Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g00171 | ATGGAGCACTTGGAGTGGGCAGAAAGACCGCCATTAATAACAAGTAATACATTTATTTACCGTCGTTTTGACTTCGGCGGCATTTCTCGCCATAAAATCAAATTTAAAAATCGATTTAAATCCGCCAGCCAAACAGCACGTGCCACGTCTATGGATGTTGAAGAAATCCCAGGTCGGGCTCGGGCTCTTGCATGGTATCTTTGCCGCGCTATTGTCTTAAAAAGTGGGCTCTGGATTCCAGTAAATATGGATGGGGGAGCAGCTTACAATCCTCGGACTGTGGAAGAGGTTTTCAGGGACTTTAAGGGCCGTCGTGCCGGAATGATTAGAGCTCTCACCACTGGTCTTGTTCAATCTCCGTTTTCCTTTTCCTCCTCATCTATTTCTGGCTTTTCGTTTTCTAGTTTTGGGGTTTTCAATAGGTTTTCATGGCGCTGTACACTTCTCGTTAGCTTTTCTGCAGGGTGCCTTGTAATTTTACTCTTCTCTCTTGCCATCTTCTTGCAGATGTCGAAGAATTTTATCAGCTTTGCGACCCTGAGAAGGAAAACCTCTGCCTCTATGGATTCCCTAATGAACAGTGGGAGGTTAATTTGCCTGGTGAGGAAGTACCTCCAGAGCTTCCGGAACCAGCATTGGGCATTAACTTTGCTAGAGATGGGATGCAAGAAAAGGATTGGATATCCCTTGTTGTCGTTCATAGTGATGCCTGGCTTCTTGCTGTACTTTCTTTCGCTTGCCATTGATGAACTAAATTTGCTGGCTGTTGCTGCTGCTTCGGCACCACAGTTACATGACACTACGAAACGCCTTTTTACAATGATAAATGATCTACCCACAATATTTGAGGTTGTGACGGGAAGTGTGAAGAAACAGGGAAAAGACAAGTCATTAGTTTCAAATAACAGCAGCAACAAATCCAAGATGGGCCCAAAAGGGCGAGGTTCTGAATCAAGCAAATTGTCTAAGGGGTTGGCAAAAGATGAGGACGAGGGACTGGATGAGGAAGAAGAGGAGCATGGGGAGACCTTATGTGGGGCATGCGGGGAGAATTATGCATCGGACGAGTTCTGGATATGTTGTGACATCTGTGAGAAATGGTTCCACGGAAAGTGTGTGAAGATCACTCCTGCAAGGGCTGAACATATCAAGCAATACAAATGCCCCTCGTGCAGCAATAAGAGAGCACGGCCCTGA | 1197 | 45.7 | MEHLEWAERPPLITSNTFIYRRFDFGGISRHKIKFKNRFKSASQTARATSMDVEEIPGRARALAWYLCRAIVLKSGLWIPVNMDGGAAYNPRTVEEVFRDFKGRRAGMIRALTTGLVQSPFSFSSSSISGFSFSSFGVFNRFSWRCTLLVSFSAGCLVILLFSLAIFLQMSKNFISFATLRRKTSASMDSLMNSGRLICLVRKYLQSFRNQHWALTLLEMGCKKRIGYPLLSFIVMPGFLLYFLSLAIDELNLLAVAAASAPQLHDTTKRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSSNKSKMGPKGRGSESSKLSKGLAKDEDEGLDEEEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP | 398 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1805696 | 1809496 | + | Lsi11G001710.1 | Lsi11g00171 | 673338 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g00171 | 398 | MobiDBLite | consensus disorder prediction | 293 | 336 | - | - | |
Lsi11g00171 | 398 | PANTHER | PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 | 267 | 398 | - | - | |
Lsi11g00171 | 398 | PANTHER | PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 | 85 | 115 | - | - | |
Lsi11g00171 | 398 | SMART | PHD_3 | 344 | 392 | IPR001965 | - | |
Lsi11g00171 | 398 | ProSitePatterns | Zinc finger PHD-type signature. | 345 | 391 | IPR019786 | - | |
Lsi11g00171 | 398 | ProSiteProfiles | Zinc finger PHD-type profile. | 342 | 394 | IPR019787 | - | |
Lsi11g00171 | 398 | MobiDBLite | consensus disorder prediction | 293 | 312 | - | - | |
Lsi11g00171 | 398 | CDD | PHD_AL_plant | 344 | 394 | IPR044104 | - | |
Lsi11g00171 | 398 | PANTHER | CPG BINDING PROTEIN | 267 | 398 | IPR045104 | GO:0006355|GO:0042393 | |
Lsi11g00171 | 398 | Pfam | PHD-finger | 345 | 394 | IPR019787 | - | |
Lsi11g00171 | 398 | SUPERFAMILY | FYVE/PHD zinc finger | 334 | 395 | IPR011011 | - | |
Lsi11g00171 | 398 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 335 | 393 | IPR013083 | - | |
Lsi11g00171 | 398 | PANTHER | CPG BINDING PROTEIN | 85 | 115 | IPR045104 | GO:0006355|GO:0042393 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi05g00769 | Lsi-Chr5:10818138 | Lsi11g00171 | Lsi-Chr11:1805696 | 2.23E-06 | dispersed | |
Lsi08g00842 | Lsi-Chr8:16868547 | Lsi11g00171 | Lsi-Chr11:1805696 | 4.26E-59 | dispersed | |
Lsi11g00171 | Lsi-Chr11:1805696 | Lsi03g00257 | Lsi-Chr3:3204463 | 1.68E-06 | dispersed | |
Lsi11g00171 | Lsi-Chr11:1805696 | Lsi02g02913 | Lsi-Chr2:35346170 | 1.39E-56 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26131 | PF00628 | PHD | 3.70E-10 | CL0390 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g00171 | - | - | jre:109009410 | 218.394 |