Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00178 ATGACAACCGTGGCGGTTGCCGTTAACGGCGTCCTCGGCGGCAAAGGCGGCGGAGGAAGCCGCCGCGCTGTCAGATGGGCGGTTGAGAATCTCTTGCCGACCGCCGATCGCTTCATATTGGTTCACGTTATGCCCAAAATCACCTTCATCCCCACTCCAATGGGAGATCTTGTGGCTGTCTCAGAACTTGATGCAGATGTGGTAGCTCTTTATGTTCATGATGTGAAACAAAAATATGAACAAATTTTTGTCCCTTTCAAGAAGTTATGTAGAAGAGAAAAGGTAATTTCAAAAACTTTGATTTTGGAGGATGACAATCCTGCCACTGCACTTTTGAGATTTGCTTCTGAATCTGGAATTAAACGCTTGGTTTTGGGTTCTTGTTTTAGAACTTGCATAGCAAGGAAGCTAAAAGGGGATTCAGTACCCTCTGCTATTATGAGAACTGCTCCTAGTTCTTTTGATATTTATGTTATATATAAGAGAAGAGTTATCACACGAACGGCTAGTACTGCTCAATCTACTGAAACCGACTCGAGGCAGTGGATGCTCGGTGACACTGATTACTACAGGGGTTTGAGTGCCGTTAGTGAAAAATCATCGGAAACTTTGTCTTCTTCGTCCTTGTCGATTGGACATCGAAGAGGTGATAGCGTCGAAGTTAACTCTACCGAGCAACTGAACTCTTTGAGCACTCTGACTGAGGAGGAAGATATGCAAGCTGAAGTTGAATCTCTGCAGCTAGAACTAGAGACCACTGTTTCCTTGTACAAACAAGCTTGTGAAGAACTAGTACATGCTCAGAAGAAGGTGAGAGCTCGATTATTATATCGGTTTCGACATAACGTTTTATGGAGCGAGGTTCAGTCACTTACATCAGAATGCCTTGAAGAATCAAGAAAAGTGAATGCTGCTTTGGAAAGGGAACAATCTTTGAGGAAAGTTGCTGCTAAAGAGAAAGCGAAGCACTTGGAAGCCATTAAAGAGCTTGAGGAAGCTAAAGACTTGCTGGCTAAAGAAGCTTATGAAAGGCAGCTGGCTGAGCTTAATGCCTTAAAGGAGTCCGTGGAGAAGCAGAAAATTCTTGATACTCTTCTGACTAATGATAGGAGGTACAGAAGATATACTACTGCCGAAATAGAATCTGCGACAAATTTCTTCGATAAAGTTAACGTGATCGGCGAGGGAGGATACGGGAAAGTCTACAAATGCAGTCTAGATCATACCCCTGTAGCCATTAAGGTTATTCAACACGACATATTCGAGAAAAAAGACGAGTTTCTGAAAGAGGTTGAAATTCTTAGCCAGATACGACATCCACACGTGGTTTTACTGCTTGGAGCTTGTCCCGAGCGAGGTTGTTTGATATATGAATACATGGAAAATGGAAGCTTAGATGACCATATCTTGCTCCGGAAAGGAAAAGCTCCCCTCCCTTGGTACATTAGATTTAGAATAGTTTTTCAAGTAGCTTCTGGCCTTGCATTTTTACACAACTCAAAGCCAGAGCCTATTATTCATAGAGATCTCAAACCAGGTAATATCTTACTGGACAGAAACTTTGTAAGCAAAATCTCAGATGTTGGAATGGCTAAGATCATCGGCGATATCGTGCCAGACAATGTCACGGAGTACCGAAACACCATTCTTGCCGGTACTCTACATTACATGGATCCTGAATATCAGAGAACTGGCACACTCCGGCCAAAGTCAGATACGTATGCACTTGGAGTAACAATTCTGCAGTTGTTGACTGGTCGGCAGCCACACGGTCTTCTTCTCGCTATCGAAAATTCGATCGCAAGCACCTCGCTTGCAGATATTCTAGACAAGTCAATTACTGACTGGCCTCTAGCTGAAGCTGAAGAGCTAGCTCGAGTCGCGCTGAAGTGCTTGAAACTTAGATGCAGGGACAGGCCAGATCTTGAATCTGAAGTTCTTCCGGTCCTAAAAAGGCTTGCTGATTTTGCAGATACTTGTCAAAATGAAGGCAAAGCTCCTGCTAATCCCCCAAGCCACTACTTCTGCCCAATCCTCCAGGAAATCATGGAGGATCCTTATATAGCAGCTGATGGCTTTACTTATGAGTATGTAGCCATTAAAGCATGGCTCGATAAATACGACGTATCCCCGGTGACAAAGCTTAAGCTTCAGCATTCTATGTTTATTCCAAACCACACTCTCCGTTCTGCCATACAAGAGTGGAAATCAAGAGTCACATTTTCATCTTCCTAA 2235 43.53 MTTVAVAVNGVLGGKGGGGSRRAVRWAVENLLPTADRFILVHVMPKITFIPTPMGDLVAVSELDADVVALYVHDVKQKYEQIFVPFKKLCRREKVISKTLILEDDNPATALLRFASESGIKRLVLGSCFRTCIARKLKGDSVPSAIMRTAPSSFDIYVIYKRRVITRTASTAQSTETDSRQWMLGDTDYYRGLSAVSEKSSETLSSSSLSIGHRRGDSVEVNSTEQLNSLSTLTEEEDMQAEVESLQLELETTVSLYKQACEELVHAQKKVRARLLYRFRHNVLWSEVQSLTSECLEESRKVNAALEREQSLRKVAAKEKAKHLEAIKELEEAKDLLAKEAYERQLAELNALKESVEKQKILDTLLTNDRRYRRYTTAEIESATNFFDKVNVIGEGGYGKVYKCSLDHTPVAIKVIQHDIFEKKDEFLKEVEILSQIRHPHVVLLLGACPERGCLIYEYMENGSLDDHILLRKGKAPLPWYIRFRIVFQVASGLAFLHNSKPEPIIHRDLKPGNILLDRNFVSKISDVGMAKIIGDIVPDNVTEYRNTILAGTLHYMDPEYQRTGTLRPKSDTYALGVTILQLLTGRQPHGLLLAIENSIASTSLADILDKSITDWPLAEAEELARVALKCLKLRCRDRPDLESEVLPVLKRLADFADTCQNEGKAPANPPSHYFCPILQEIMEDPYIAADGFTYEYVAIKAWLDKYDVSPVTKLKLQHSMFIPNHTLRSAIQEWKSRVTFSSS 744
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1853251 1856945 - Lsi11G001780.1 Lsi11g00178 673345

