Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g00178 | ATGACAACCGTGGCGGTTGCCGTTAACGGCGTCCTCGGCGGCAAAGGCGGCGGAGGAAGCCGCCGCGCTGTCAGATGGGCGGTTGAGAATCTCTTGCCGACCGCCGATCGCTTCATATTGGTTCACGTTATGCCCAAAATCACCTTCATCCCCACTCCAATGGGAGATCTTGTGGCTGTCTCAGAACTTGATGCAGATGTGGTAGCTCTTTATGTTCATGATGTGAAACAAAAATATGAACAAATTTTTGTCCCTTTCAAGAAGTTATGTAGAAGAGAAAAGGTAATTTCAAAAACTTTGATTTTGGAGGATGACAATCCTGCCACTGCACTTTTGAGATTTGCTTCTGAATCTGGAATTAAACGCTTGGTTTTGGGTTCTTGTTTTAGAACTTGCATAGCAAGGAAGCTAAAAGGGGATTCAGTACCCTCTGCTATTATGAGAACTGCTCCTAGTTCTTTTGATATTTATGTTATATATAAGAGAAGAGTTATCACACGAACGGCTAGTACTGCTCAATCTACTGAAACCGACTCGAGGCAGTGGATGCTCGGTGACACTGATTACTACAGGGGTTTGAGTGCCGTTAGTGAAAAATCATCGGAAACTTTGTCTTCTTCGTCCTTGTCGATTGGACATCGAAGAGGTGATAGCGTCGAAGTTAACTCTACCGAGCAACTGAACTCTTTGAGCACTCTGACTGAGGAGGAAGATATGCAAGCTGAAGTTGAATCTCTGCAGCTAGAACTAGAGACCACTGTTTCCTTGTACAAACAAGCTTGTGAAGAACTAGTACATGCTCAGAAGAAGGTGAGAGCTCGATTATTATATCGGTTTCGACATAACGTTTTATGGAGCGAGGTTCAGTCACTTACATCAGAATGCCTTGAAGAATCAAGAAAAGTGAATGCTGCTTTGGAAAGGGAACAATCTTTGAGGAAAGTTGCTGCTAAAGAGAAAGCGAAGCACTTGGAAGCCATTAAAGAGCTTGAGGAAGCTAAAGACTTGCTGGCTAAAGAAGCTTATGAAAGGCAGCTGGCTGAGCTTAATGCCTTAAAGGAGTCCGTGGAGAAGCAGAAAATTCTTGATACTCTTCTGACTAATGATAGGAGGTACAGAAGATATACTACTGCCGAAATAGAATCTGCGACAAATTTCTTCGATAAAGTTAACGTGATCGGCGAGGGAGGATACGGGAAAGTCTACAAATGCAGTCTAGATCATACCCCTGTAGCCATTAAGGTTATTCAACACGACATATTCGAGAAAAAAGACGAGTTTCTGAAAGAGGTTGAAATTCTTAGCCAGATACGACATCCACACGTGGTTTTACTGCTTGGAGCTTGTCCCGAGCGAGGTTGTTTGATATATGAATACATGGAAAATGGAAGCTTAGATGACCATATCTTGCTCCGGAAAGGAAAAGCTCCCCTCCCTTGGTACATTAGATTTAGAATAGTTTTTCAAGTAGCTTCTGGCCTTGCATTTTTACACAACTCAAAGCCAGAGCCTATTATTCATAGAGATCTCAAACCAGGTAATATCTTACTGGACAGAAACTTTGTAAGCAAAATCTCAGATGTTGGAATGGCTAAGATCATCGGCGATATCGTGCCAGACAATGTCACGGAGTACCGAAACACCATTCTTGCCGGTACTCTACATTACATGGATCCTGAATATCAGAGAACTGGCACACTCCGGCCAAAGTCAGATACGTATGCACTTGGAGTAACAATTCTGCAGTTGTTGACTGGTCGGCAGCCACACGGTCTTCTTCTCGCTATCGAAAATTCGATCGCAAGCACCTCGCTTGCAGATATTCTAGACAAGTCAATTACTGACTGGCCTCTAGCTGAAGCTGAAGAGCTAGCTCGAGTCGCGCTGAAGTGCTTGAAACTTAGATGCAGGGACAGGCCAGATCTTGAATCTGAAGTTCTTCCGGTCCTAAAAAGGCTTGCTGATTTTGCAGATACTTGTCAAAATGAAGGCAAAGCTCCTGCTAATCCCCCAAGCCACTACTTCTGCCCAATCCTCCAGGAAATCATGGAGGATCCTTATATAGCAGCTGATGGCTTTACTTATGAGTATGTAGCCATTAAAGCATGGCTCGATAAATACGACGTATCCCCGGTGACAAAGCTTAAGCTTCAGCATTCTATGTTTATTCCAAACCACACTCTCCGTTCTGCCATACAAGAGTGGAAATCAAGAGTCACATTTTCATCTTCCTAA | 2235 | 43.53 | MTTVAVAVNGVLGGKGGGGSRRAVRWAVENLLPTADRFILVHVMPKITFIPTPMGDLVAVSELDADVVALYVHDVKQKYEQIFVPFKKLCRREKVISKTLILEDDNPATALLRFASESGIKRLVLGSCFRTCIARKLKGDSVPSAIMRTAPSSFDIYVIYKRRVITRTASTAQSTETDSRQWMLGDTDYYRGLSAVSEKSSETLSSSSLSIGHRRGDSVEVNSTEQLNSLSTLTEEEDMQAEVESLQLELETTVSLYKQACEELVHAQKKVRARLLYRFRHNVLWSEVQSLTSECLEESRKVNAALEREQSLRKVAAKEKAKHLEAIKELEEAKDLLAKEAYERQLAELNALKESVEKQKILDTLLTNDRRYRRYTTAEIESATNFFDKVNVIGEGGYGKVYKCSLDHTPVAIKVIQHDIFEKKDEFLKEVEILSQIRHPHVVLLLGACPERGCLIYEYMENGSLDDHILLRKGKAPLPWYIRFRIVFQVASGLAFLHNSKPEPIIHRDLKPGNILLDRNFVSKISDVGMAKIIGDIVPDNVTEYRNTILAGTLHYMDPEYQRTGTLRPKSDTYALGVTILQLLTGRQPHGLLLAIENSIASTSLADILDKSITDWPLAEAEELARVALKCLKLRCRDRPDLESEVLPVLKRLADFADTCQNEGKAPANPPSHYFCPILQEIMEDPYIAADGFTYEYVAIKAWLDKYDVSPVTKLKLQHSMFIPNHTLRSAIQEWKSRVTFSSS | 744 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1853251 | 1856945 | - | Lsi11G001780.1 | Lsi11g00178 | 673345 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g00178 | 744 | SUPERFAMILY | RING/U-box | 661 | 738 | - | - | |
