Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00177 ATGAAGAAGGACTGCTCCATGAATCCTAACTTAAAGCTTCTTCTACCTCCGCCCGACGAAGTTTCCTTTGCCTTCATAACCCGAAGCGGTACTTTCACCGATGGCGATTTGCTTGTTAATAGGGACGGCGTTCGGATTGTTTCTCAGACGGACGACGAAAGTCCTCCACCAATAAAGCCCTCAGACAACCATTTGTCTTTAGCAGATTTAGACTCGATAAAAGTCATCGGAAAAGGAAATGGTGGAATTGTTCAATTAGTCCGACATAAATGGACCAACCAGTTTTTTGCTCTAAAGGTGATTCAGATGAATGCCGAGGAATCTTATTGTAGGCTTGTTGCTAAGGAACTAAAAATTAATCAGTTGGCACAAAACCCTTGTATCGTTGTCTGTTACCAGATCTTCTATGACAATGGTGCCATTTTCATAATCTTGGAATACATGGATGGTGGATCGCTTGCAGATCTTCTTAAAAAAGTTGAAACAATCCTAGAGCCGTATCTTGCAGCCATTTGTTACCAGGTACTACAGGGGTTAATATATCTTCATCATGATAAACATGTCATCCATAGAGACCTTAAGCCTTCAAATTTGTTGATAAATCATAGGGGGGAAGTTAAGATTACTGACTTTGGTGTTAGCGCTATACTAGCGAGTACGGCTGATCAAGCAAATTCTTTTGTTGGCACGTATGCTTACATGTCTCCGGAGAGACTCAATGGGGACAAATATGACAACAAAAGTGACATATGGAGTTTGGGTTTGGTTTTGCTAGAATGTGCGACGGGTCAATTTCCATATGCTCCACCGGATAAAGATAAAGGATGGGAAGGTTTTTTTGATGTTATGGTAGCCGTAGTAGAACTAGCATCGCCTTCTGCGCCCGAACAATTTTCTCCAGAGTTTTGCTCTTTCATTTCTTCATGGTATACAAGCTTTTGTGTTTGTGAATCATATGAAATTGTCTCTGCTGTTTCTAGGCCAAAAGATTTCATATTTCTATTCAAACTTGGGAAGAATATGTGGCTAGTATATTTTATTTTTCTATTTTTCGAGTGGGAATTTTCTCCTTCTGATGAATTGGCTTTTATATTTTTGGTTAGCTTACAGAAAGACCCACAGAAGAGAAGCTCTGCACGTGAACTTCTGGTGCATCCTTTCATCAAAAAGTTCGAAAACTTCGATGTAGATCTCGCAGCTTACTTCAAAGATGCTGGCTCTCCATTGGCAACCTTCTAA 1239 40.19 MKKDCSMNPNLKLLLPPPDEVSFAFITRSGTFTDGDLLVNRDGVRIVSQTDDESPPPIKPSDNHLSLADLDSIKVIGKGNGGIVQLVRHKWTNQFFALKVIQMNAEESYCRLVAKELKINQLAQNPCIVVCYQIFYDNGAIFIILEYMDGGSLADLLKKVETILEPYLAAICYQVLQGLIYLHHDKHVIHRDLKPSNLLINHRGEVKITDFGVSAILASTADQANSFVGTYAYMSPERLNGDKYDNKSDIWSLGLVLLECATGQFPYAPPDKDKGWEGFFDVMVAVVELASPSAPEQFSPEFCSFISSWYTSFCVCESYEIVSAVSRPKDFIFLFKLGKNMWLVYFIFLFFEWEFSPSDELAFIFLVSLQKDPQKRSSARELLVHPFIKKFENFDVDLAAYFKDAGSPLATF 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1848735 1851067 + Lsi11G001770.1 Lsi11g00177 673344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00177 412 SMART serkin_6 70 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00177 412 Gene3D Phosphorylase Kinase; domain 1 49 144 - -
Lsi11g00177 412 SUPERFAMILY Protein kinase-like (PK-like) 61 393 IPR011009 -
Lsi11g00177 412 PANTHER MAP KINASE KINASE 5 308 - -
Lsi11g00177 412 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Lsi11g00177 412 Pfam Protein kinase domain 72 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00177 412 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 357 411 - -
Lsi11g00177 412 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 5 308 - -
Lsi11g00177 412 CDD PKc_MAPKK_plant_like 68 393 - -
Lsi11g00177 412 ProSiteProfiles Protein kinase domain profile. 70 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00177 412 Gene3D Transferase(Phosphotransferase) domain 1 145 398 - -
Lsi11g00177 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Lsi11g00177 412 PANTHER MAP KINASE KINASE 357 411 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi06g00302 Lsi11g00177 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g00177 Lsi-Chr11:1848735 Lsi11g00218 Lsi-Chr11:2223292 1.92E-131 dispersed
Lsi11g00177 Lsi-Chr11:1848735 Lsi06g00302 Lsi-Chr6:3461235 2.19E-175 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84010 PF00069 Pkinase 1.40E-62 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00177 K20603 - csv:101206374 591.652