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00178 744 SUPERFAMILY RING/U-box 661 738 - -
Lsi11g00178 744 SUPERFAMILY Protein kinase-like (PK-like) 370 643 IPR011009 -
Lsi11g00178 744 SMART serkin_6 387 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00178 744 ProSiteProfiles Protein kinase domain profile. 387 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00178 744 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 16 151 - -
Lsi11g00178 744 Pfam Protein kinase domain 388 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00178 744 CDD STK_N 3 161 - -
Lsi11g00178 744 Pfam Universal stress protein family 19 151 IPR006016 -
Lsi11g00178 744 CDD RING-Ubox_WDSUB1_like 674 714 - -
Lsi11g00178 744 Gene3D Phosphorylase Kinase; domain 1 366 459 - -
Lsi11g00178 744 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 669 741 IPR013083 -
Lsi11g00178 744 Gene3D HUPs 3 154 IPR014729 -
Lsi11g00178 744 PANTHER OS02G0152300 PROTEIN 221 738 - -
Lsi11g00178 744 PANTHER OS02G0152300 PROTEIN 2 210 - -
Lsi11g00178 744 Gene3D Transferase(Phosphotransferase) domain 1 460 666 - -
Lsi11g00178 744 ProSitePatterns Serine/Threonine protein kinases active-site signature. 505 517 IPR008271 GO:0004672|GO:0006468
Lsi11g00178 744 ProSiteProfiles U-box domain profile. 669 742 IPR003613 GO:0004842|GO:0016567
Lsi11g00178 744 Pfam U-box domain 671 736 IPR003613 GO:0004842|GO:0016567
Lsi11g00178 744 SMART Ubox_2 673 735 IPR003613 GO:0004842|GO:0016567
Lsi11g00178 744 Coils Coil 313 362 - -
Lsi11g00178 744 ProSitePatterns Protein kinases ATP-binding region signature. 393 414 IPR017441 GO:0005524
Lsi11g00178 744 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 221 738 - -
Lsi11g00178 744 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 2 210 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00178 - - - cpep:111805862 1214.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g02044 Lsi-Chr5:27399888 Lsi11g00178 Lsi-Chr11:1853251 1.25E-105 dispersed
Lsi10g01375 Lsi-Chr10:17894271 Lsi11g00178 Lsi-Chr11:1853251 1.05E-07 dispersed
Lsi11g00178 Lsi-Chr11:1853251 Lsi11g00823 Lsi-Chr11:10203339 2.31E-121 dispersed
Lsi06g01262 Lsi-Chr6:23207332 Lsi11g00178 Lsi-Chr11:1853251 2.36E-14 transposed
Lsi09g00480 Lsi-Chr9:5047100 Lsi11g00178 Lsi-Chr11:1853251 4.45E-16 transposed
Lsi11g00178 Lsi-Chr11:1853251 Lsi02g02918 Lsi-Chr2:35416813 2.49E-148 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g145 . Blo16g00977 Bda01g01340 Bda11g01037 . . . . . . Cma05g01403 Cma12g00651 Car05g01319 Car12g00600 . . . . . . . . . . Cla11g00152 . . . . . . . . . . . Csa02g00037 Chy05g01451 . . . . . . Bpe13g01247 . Bma06g00882 . Cmo05g01403 Cmo12g00590 . . . . Cpe11g01178 . Bhi06g01630 . . . . . . . . . . . . . Lsi11g00178 . . Cme05g02054
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi11g00178 . 2 738 Plant U-box Gene Family AT5G57035 52.5 8.7e-226 780.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008876 1 1 1 2 1 0 2 1 1 1 1 0 1 1 1 1 0 0 1 0 1 1 0 1 1 1 1 1 2 1 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84011 PF00069 Pkinase 1.90E-41 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g00178 Lsi_Chr11 FPKM 29.164673 35.218624 10.158663 9.408771 10.707647 9.067184 10.32528 25.038122 24.853802 26.121071