Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00171 ATGGAGCACTTGGAGTGGGCAGAAAGACCGCCATTAATAACAAGTAATACATTTATTTACCGTCGTTTTGACTTCGGCGGCATTTCTCGCCATAAAATCAAATTTAAAAATCGATTTAAATCCGCCAGCCAAACAGCACGTGCCACGTCTATGGATGTTGAAGAAATCCCAGGTCGGGCTCGGGCTCTTGCATGGTATCTTTGCCGCGCTATTGTCTTAAAAAGTGGGCTCTGGATTCCAGTAAATATGGATGGGGGAGCAGCTTACAATCCTCGGACTGTGGAAGAGGTTTTCAGGGACTTTAAGGGCCGTCGTGCCGGAATGATTAGAGCTCTCACCACTGGTCTTGTTCAATCTCCGTTTTCCTTTTCCTCCTCATCTATTTCTGGCTTTTCGTTTTCTAGTTTTGGGGTTTTCAATAGGTTTTCATGGCGCTGTACACTTCTCGTTAGCTTTTCTGCAGGGTGCCTTGTAATTTTACTCTTCTCTCTTGCCATCTTCTTGCAGATGTCGAAGAATTTTATCAGCTTTGCGACCCTGAGAAGGAAAACCTCTGCCTCTATGGATTCCCTAATGAACAGTGGGAGGTTAATTTGCCTGGTGAGGAAGTACCTCCAGAGCTTCCGGAACCAGCATTGGGCATTAACTTTGCTAGAGATGGGATGCAAGAAAAGGATTGGATATCCCTTGTTGTCGTTCATAGTGATGCCTGGCTTCTTGCTGTACTTTCTTTCGCTTGCCATTGATGAACTAAATTTGCTGGCTGTTGCTGCTGCTTCGGCACCACAGTTACATGACACTACGAAACGCCTTTTTACAATGATAAATGATCTACCCACAATATTTGAGGTTGTGACGGGAAGTGTGAAGAAACAGGGAAAAGACAAGTCATTAGTTTCAAATAACAGCAGCAACAAATCCAAGATGGGCCCAAAAGGGCGAGGTTCTGAATCAAGCAAATTGTCTAAGGGGTTGGCAAAAGATGAGGACGAGGGACTGGATGAGGAAGAAGAGGAGCATGGGGAGACCTTATGTGGGGCATGCGGGGAGAATTATGCATCGGACGAGTTCTGGATATGTTGTGACATCTGTGAGAAATGGTTCCACGGAAAGTGTGTGAAGATCACTCCTGCAAGGGCTGAACATATCAAGCAATACAAATGCCCCTCGTGCAGCAATAAGAGAGCACGGCCCTGA 1197 45.7 MEHLEWAERPPLITSNTFIYRRFDFGGISRHKIKFKNRFKSASQTARATSMDVEEIPGRARALAWYLCRAIVLKSGLWIPVNMDGGAAYNPRTVEEVFRDFKGRRAGMIRALTTGLVQSPFSFSSSSISGFSFSSFGVFNRFSWRCTLLVSFSAGCLVILLFSLAIFLQMSKNFISFATLRRKTSASMDSLMNSGRLICLVRKYLQSFRNQHWALTLLEMGCKKRIGYPLLSFIVMPGFLLYFLSLAIDELNLLAVAAASAPQLHDTTKRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSSNKSKMGPKGRGSESSKLSKGLAKDEDEGLDEEEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1805696 1809496 + Lsi11G001710.1 Lsi11g00171 673338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00171 398 MobiDBLite consensus disorder prediction 293 336 - -
Lsi11g00171 398 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 267 398 - -
Lsi11g00171 398 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 85 115 - -
Lsi11g00171 398 SMART PHD_3 344 392 IPR001965 -
Lsi11g00171 398 ProSitePatterns Zinc finger PHD-type signature. 345 391 IPR019786 -
Lsi11g00171 398 ProSiteProfiles Zinc finger PHD-type profile. 342 394 IPR019787 -
Lsi11g00171 398 MobiDBLite consensus disorder prediction 293 312 - -
Lsi11g00171 398 CDD PHD_AL_plant 344 394 IPR044104 -
Lsi11g00171 398 PANTHER CPG BINDING PROTEIN 267 398 IPR045104 GO:0006355|GO:0042393
Lsi11g00171 398 Pfam PHD-finger 345 394 IPR019787 -
Lsi11g00171 398 SUPERFAMILY FYVE/PHD zinc finger 334 395 IPR011011 -
Lsi11g00171 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 335 393 IPR013083 -
Lsi11g00171 398 PANTHER CPG BINDING PROTEIN 85 115 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00769 Lsi-Chr5:10818138 Lsi11g00171 Lsi-Chr11:1805696 2.23E-06 dispersed
Lsi08g00842 Lsi-Chr8:16868547 Lsi11g00171 Lsi-Chr11:1805696 4.26E-59 dispersed
Lsi11g00171 Lsi-Chr11:1805696 Lsi03g00257 Lsi-Chr3:3204463 1.68E-06 dispersed
Lsi11g00171 Lsi-Chr11:1805696 Lsi02g02913 Lsi-Chr2:35346170 1.39E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26131 PF00628 PHD 3.70E-10 CL0390 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00171 - - jre:109009410 218.394