Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00178 ATGACAACCGTGGCGGTTGCCGTTAACGGCGTCCTCGGCGGCAAAGGCGGCGGAGGAAGCCGCCGCGCTGTCAGATGGGCGGTTGAGAATCTCTTGCCGACCGCCGATCGCTTCATATTGGTTCACGTTATGCCCAAAATCACCTTCATCCCCACTCCAATGGGAGATCTTGTGGCTGTCTCAGAACTTGATGCAGATGTGGTAGCTCTTTATGTTCATGATGTGAAACAAAAATATGAACAAATTTTTGTCCCTTTCAAGAAGTTATGTAGAAGAGAAAAGGTAATTTCAAAAACTTTGATTTTGGAGGATGACAATCCTGCCACTGCACTTTTGAGATTTGCTTCTGAATCTGGAATTAAACGCTTGGTTTTGGGTTCTTGTTTTAGAACTTGCATAGCAAGGAAGCTAAAAGGGGATTCAGTACCCTCTGCTATTATGAGAACTGCTCCTAGTTCTTTTGATATTTATGTTATATATAAGAGAAGAGTTATCACACGAACGGCTAGTACTGCTCAATCTACTGAAACCGACTCGAGGCAGTGGATGCTCGGTGACACTGATTACTACAGGGGTTTGAGTGCCGTTAGTGAAAAATCATCGGAAACTTTGTCTTCTTCGTCCTTGTCGATTGGACATCGAAGAGGTGATAGCGTCGAAGTTAACTCTACCGAGCAACTGAACTCTTTGAGCACTCTGACTGAGGAGGAAGATATGCAAGCTGAAGTTGAATCTCTGCAGCTAGAACTAGAGACCACTGTTTCCTTGTACAAACAAGCTTGTGAAGAACTAGTACATGCTCAGAAGAAGGTGAGAGCTCGATTATTATATCGGTTTCGACATAACGTTTTATGGAGCGAGGTTCAGTCACTTACATCAGAATGCCTTGAAGAATCAAGAAAAGTGAATGCTGCTTTGGAAAGGGAACAATCTTTGAGGAAAGTTGCTGCTAAAGAGAAAGCGAAGCACTTGGAAGCCATTAAAGAGCTTGAGGAAGCTAAAGACTTGCTGGCTAAAGAAGCTTATGAAAGGCAGCTGGCTGAGCTTAATGCCTTAAAGGAGTCCGTGGAGAAGCAGAAAATTCTTGATACTCTTCTGACTAATGATAGGAGGTACAGAAGATATACTACTGCCGAAATAGAATCTGCGACAAATTTCTTCGATAAAGTTAACGTGATCGGCGAGGGAGGATACGGGAAAGTCTACAAATGCAGTCTAGATCATACCCCTGTAGCCATTAAGGTTATTCAACACGACATATTCGAGAAAAAAGACGAGTTTCTGAAAGAGGTTGAAATTCTTAGCCAGATACGACATCCACACGTGGTTTTACTGCTTGGAGCTTGTCCCGAGCGAGGTTGTTTGATATATGAATACATGGAAAATGGAAGCTTAGATGACCATATCTTGCTCCGGAAAGGAAAAGCTCCCCTCCCTTGGTACATTAGATTTAGAATAGTTTTTCAAGTAGCTTCTGGCCTTGCATTTTTACACAACTCAAAGCCAGAGCCTATTATTCATAGAGATCTCAAACCAGGTAATATCTTACTGGACAGAAACTTTGTAAGCAAAATCTCAGATGTTGGAATGGCTAAGATCATCGGCGATATCGTGCCAGACAATGTCACGGAGTACCGAAACACCATTCTTGCCGGTACTCTACATTACATGGATCCTGAATATCAGAGAACTGGCACACTCCGGCCAAAGTCAGATACGTATGCACTTGGAGTAACAATTCTGCAGTTGTTGACTGGTCGGCAGCCACACGGTCTTCTTCTCGCTATCGAAAATTCGATCGCAAGCACCTCGCTTGCAGATATTCTAGACAAGTCAATTACTGACTGGCCTCTAGCTGAAGCTGAAGAGCTAGCTCGAGTCGCGCTGAAGTGCTTGAAACTTAGATGCAGGGACAGGCCAGATCTTGAATCTGAAGTTCTTCCGGTCCTAAAAAGGCTTGCTGATTTTGCAGATACTTGTCAAAATGAAGGCAAAGCTCCTGCTAATCCCCCAAGCCACTACTTCTGCCCAATCCTCCAGGAAATCATGGAGGATCCTTATATAGCAGCTGATGGCTTTACTTATGAGTATGTAGCCATTAAAGCATGGCTCGATAAATACGACGTATCCCCGGTGACAAAGCTTAAGCTTCAGCATTCTATGTTTATTCCAAACCACACTCTCCGTTCTGCCATACAAGAGTGGAAATCAAGAGTCACATTTTCATCTTCCTAA 2235 43.53 MTTVAVAVNGVLGGKGGGGSRRAVRWAVENLLPTADRFILVHVMPKITFIPTPMGDLVAVSELDADVVALYVHDVKQKYEQIFVPFKKLCRREKVISKTLILEDDNPATALLRFASESGIKRLVLGSCFRTCIARKLKGDSVPSAIMRTAPSSFDIYVIYKRRVITRTASTAQSTETDSRQWMLGDTDYYRGLSAVSEKSSETLSSSSLSIGHRRGDSVEVNSTEQLNSLSTLTEEEDMQAEVESLQLELETTVSLYKQACEELVHAQKKVRARLLYRFRHNVLWSEVQSLTSECLEESRKVNAALEREQSLRKVAAKEKAKHLEAIKELEEAKDLLAKEAYERQLAELNALKESVEKQKILDTLLTNDRRYRRYTTAEIESATNFFDKVNVIGEGGYGKVYKCSLDHTPVAIKVIQHDIFEKKDEFLKEVEILSQIRHPHVVLLLGACPERGCLIYEYMENGSLDDHILLRKGKAPLPWYIRFRIVFQVASGLAFLHNSKPEPIIHRDLKPGNILLDRNFVSKISDVGMAKIIGDIVPDNVTEYRNTILAGTLHYMDPEYQRTGTLRPKSDTYALGVTILQLLTGRQPHGLLLAIENSIASTSLADILDKSITDWPLAEAEELARVALKCLKLRCRDRPDLESEVLPVLKRLADFADTCQNEGKAPANPPSHYFCPILQEIMEDPYIAADGFTYEYVAIKAWLDKYDVSPVTKLKLQHSMFIPNHTLRSAIQEWKSRVTFSSS 744
