Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00160 ATGGCCGAGGAGGAGAGGAGAAGGGTTTTAGGGATGGAAAAGAACGAAGAGACGGGGAGCTCTGGATGGGGTGCTTCACTTTTTCTCCAGACTACTGAAGATGTTGCAAGAGCTGTGGCTGCTGCAGCTGCTGCCGCAACCGATGCTCGCTCTCCTCGTCCTTCTGTTATATATTCTTCAAAAGACGATGAGGGCGGTAGTCCACTTCAGAGACTGCAGCGTCAAGTTAATAAAGTGATTAAAGGATTCTCTAGTCCTCCTCAAGTCAAAACTGCAGGAACTTACAATCCTGAAGTTCTCACTACCCAAAAGCGTCAGTGGGCGAATTTCCAGTTGCAATACTTGGACCATCGATCTCAGAAGGAGCCAACTAGGATTTTTGAGAGCATGGTTGTTGTTGGCCTTCATCCTAATTGTGATATTCAGGCACTTCAGAGGCAGTATGCTGCAAAGAAGTCAGAAGGTTCCGGGAGACTGCGAACTGCTCTTAATAATAGTCAGAGCCAATCTCGGGTGGAACCTCATCTTGAACCACAGGTTTTATTTGTTTACCCTCCAGAGAAACAGTTACCGCTCAAGTACAAGGACCTTCTTTCATTCTGCTTTCCAGGAGGTGTGGAGGTTCACGCTGTTGAGAAAACTCCTTCCATGAGTGAGTTGAATGAGATTCTTCTTGGGCAGGAACACTTTAAGCAAAGTGATCTCTCGTTTGTATTCCGCTTACAGGTTGCTGATGATTCGACATTGTACGGATGCTGTGTTTTAGTTGAAGAATTAGTGCAGAAACCCTCTGGGTTGCTTTCTGTTTCTGAAAAACCATCTTCCTACTCATCCTTGAGCCGTTCTATACTAACCACACGCAGATGCTACTGCATCCTATCTCGGTTGCCATTCTTCGAATTACATTTCGGTGTGTTGAATAGAGTGGAATTTGTAATGCTTCACGGGGAGCACAGATTAGAGAGATTGGCGTTTTCATATGCTAGGAAATTTGCCACCATCTTCACCGAAGAAAGGCTGCAAAGATTAACAAAAGGTATTGGTGTTTTGAATTTGGACTCCATAGAGAATTTGAGAAATGAAGAAGATTTGGTGGAAGACATAGGTTGCAGGACGTTAGATCAGAGTGCAGCTGAAGACGTGCAGGGAGAAGAGGAATATTCTCAAAGAATGGGTGATGAAAATCATGTTGAGCATCAAATGCTCGATGGAAATTTTCAATGTCTGAAAAAGGGTGTTAGTGATGATATAGTTGCCACACTCGATCCAGAACCAGAGGTAGTTACAGCCGAAATAGAATCTGTTACTGTACATAAGGAAAATCATGATATGGATGTTGATGATTTTACAAGAAACAAGCAGGCAATTGATAGACGTTTACCGAATGCTGTTCTACCTCTCCTTCGTTATTATCAATATGAAAGCTCTGAATCGTCCTCGAGTTTTCAGGGGTCTCCGAGTGAAGACAGAAATTTCAGAAGTGATGCTGATGACACAGAGACAGAGGAGGCATCTTTCTCTGGCCAGGATGATTCCACGGACCTACTTGACATTCTTGAATGGGCCAAGGAAAATAAGAATGGATCATTACAAATCATATGCGAGTATTACCAGTTGCATTACCCTGCTAGGGGCTGTTCTGTTAAGTTTCATCCTTTGGAGCACCTGCATCCCTTGGAGTATTATAGATCAGGCAAAACAGTTCTACATGTTGCTGGGTCGACCATTGATCCAAGATCATGCAGTACAAGTCTTGAATTAGCAGAGGCACAAGGTGCTCTCCTGGTAGAGGAGGAAGCAAATGCCTTGTCAATATGGACTGTTGCAAGCATTTGTGGTTCTTTACGCCTTGAGCATATTTTATCAATTTTAGCTGGAGCGCTGCTGGAGAAGCAGATTGTGATCGTTTGTTCCAATCTGGGTATCCTATCAGCTTCAGTTTTATCAATTATCCCTATGATTCGTCCCTACCAGTGGCAAAGCTTGCTGATGCCAGTTGGTGTGAAAAATAAAACCAGTGAAGTGCAGTCAAAGTTAACCAATGCCGTTTTGGTTGATGTGAACAAGAACCAGGTCAAGGCCCCAACAATACCTCAGTTGCCAAAACAAAAGGAGTTATTCTCATCATTAAGACCATATCACGCGGAGCTAGTTGGAGAGAGTTTTTTGGGGAGAAAGAGGCCAGTGCATGAATGCACTGATGTGCAGGTTGAAGCCGCCAAGGGTTTTCTAAAAGTGCTAAGATTATACTTGGACGCTCTCTGCTCTAACCTCCGTTCACATACAATTACTAATGTACAATCGAATGATGATAAGGTATCATTACTCTTGAAGGAGAGCTTCATTGAGTCGTTCCCAAGCCCAATGAGCTCAAGAAACAGATTTCCTTTCACTGCATCTCAATGGCAAGAGCTGGAACATCAAGCCCTTATCTTCAAGTACATGGTCTCCGGCATCCCTGTCCCTCCTGATCTGCTTTACACCATTAAAAGAACTTCTTTGTCTTTGGACACTCCTTTCATTTCCAGGCTCTTTCCCCACCAATATCCAGATGTTGGATGGAACTATGTGCAAATGGGTTCAGGGAGGAAAATCGATCCAGAGCCTGGAAGGTGTAGAAGAACAGATGGCAAAAAATGGAGATGCTCCAAAGAAGCATACCCAGATTCTAAATATTGTGAGAGACATATGCATAGAGGTAAAAATCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACAACAATAACAACTGCTCTAAACTCTAATCCATCATCATCCATTACCCATAACTCTACTCATTCCTTTGCTTCACTCACCAACTCTGAAACTCATCCCCATCCCCACCCTTTTCTCTATCAACATCCTTCTGCTTCTTCTGCTCATCCATCCTTACTTCCAGATTACAGAAGAAACAGGTATGTTTATGGGGGGAAGGAAGAAGATGTTGATGAACAACCCTTTGTGAGGGAACAACATTCAGGGAACATGAGAGGCTTCTCTGCTTCATCTATGGAAGATTCCTGGCAGCTAACTCCTTTGACAATGAGTTGCTCTTCCTCATCCTCCAGATACAAGAATGGCTCTGGTTTAGAAGGTGACTACTCTTCTTACTTGCAGCTGCAGAGCTTTGGAAAATATAATGAGATGCAGAGTAAGATGGAAAGAGAGGAACCACAGAAGATTATGCATCATTTTTTTGATGAATGGTCTGCTAAAGACAGAGAGTCTTGGGTTGATTTGGATGATAAGTCATCCAATAATACTGGCTCAGTTTCTGCAACTAGGCTCTCAATGTCTATTCCTAACCATGACTTCTCCTCTATCTTCACTTCCAATAAGCATAATGAAAACTGA 3357 43.07 MAEEERRRVLGMEKNEETGSSGWGASLFLQTTEDVARAVAAAAAAATDARSPRPSVIYSSKDDEGGSPLQRLQRQVNKVIKGFSSPPQVKTAGTYNPEVLTTQKRQWANFQLQYLDHRSQKEPTRIFESMVVVGLHPNCDIQALQRQYAAKKSEGSGRLRTALNNSQSQSRVEPHLEPQVLFVYPPEKQLPLKYKDLLSFCFPGGVEVHAVEKTPSMSELNEILLGQEHFKQSDLSFVFRLQVADDSTLYGCCVLVEELVQKPSGLLSVSEKPSSYSSLSRSILTTRRCYCILSRLPFFELHFGVLNRVEFVMLHGEHRLERLAFSYARKFATIFTEERLQRLTKGIGVLNLDSIENLRNEEDLVEDIGCRTLDQSAAEDVQGEEEYSQRMGDENHVEHQMLDGNFQCLKKGVSDDIVATLDPEPEVVTAEIESVTVHKENHDMDVDDFTRNKQAIDRRLPNAVLPLLRYYQYESSESSSSFQGSPSEDRNFRSDADDTETEEASFSGQDDSTDLLDILEWAKENKNGSLQIICEYYQLHYPARGCSVKFHPLEHLHPLEYYRSGKTVLHVAGSTIDPRSCSTSLELAEAQGALLVEEEANALSIWTVASICGSLRLEHILSILAGALLEKQIVIVCSNLGILSASVLSIIPMIRPYQWQSLLMPVGVKNKTSEVQSKLTNAVLVDVNKNQVKAPTIPQLPKQKELFSSLRPYHAELVGESFLGRKRPVHECTDVQVEAAKGFLKVLRLYLDALCSNLRSHTITNVQSNDDKVSLLLKESFIESFPSPMSSRNRFPFTASQWQELEHQALIFKYMVSGIPVPPDLLYTIKRTSLSLDTPFISRLFPHQYPDVGWNYVQMGSGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTTITTALNSNPSSSITHNSTHSFASLTNSETHPHPHPFLYQHPSASSAHPSLLPDYRRNRYVYGGKEEDVDEQPFVREQHSGNMRGFSASSMEDSWQLTPLTMSCSSSSSRYKNGSGLEGDYSSYLQLQSFGKYNEMQSKMEREEPQKIMHHFFDEWSAKDRESWVDLDDKSSNNTGSVSATRLSMSIPNHDFSSIFTSNKHNEN 1118
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1725553 1737574 + Lsi11G001600.1 Lsi11g00160 673327

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00160 1118 MobiDBLite consensus disorder prediction 43 68 - -
Lsi11g00160 1118 PANTHER DENN (AEX-3) DOMAIN-CONTAINING PROTEIN 333 787 - -
Lsi11g00160 1118 SMART DENN_cls 285 690 IPR001194 -
