Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00171 ATGGAGCACTTGGAGTGGGCAGAAAGACCGCCATTAATAACAAGTAATACATTTATTTACCGTCGTTTTGACTTCGGCGGCATTTCTCGCCATAAAATCAAATTTAAAAATCGATTTAAATCCGCCAGCCAAACAGCACGTGCCACGTCTATGGATGTTGAAGAAATCCCAGGTCGGGCTCGGGCTCTTGCATGGTATCTTTGCCGCGCTATTGTCTTAAAAAGTGGGCTCTGGATTCCAGTAAATATGGATGGGGGAGCAGCTTACAATCCTCGGACTGTGGAAGAGGTTTTCAGGGACTTTAAGGGCCGTCGTGCCGGAATGATTAGAGCTCTCACCACTGGTCTTGTTCAATCTCCGTTTTCCTTTTCCTCCTCATCTATTTCTGGCTTTTCGTTTTCTAGTTTTGGGGTTTTCAATAGGTTTTCATGGCGCTGTACACTTCTCGTTAGCTTTTCTGCAGGGTGCCTTGTAATTTTACTCTTCTCTCTTGCCATCTTCTTGCAGATGTCGAAGAATTTTATCAGCTTTGCGACCCTGAGAAGGAAAACCTCTGCCTCTATGGATTCCCTAATGAACAGTGGGAGGTTAATTTGCCTGGTGAGGAAGTACCTCCAGAGCTTCCGGAACCAGCATTGGGCATTAACTTTGCTAGAGATGGGATGCAAGAAAAGGATTGGATATCCCTTGTTGTCGTTCATAGTGATGCCTGGCTTCTTGCTGTACTTTCTTTCGCTTGCCATTGATGAACTAAATTTGCTGGCTGTTGCTGCTGCTTCGGCACCACAGTTACATGACACTACGAAACGCCTTTTTACAATGATAAATGATCTACCCACAATATTTGAGGTTGTGACGGGAAGTGTGAAGAAACAGGGAAAAGACAAGTCATTAGTTTCAAATAACAGCAGCAACAAATCCAAGATGGGCCCAAAAGGGCGAGGTTCTGAATCAAGCAAATTGTCTAAGGGGTTGGCAAAAGATGAGGACGAGGGACTGGATGAGGAAGAAGAGGAGCATGGGGAGACCTTATGTGGGGCATGCGGGGAGAATTATGCATCGGACGAGTTCTGGATATGTTGTGACATCTGTGAGAAATGGTTCCACGGAAAGTGTGTGAAGATCACTCCTGCAAGGGCTGAACATATCAAGCAATACAAATGCCCCTCGTGCAGCAATAAGAGAGCACGGCCCTGA 1197 45.7 MEHLEWAERPPLITSNTFIYRRFDFGGISRHKIKFKNRFKSASQTARATSMDVEEIPGRARALAWYLCRAIVLKSGLWIPVNMDGGAAYNPRTVEEVFRDFKGRRAGMIRALTTGLVQSPFSFSSSSISGFSFSSFGVFNRFSWRCTLLVSFSAGCLVILLFSLAIFLQMSKNFISFATLRRKTSASMDSLMNSGRLICLVRKYLQSFRNQHWALTLLEMGCKKRIGYPLLSFIVMPGFLLYFLSLAIDELNLLAVAAASAPQLHDTTKRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSSNKSKMGPKGRGSESSKLSKGLAKDEDEGLDEEEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1805696 1809496 + Lsi11G001710.1 Lsi11g00171 673338

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00171 398 MobiDBLite consensus disorder prediction 293 336 - -
Lsi11g00171 398 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 267 398 - -
Lsi11g00171 398 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 85 115 - -
Lsi11g00171 398 SMART PHD_3 344 392 IPR001965 -
Lsi11g00171 398 ProSitePatterns Zinc finger PHD-type signature. 345 391 IPR019786 -
Lsi11g00171 398 ProSiteProfiles Zinc finger PHD-type profile. 342 394 IPR019787 -
Lsi11g00171 398 MobiDBLite consensus disorder prediction 293 312 - -
Lsi11g00171 398 CDD PHD_AL_plant 344 394 IPR044104 -
Lsi11g00171 398 PANTHER CPG BINDING PROTEIN 267 398 IPR045104 GO:0006355|GO:0042393
Lsi11g00171 398 Pfam PHD-finger 345 394 IPR019787 -
Lsi11g00171 398 SUPERFAMILY FYVE/PHD zinc finger 334 395 IPR011011 -
Lsi11g00171 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 335 393 IPR013083 -
Lsi11g00171 398 PANTHER CPG BINDING PROTEIN 85 115 IPR045104 GO:0006355|GO:0042393
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00171 - - - jre:109009410 218.394
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00769 Lsi-Chr5:10818138 Lsi11g00171 Lsi-Chr11:1805696 2.23E-06 dispersed
Lsi08g00842 Lsi-Chr8:16868547 Lsi11g00171 Lsi-Chr11:1805696 4.26E-59 dispersed
Lsi11g00171 Lsi-Chr11:1805696 Lsi03g00257 Lsi-Chr3:3204463 1.68E-06 dispersed
Lsi11g00171 Lsi-Chr11:1805696 Lsi02g02913 Lsi-Chr2:35346170 1.39E-56 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g114 . . . Bda11g01029 Bpe01g00604 . . Bma11g00599 . . . . . . . . . . . . . . . . Cla11g00146 Cam11g0168 Cec11g0170 Cco11g0181 Clacu11g0303 Cmu11g0156 Cre11g0655 . . . Cone7ag0758 . . . . . . Bda02g00379 . . . Bma01g00252 . . . . . . . . . . Bhi06g01609 . . . . . . Cla03g01469 Cam03g1545 Cec03g1587 Cco03g1580 Clacu03g1569 Cmu03g2125 Cre03g1798 Lsi11g00171 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi05g00769 . 1 242 Alfin-like Transcription Factor Family AT1G14510 80.2 7.9e-104 373.6
