Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00160 ATGGCCGAGGAGGAGAGGAGAAGGGTTTTAGGGATGGAAAAGAACGAAGAGACGGGGAGCTCTGGATGGGGTGCTTCACTTTTTCTCCAGACTACTGAAGATGTTGCAAGAGCTGTGGCTGCTGCAGCTGCTGCCGCAACCGATGCTCGCTCTCCTCGTCCTTCTGTTATATATTCTTCAAAAGACGATGAGGGCGGTAGTCCACTTCAGAGACTGCAGCGTCAAGTTAATAAAGTGATTAAAGGATTCTCTAGTCCTCCTCAAGTCAAAACTGCAGGAACTTACAATCCTGAAGTTCTCACTACCCAAAAGCGTCAGTGGGCGAATTTCCAGTTGCAATACTTGGACCATCGATCTCAGAAGGAGCCAACTAGGATTTTTGAGAGCATGGTTGTTGTTGGCCTTCATCCTAATTGTGATATTCAGGCACTTCAGAGGCAGTATGCTGCAAAGAAGTCAGAAGGTTCCGGGAGACTGCGAACTGCTCTTAATAATAGTCAGAGCCAATCTCGGGTGGAACCTCATCTTGAACCACAGGTTTTATTTGTTTACCCTCCAGAGAAACAGTTACCGCTCAAGTACAAGGACCTTCTTTCATTCTGCTTTCCAGGAGGTGTGGAGGTTCACGCTGTTGAGAAAACTCCTTCCATGAGTGAGTTGAATGAGATTCTTCTTGGGCAGGAACACTTTAAGCAAAGTGATCTCTCGTTTGTATTCCGCTTACAGGTTGCTGATGATTCGACATTGTACGGATGCTGTGTTTTAGTTGAAGAATTAGTGCAGAAACCCTCTGGGTTGCTTTCTGTTTCTGAAAAACCATCTTCCTACTCATCCTTGAGCCGTTCTATACTAACCACACGCAGATGCTACTGCATCCTATCTCGGTTGCCATTCTTCGAATTACATTTCGGTGTGTTGAATAGAGTGGAATTTGTAATGCTTCACGGGGAGCACAGATTAGAGAGATTGGCGTTTTCATATGCTAGGAAATTTGCCACCATCTTCACCGAAGAAAGGCTGCAAAGATTAACAAAAGGTATTGGTGTTTTGAATTTGGACTCCATAGAGAATTTGAGAAATGAAGAAGATTTGGTGGAAGACATAGGTTGCAGGACGTTAGATCAGAGTGCAGCTGAAGACGTGCAGGGAGAAGAGGAATATTCTCAAAGAATGGGTGATGAAAATCATGTTGAGCATCAAATGCTCGATGGAAATTTTCAATGTCTGAAAAAGGGTGTTAGTGATGATATAGTTGCCACACTCGATCCAGAACCAGAGGTAGTTACAGCCGAAATAGAATCTGTTACTGTACATAAGGAAAATCATGATATGGATGTTGATGATTTTACAAGAAACAAGCAGGCAATTGATAGACGTTTACCGAATGCTGTTCTACCTCTCCTTCGTTATTATCAATATGAAAGCTCTGAATCGTCCTCGAGTTTTCAGGGGTCTCCGAGTGAAGACAGAAATTTCAGAAGTGATGCTGATGACACAGAGACAGAGGAGGCATCTTTCTCTGGCCAGGATGATTCCACGGACCTACTTGACATTCTTGAATGGGCCAAGGAAAATAAGAATGGATCATTACAAATCATATGCGAGTATTACCAGTTGCATTACCCTGCTAGGGGCTGTTCTGTTAAGTTTCATCCTTTGGAGCACCTGCATCCCTTGGAGTATTATAGATCAGGCAAAACAGTTCTACATGTTGCTGGGTCGACCATTGATCCAAGATCATGCAGTACAAGTCTTGAATTAGCAGAGGCACAAGGTGCTCTCCTGGTAGAGGAGGAAGCAAATGCCTTGTCAATATGGACTGTTGCAAGCATTTGTGGTTCTTTACGCCTTGAGCATATTTTATCAATTTTAGCTGGAGCGCTGCTGGAGAAGCAGATTGTGATCGTTTGTTCCAATCTGGGTATCCTATCAGCTTCAGTTTTATCAATTATCCCTATGATTCGTCCCTACCAGTGGCAAAGCTTGCTGATGCCAGTTGGTGTGAAAAATAAAACCAGTGAAGTGCAGTCAAAGTTAACCAATGCCGTTTTGGTTGATGTGAACAAGAACCAGGTCAAGGCCCCAACAATACCTCAGTTGCCAAAACAAAAGGAGTTATTCTCATCATTAAGACCATATCACGCGGAGCTAGTTGGAGAGAGTTTTTTGGGGAGAAAGAGGCCAGTGCATGAATGCACTGATGTGCAGGTTGAAGCCGCCAAGGGTTTTCTAAAAGTGCTAAGATTATACTTGGACGCTCTCTGCTCTAACCTCCGTTCACATACAATTACTAATGTACAATCGAATGATGATAAGGTATCATTACTCTTGAAGGAGAGCTTCATTGAGTCGTTCCCAAGCCCAATGAGCTCAAGAAACAGATTTCCTTTCACTGCATCTCAATGGCAAGAGCTGGAACATCAAGCCCTTATCTTCAAGTACATGGTCTCCGGCATCCCTGTCCCTCCTGATCTGCTTTACACCATTAAAAGAACTTCTTTGTCTTTGGACACTCCTTTCATTTCCAGGCTCTTTCCCCACCAATATCCAGATGTTGGATGGAACTATGTGCAAATGGGTTCAGGGAGGAAAATCGATCCAGAGCCTGGAAGGTGTAGAAGAACAGATGGCAAAAAATGGAGATGCTCCAAAGAAGCATACCCAGATTCTAAATATTGTGAGAGACATATGCATAGAGGTAAAAATCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACAACAATAACAACTGCTCTAAACTCTAATCCATCATCATCCATTACCCATAACTCTACTCATTCCTTTGCTTCACTCACCAACTCTGAAACTCATCCCCATCCCCACCCTTTTCTCTATCAACATCCTTCTGCTTCTTCTGCTCATCCATCCTTACTTCCAGATTACAGAAGAAACAGGTATGTTTATGGGGGGAAGGAAGAAGATGTTGATGAACAACCCTTTGTGAGGGAACAACATTCAGGGAACATGAGAGGCTTCTCTGCTTCATCTATGGAAGATTCCTGGCAGCTAACTCCTTTGACAATGAGTTGCTCTTCCTCATCCTCCAGATACAAGAATGGCTCTGGTTTAGAAGGTGACTACTCTTCTTACTTGCAGCTGCAGAGCTTTGGAAAATATAATGAGATGCAGAGTAAGATGGAAAGAGAGGAACCACAGAAGATTATGCATCATTTTTTTGATGAATGGTCTGCTAAAGACAGAGAGTCTTGGGTTGATTTGGATGATAAGTCATCCAATAATACTGGCTCAGTTTCTGCAACTAGGCTCTCAATGTCTATTCCTAACCATGACTTCTCCTCTATCTTCACTTCCAATAAGCATAATGAAAACTGA 3357 43.07 MAEEERRRVLGMEKNEETGSSGWGASLFLQTTEDVARAVAAAAAAATDARSPRPSVIYSSKDDEGGSPLQRLQRQVNKVIKGFSSPPQVKTAGTYNPEVLTTQKRQWANFQLQYLDHRSQKEPTRIFESMVVVGLHPNCDIQALQRQYAAKKSEGSGRLRTALNNSQSQSRVEPHLEPQVLFVYPPEKQLPLKYKDLLSFCFPGGVEVHAVEKTPSMSELNEILLGQEHFKQSDLSFVFRLQVADDSTLYGCCVLVEELVQKPSGLLSVSEKPSSYSSLSRSILTTRRCYCILSRLPFFELHFGVLNRVEFVMLHGEHRLERLAFSYARKFATIFTEERLQRLTKGIGVLNLDSIENLRNEEDLVEDIGCRTLDQSAAEDVQGEEEYSQRMGDENHVEHQMLDGNFQCLKKGVSDDIVATLDPEPEVVTAEIESVTVHKENHDMDVDDFTRNKQAIDRRLPNAVLPLLRYYQYESSESSSSFQGSPSEDRNFRSDADDTETEEASFSGQDDSTDLLDILEWAKENKNGSLQIICEYYQLHYPARGCSVKFHPLEHLHPLEYYRSGKTVLHVAGSTIDPRSCSTSLELAEAQGALLVEEEANALSIWTVASICGSLRLEHILSILAGALLEKQIVIVCSNLGILSASVLSIIPMIRPYQWQSLLMPVGVKNKTSEVQSKLTNAVLVDVNKNQVKAPTIPQLPKQKELFSSLRPYHAELVGESFLGRKRPVHECTDVQVEAAKGFLKVLRLYLDALCSNLRSHTITNVQSNDDKVSLLLKESFIESFPSPMSSRNRFPFTASQWQELEHQALIFKYMVSGIPVPPDLLYTIKRTSLSLDTPFISRLFPHQYPDVGWNYVQMGSGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTTITTALNSNPSSSITHNSTHSFASLTNSETHPHPHPFLYQHPSASSAHPSLLPDYRRNRYVYGGKEEDVDEQPFVREQHSGNMRGFSASSMEDSWQLTPLTMSCSSSSSRYKNGSGLEGDYSSYLQLQSFGKYNEMQSKMEREEPQKIMHHFFDEWSAKDRESWVDLDDKSSNNTGSVSATRLSMSIPNHDFSSIFTSNKHNEN 1118