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1853251 1856945 - Lsi11G001780.1 Lsi11g00178 673345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00178 744 SUPERFAMILY RING/U-box 661 738 - -
Lsi11g00178 744 SUPERFAMILY Protein kinase-like (PK-like) 370 643 IPR011009 -
Lsi11g00178 744 SMART serkin_6 387 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00178 744 ProSiteProfiles Protein kinase domain profile. 387 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00178 744 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 16 151 - -
Lsi11g00178 744 Pfam Protein kinase domain 388 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00178 744 CDD STK_N 3 161 - -
Lsi11g00178 744 Pfam Universal stress protein family 19 151 IPR006016 -
Lsi11g00178 744 CDD RING-Ubox_WDSUB1_like 674 714 - -
Lsi11g00178 744 Gene3D Phosphorylase Kinase; domain 1 366 459 - -
Lsi11g00178 744 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 669 741 IPR013083 -
Lsi11g00178 744 Gene3D HUPs 3 154 IPR014729 -
Lsi11g00178 744 PANTHER OS02G0152300 PROTEIN 221 738 - -
Lsi11g00178 744 PANTHER OS02G0152300 PROTEIN 2 210 - -
Lsi11g00178 744 Gene3D Transferase(Phosphotransferase) domain 1 460 666 - -
Lsi11g00178 744 ProSitePatterns Serine/Threonine protein kinases active-site signature. 505 517 IPR008271 GO:0004672|GO:0006468
Lsi11g00178 744 ProSiteProfiles U-box domain profile. 669 742 IPR003613 GO:0004842|GO:0016567
Lsi11g00178 744 Pfam U-box domain 671 736 IPR003613 GO:0004842|GO:0016567
Lsi11g00178 744 SMART Ubox_2 673 735 IPR003613 GO:0004842|GO:0016567
Lsi11g00178 744 Coils Coil 313 362 - -
Lsi11g00178 744 ProSitePatterns Protein kinases ATP-binding region signature. 393 414 IPR017441 GO:0005524
Lsi11g00178 744 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 221 738 - -
Lsi11g00178 744 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 2 210 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g02044 Lsi-Chr5:27399888 Lsi11g00178 Lsi-Chr11:1853251 1.25E-105 dispersed
Lsi10g01375 Lsi-Chr10:17894271 Lsi11g00178 Lsi-Chr11:1853251 1.05E-07 dispersed
Lsi11g00178 Lsi-Chr11:1853251 Lsi11g00823 Lsi-Chr11:10203339 2.31E-121 dispersed
Lsi06g01262 Lsi-Chr6:23207332 Lsi11g00178 Lsi-Chr11:1853251 2.36E-14 transposed
Lsi09g00480 Lsi-Chr9:5047100 Lsi11g00178 Lsi-Chr11:1853251 4.45E-16 transposed
Lsi11g00178 Lsi-Chr11:1853251 Lsi02g02918 Lsi-Chr2:35416813 2.49E-148 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84011 PF00069 Pkinase 1.90E-41 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00178 - - cpep:111805862 1214.91