Lsi03g02216 . 14 243 Alfin-like Transcription Factor Family AT1G14510 58.2 5.7e-78 287.7
Lsi02g02913 . 107 311 Alfin-like Transcription Factor Family AT1G14510 66.5 5.3e-76 281.2
Lsi04g00981 . 8 123 Alfin-like Transcription Factor Family AT1G14510 68.6 8.3e-45 177.6
Lsi05g00769 . 9 244 Alfin-like Transcription Factor Family AT5G26210 71.4 2.6e-86 315.5
Lsi02g02913 . 107 313 Alfin-like Transcription Factor Family AT5G26210 66.4 1.2e-80 296.6
Lsi03g02216 . 14 245 Alfin-like Transcription Factor Family AT5G26210 58.1 4.0e-79 291.6
Lsi04g00981 . 7 111 Alfin-like Transcription Factor Family AT5G26210 74.3 6.4e-45 177.9
Lsi08g00842 . 59 191 Alfin-like Transcription Factor Family AT5G26210 64.4 1.6e-43 173.3
Lsi08g00841 . 1 139 Alfin-like Transcription Factor Family AT5G26210 58.3 6.9e-39 157.9
Lsi05g00769 . 9 244 Alfin-like Transcription Factor Family AT3G42790 68.0 1.4e-81 299.7
Lsi03g02216 . 14 245 Alfin-like Transcription Factor Family AT3G42790 58.3 6.7e-79 290.8
Lsi02g02913 . 107 313 Alfin-like Transcription Factor Family AT3G42790 63.8 2.1e-77 285.8
Lsi04g00981 . 7 123 Alfin-like Transcription Factor Family AT3G42790 67.2 2.6e-43 172.6
Lsi08g00842 . 59 191 Alfin-like Transcription Factor Family AT3G42790 61.2 1.5e-38 156.8
Lsi03g02216 . 7 246 Alfin-like Transcription Factor Family AT5G05610 73.4 9.8e-104 373.2
Lsi02g02913 . 107 313 Alfin-like Transcription Factor Family AT5G05610 65.9 2.3e-76 282.3
Lsi05g00769 . 9 244 Alfin-like Transcription Factor Family AT5G05610 59.7 8.7e-76 280.4
Lsi04g00981 . 1 123 Alfin-like Transcription Factor Family AT5G05610 77.2 2.7e-53 205.7
Lsi04g00982 . 2 125 Alfin-like Transcription Factor Family AT5G05610 76.0 4.6e-53 204.9
Lsi08g00842 . 59 191 Alfin-like Transcription Factor Family AT5G05610 60.2 1.7e-39 159.8
Lsi11g00171 . 253 397 Alfin-like Transcription Factor Family AT5G05610 51.7 5.5e-38 154.8
Lsi03g02216 . 49 246 Alfin-like Transcription Factor Family AT3G11200 75.2 4.4e-85 311.2
Lsi02g02913 . 104 313 Alfin-like Transcription Factor Family AT3G11200 65.3 2.1e-74 275.8
Lsi05g00769 . 33 244 Alfin-like Transcription Factor Family AT3G11200 63.4 4.5e-69 258.1
Lsi04g00982 . 2 125 Alfin-like Transcription Factor Family AT3G11200 73.2 1.2e-50 196.8
Lsi04g00981 . 43 135 Alfin-like Transcription Factor Family AT3G11200 80.6 6.3e-39 157.9
Lsi05g00769 . 1 150 Alfin-like Transcription Factor Family AT2G02470 80.1 2.4e-68 255.8
Lsi03g02216 . 14 173 Alfin-like Transcription Factor Family AT2G02470 63.6 3.8e-53 205.3
Lsi02g02913 . 107 223 Alfin-like Transcription Factor Family AT2G02470 78.6 8.1e-48 187.6
Lsi04g00981 . 8 123 Alfin-like Transcription Factor Family AT2G02470 69.5 1.9e-44 176.4
Lsi05g00769 . 3 157 Alfin-like Transcription Factor Family AT5G20510 67.9 3.8e-58 221.5
Lsi02g02913 . 107 225 Alfin-like Transcription Factor Family AT5G20510 79.3 5.8e-51 197.6
Lsi03g02216 . 13 163 Alfin-like Transcription Factor Family AT5G20510 61.8 1.0e-50 196.8
Lsi04g00981 . 7 123 Alfin-like Transcription Factor Family AT5G20510 66.4 1.5e-43 172.9
Lsi08g00841 . 1 139 Alfin-like Transcription Factor Family AT5G20510 57.9 1.3e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0063481 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26131 PF00628 PHD 3.70E-10 CL0390 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g00171 Lsi_Chr11 FPKM 9.081614 10.990178 10.142875 10.363109 13.359891 13.139039 13.536344 10.641332 10.248386 8.495419