Lsi11g00160 1118 ProSiteProfiles WRC domain profile. 866 910 IPR014977 -
Lsi11g00160 1118 SMART QLQ_2 795 831 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lsi11g00160 1118 MobiDBLite consensus disorder prediction 477 510 - -
Lsi11g00160 1118 MobiDBLite consensus disorder prediction 919 943 - -
Lsi11g00160 1118 Gene3D - 604 751 IPR043153 -
Lsi11g00160 1118 PANTHER SUPPRESSION OF TUMORIGENICITY 5 ST5 333 787 - -
Lsi11g00160 1118 MobiDBLite consensus disorder prediction 1 24 - -
Lsi11g00160 1118 ProSiteProfiles QLQ domain profile. 796 831 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lsi11g00160 1118 PANTHER DENN (AEX-3) DOMAIN-CONTAINING PROTEIN 12 324 - -
Lsi11g00160 1118 Pfam QLQ 796 829 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lsi11g00160 1118 Pfam WRC 867 909 IPR014977 -
Lsi11g00160 1118 Pfam DENN (AEX-3) domain 607 666 IPR001194 -
Lsi11g00160 1118 Gene3D - 115 331 - -
Lsi11g00160 1118 Pfam uDENN domain 178 255 IPR005113 -
Lsi11g00160 1118 PANTHER SUPPRESSION OF TUMORIGENICITY 5 ST5 12 324 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00160 - - - csv:101208952 1341.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00619 Lsi-Chr7:6656173 Lsi11g00160 Lsi-Chr11:1725553 5.43E-64 dispersed
Lsi10g00222 Lsi-Chr10:3565565 Lsi11g00160 Lsi-Chr11:1725553 7.36E-57 dispersed
Lsi09g01804 Lsi-Chr9:26789644 Lsi11g00160 Lsi-Chr11:1725553 1.02E-08 transposed
Lsi11g00160 Lsi-Chr11:1725553 Lsi06g00321 Lsi-Chr6:3633517 5.27E-95 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g89 Blo01g00569 Blo16g00962 . Bda11g01019 . Bpe02g02179 . . . . Cma05g01422 . Car05g01338 . . . . . . . . . . . . . . . . . . . . . Cone7ag0787 . Csa02g00018 Chy05g01469 . . . . . . Bpe13g01231 Bma01g00258 Bma06g00898 . Cmo05g01418 . . . . . . . Bhi06g01584 Tan08g0016 . . . . . . . . . . . . Lsi11g00160 . . Cme05g02071
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi11g00160 . 794 900 GRF Transcription Factor Family AT3G13960 72.9 4.2e-43 172.6
Lsi06g00321 . 8 110 GRF Transcription Factor Family AT3G13960 72.8 3.5e-42 169.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003568 1 5 2 2 2 1 1 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 5 2 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26130 PF02141 DENN 2.50E-07 CL0330 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g00160 Lsi_Chr11 FPKM 12.145712 12.835268 7.701543 7.728328 23.657101 19.856663 25.808067 2.002201 2.41532 1.361538