTHER | SUPPRESSION OF TUMORIGENICITY 5 ST5 | 333 | 787 | - | - | |
Lsi11g00160 | 1118 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Lsi11g00160 | 1118 | ProSiteProfiles | QLQ domain profile. | 796 | 831 | IPR014978 | GO:0005524|GO:0005634|GO:0006355 | |
Lsi11g00160 | 1118 | PANTHER | DENN (AEX-3) DOMAIN-CONTAINING PROTEIN | 12 | 324 | - | - | |
Lsi11g00160 | 1118 | Pfam | QLQ | 796 | 829 | IPR014978 | GO:0005524|GO:0005634|GO:0006355 | |
Lsi11g00160 | 1118 | Pfam | WRC | 867 | 909 | IPR014977 | - | |
Lsi11g00160 | 1118 | Pfam | DENN (AEX-3) domain | 607 | 666 | IPR001194 | - | |
Lsi11g00160 | 1118 | Gene3D | - | 115 | 331 | - | - | |
Lsi11g00160 | 1118 | Pfam | uDENN domain | 178 | 255 | IPR005113 | - | |
Lsi11g00160 | 1118 | PANTHER | SUPPRESSION OF TUMORIGENICITY 5 ST5 | 12 | 324 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi07g00619 | Lsi-Chr7:6656173 | Lsi11g00160 | Lsi-Chr11:1725553 | 5.43E-64 | dispersed | |
Lsi10g00222 | Lsi-Chr10:3565565 | Lsi11g00160 | Lsi-Chr11:1725553 | 7.36E-57 | dispersed | |
Lsi09g01804 | Lsi-Chr9:26789644 | Lsi11g00160 | Lsi-Chr11:1725553 | 1.02E-08 | transposed | |
Lsi11g00160 | Lsi-Chr11:1725553 | Lsi06g00321 | Lsi-Chr6:3633517 | 5.27E-95 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26130 | PF02141 | DENN | 2.50E-07 | CL0330 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g00160 | - | - | csv:101208952 | 1341.25 |