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1725553 1737574 + Lsi11G001600.1 Lsi11g00160 673327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00160 1118 MobiDBLite consensus disorder prediction 43 68 - -
Lsi11g00160 1118 PANTHER DENN (AEX-3) DOMAIN-CONTAINING PROTEIN 333 787 - -
Lsi11g00160 1118 SMART DENN_cls 285 690 IPR001194 -
Lsi11g00160 1118 ProSiteProfiles WRC domain profile. 866 910 IPR014977 -
Lsi11g00160 1118 SMART QLQ_2 795 831 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lsi11g00160 1118 MobiDBLite consensus disorder prediction 477 510 - -
Lsi11g00160 1118 MobiDBLite consensus disorder prediction 919 943 - -
Lsi11g00160 1118 Gene3D - 604 751 IPR043153 -
Lsi11g00160 1118 PANTHER SUPPRESSION OF TUMORIGENICITY 5 ST5 333 787 - -
Lsi11g00160 1118 MobiDBLite consensus disorder prediction 1 24 - -
Lsi11g00160 1118 ProSiteProfiles QLQ domain profile. 796 831 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lsi11g00160 1118 PANTHER DENN (AEX-3) DOMAIN-CONTAINING PROTEIN 12 324 - -
Lsi11g00160 1118 Pfam QLQ 796 829 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lsi11g00160 1118 Pfam WRC 867 909 IPR014977 -
Lsi11g00160 1118 Pfam DENN (AEX-3) domain 607 666 IPR001194 -
Lsi11g00160 1118 Gene3D - 115 331 - -
Lsi11g00160 1118 Pfam uDENN domain 178 255 IPR005113 -
Lsi11g00160 1118 PANTHER SUPPRESSION OF TUMORIGENICITY 5 ST5 12 324 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00619 Lsi-Chr7:6656173 Lsi11g00160 Lsi-Chr11:1725553 5.43E-64 dispersed
Lsi10g00222 Lsi-Chr10:3565565 Lsi11g00160 Lsi-Chr11:1725553 7.36E-57 dispersed
Lsi09g01804 Lsi-Chr9:26789644 Lsi11g00160 Lsi-Chr11:1725553 1.02E-08 transposed
Lsi11g00160 Lsi-Chr11:1725553 Lsi06g00321 Lsi-Chr6:3633517 5.27E-95 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26130 PF02141 DENN 2.50E-07 CL0330 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00160 - - csv:101208952 1341.25