Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00167 ATGCCAGTGCATCTCACGCCCAATGCAATCTCTGCCATTGTCGCTGGTGACGTTAATTCCAAGCCTCTGGTGCAGGTCTTAGATATCAAACTGATCGGTAATGCGCAGGAAAGGTACAGCCTCTTGATCTCCGATGCGGTTTCTGCTGAGCAGGCTATGCTCGCAACTCAGCTTAATGATATTATTAAGACTGGACGAGTCAAGAAAGGATCCGTTATCCAGTTGATCGATTATGTCTGCAGTCCCATCAAGAATCGCAAGATTATTGTTGTGCTCTGCCTGGAAACTATTATATTGGATTGTGAGATAATTGGGAATCCAAAATCATCTGCTCAATCAGAGAATTTTGCACAAAAGGCAACGCCATCTGGAAATTTGGAGCAACCTGCCAAGGTTGGTAATGGTCATTTGAGTGCCAGAAATCCAGTTCATAATGTGCAGAGCTTCCAAGCTACTGTTCAGCCTCCATATCAGCCACCTCCAAATTATAAAAATCACGGTGCAATCATTAAGAACGAGGCACCGGCTCGTATAATTCCTATAGCTGCACTGAATCCTTATCAGGGACGATGGGCTATAAAGGCAAGAGTTACTGCAAAGGGTGATCTCCGTCGCTATAATAATGCCAAAGGAGATGGAAAAGTTTTCTCTTTTGACCTCCTTGATTCTGATGGAGGAGAGATACGTGTGACCTGCTTCAATGCTGTTGTGGATCGTTTCTACGATGTCATAGAAGTTGGTAAAGTCTACTTGATTTCCAAAGGTAGCCTAAAACCGGCGCGGAAGGATTTCAATCACCTAAAGAATGAATGGGAGGTTTTCTTGGAGGCATCTTCCACTGTGGAAGTTTGCCCAGATGAAGATGATACCATACCAAGACAGCAGTTTTCTTTTCGACCTATCAGTGAAATTGAAAATGCTGAAACCAACTCTATTCTGGACGTTATTGGTATTGTAACATCTGTCAATCCATCAATTCCTGTTTTGAGAAAAAATGGTATGGAAACTCAAAGAAGAGTTGTGAATTTGAAGGATGCGTCTGGCAGGAGTGTTGAGTTGACACTGTGGGGGGATTTTTGCAACAAAGAGGGTCAAAAACTGCAAGAAATAATGAACTCGGGCCTCTCTCCAGTTTTAGCTGTGAAATCTGGGAAAGTAAGTGATTTCACTGGGAAATCCATTGGGACAATTTCTTCTACTCAGCTTTTCATAAATCCAGATCTTTCTGAGGCTCACATCTTGAGGGACTGGTACGATGGTGGGGGGAAGAATACTACTTCTCTGTCTATTTCTAAAGAAATTATGCCAGGATCTGCCAAGAATGAGATTCGGAAGACTGTGTCTCAGATTAAAGATGAAGGACTCGGCAGAGCTGATAAGCCAGATTGGATAACGGTGAAAGCAACAATATCCTTTATCAAAACAAATTCTTTCTGCTACACAGCATGTCCGTTAATGATCGGAGATCGACAATGCAACAAGAAGGTGACTAGATCAGGAAACTCGAAGTGGTTGTGTGACAGGTGTAATCAAGAATTTGAGGATTGCGATTACAGGTATCTTCTTCAAGCCCAAATCCAAGATCATACTGGATTGACATGGGTGACTGCCTTCCAGGAAACTGGTGAAGAGATTCTGGGTGTTTCAGCCAAGGAGTTGTACATGTTGAAGTATGAAGAGCAAGATGATGTCAAGTTTGGTGAAATAATCAGAAGTAAAATTTTCGATCAATTTCTGTTTAGGCTCAAAATTAAGGAGGAGATGTATGGGGATGAACAGAGGGTGAAAAATACTGTAGTCAAGGCAGATAGGGTAAACTATTCTTCAGAAAGCAAATATATGTTGGATTTGCTTTCCAAATTTTCGAGGTAA 1872 41.93 MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLNDIIKTGRVKKGSVIQLIDYVCSPIKNRKIIVVLCLETIILDCEIIGNPKSSAQSENFAQKATPSGNLEQPAKVGNGHLSARNPVHNVQSFQATVQPPYQPPPNYKNHGAIIKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYDVIEVGKVYLISKGSLKPARKDFNHLKNEWEVFLEASSTVEVCPDEDDTIPRQQFSFRPISEIENAETNSILDVIGIVTSVNPSIPVLRKNGMETQRRVVNLKDASGRSVELTLWGDFCNKEGQKLQEIMNSGLSPVLAVKSGKVSDFTGKSIGTISSTQLFINPDLSEAHILRDWYDGGGKNTTSLSISKEIMPGSAKNEIRKTVSQIKDEGLGRADKPDWITVKATISFIKTNSFCYTACPLMIGDRQCNKKVTRSGNSKWLCDRCNQEFEDCDYRYLLQAQIQDHTGLTWVTAFQETGEEILGVSAKELYMLKYEEQDDVKFGEIIRSKIFDQFLFRLKIKEEMYGDEQRVKNTVVKADRVNYSSESKYMLDLLSKFSR 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1774806 1779509 + Lsi11G001670.1 Lsi11g00167 673334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00167 623 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 2 618 - -
Lsi11g00167 623 Gene3D - 177 287 IPR012340 -
Lsi11g00167 623 Pfam OB-fold nucleic acid binding domain 192 263 IPR004365 GO:0003676
Lsi11g00167 623 SUPERFAMILY Nucleic acid-binding proteins 1 106 IPR012340 -
Lsi11g00167 623 SUPERFAMILY Nucleic acid-binding proteins 295 426 IPR012340 -
Lsi11g00167 623 Pfam Replication factor-A protein 1, N-terminal domain 5 97 IPR007199 GO:0003677|GO:0005634|GO:0006260
Lsi11g00167 623 CDD RPA1_DBD_B 312 419 - -
Lsi11g00167 623 SUPERFAMILY Nucleic acid-binding proteins 177 291 IPR012340 -
Lsi11g00167 623 Pfam Replication protein A OB domain 301 405 IPR031657 -
Lsi11g00167 623 CDD RPA1_DBD_A 180 282 - -
Lsi11g00167 623 PANTHER REPLICATION FACTOR A 1, RFA1 2 618 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lsi11g00167 623 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 4 620 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lsi11g00167 623 SUPERFAMILY Nucleic acid-binding proteins 444 621 IPR012340 -
Lsi11g00167 623 CDD RPA1_DBD_C 447 620 IPR013955 -
Lsi11g00167 623 CDD RPA1N 9 98 IPR007199 GO:0003677|GO:0005634|GO:0006260
Lsi11g00167 623 Pfam Replication factor-A C terminal domain 463 614 IPR013955 -
Lsi11g00167 623 Gene3D - 290 430 IPR012340 -
Lsi11g00167 623 Gene3D - 3 111 IPR012340 -
Lsi11g00167 623 Gene3D - 431 622 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01410 Lsi-Chr6:24675472 Lsi11g00167 Lsi-Chr11:1774806 1.72E-99 dispersed
Lsi07g01137 Lsi-Chr7:16797318 Lsi11g00167 Lsi-Chr11:1774806 2.39E-20 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00167 K07466 - csv:101207583 1205.66