Lsi11g00178 | 744 | SUPERFAMILY | Protein kinase-like (PK-like) | 370 | 643 | IPR011009 | - | |
Lsi11g00178 | 744 | SMART | serkin_6 | 387 | 650 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi11g00178 | 744 | ProSiteProfiles | Protein kinase domain profile. | 387 | 650 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi11g00178 | 744 | SUPERFAMILY | Adenine nucleotide alpha hydrolases-like | 16 | 151 | - | - | |
Lsi11g00178 | 744 | Pfam | Protein kinase domain | 388 | 643 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi11g00178 | 744 | CDD | STK_N | 3 | 161 | - | - | |
Lsi11g00178 | 744 | Pfam | Universal stress protein family | 19 | 151 | IPR006016 | - | |
Lsi11g00178 | 744 | CDD | RING-Ubox_WDSUB1_like | 674 | 714 | - | - | |
Lsi11g00178 | 744 | Gene3D | Phosphorylase Kinase; domain 1 | 366 | 459 | - | - | |
Lsi11g00178 | 744 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 669 | 741 | IPR013083 | - | |
Lsi11g00178 | 744 | Gene3D | HUPs | 3 | 154 | IPR014729 | - | |
Lsi11g00178 | 744 | PANTHER | OS02G0152300 PROTEIN | 221 | 738 | - | - | |
Lsi11g00178 | 744 | PANTHER | OS02G0152300 PROTEIN | 2 | 210 | - | - | |
Lsi11g00178 | 744 | Gene3D | Transferase(Phosphotransferase) domain 1 | 460 | 666 | - | - | |
Lsi11g00178 | 744 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 505 | 517 | IPR008271 | GO:0004672|GO:0006468 | |
Lsi11g00178 | 744 | ProSiteProfiles | U-box domain profile. | 669 | 742 | IPR003613 | GO:0004842|GO:0016567 | |
Lsi11g00178 | 744 | Pfam | U-box domain | 671 | 736 | IPR003613 | GO:0004842|GO:0016567 | |
Lsi11g00178 | 744 | SMART | Ubox_2 | 673 | 735 | IPR003613 | GO:0004842|GO:0016567 | |
Lsi11g00178 | 744 | Coils | Coil | 313 | 362 | - | - | |
Lsi11g00178 | 744 | ProSitePatterns | Protein kinases ATP-binding region signature. | 393 | 414 | IPR017441 | GO:0005524 | |
Lsi11g00178 | 744 | PANTHER | U-BOX DOMAIN-CONTAINING PROTEIN 34 | 221 | 738 | - | - | |
Lsi11g00178 | 744 | PANTHER | U-BOX DOMAIN-CONTAINING PROTEIN 34 | 2 | 210 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi05g02044 | Lsi-Chr5:27399888 | Lsi11g00178 | Lsi-Chr11:1853251 | 1.25E-105 | dispersed | |
Lsi10g01375 | Lsi-Chr10:17894271 | Lsi11g00178 | Lsi-Chr11:1853251 | 1.05E-07 | dispersed | |
Lsi11g00178 | Lsi-Chr11:1853251 | Lsi11g00823 | Lsi-Chr11:10203339 | 2.31E-121 | dispersed | |
Lsi06g01262 | Lsi-Chr6:23207332 | Lsi11g00178 | Lsi-Chr11:1853251 | 2.36E-14 | transposed | |
Lsi09g00480 | Lsi-Chr9:5047100 | Lsi11g00178 | Lsi-Chr11:1853251 | 4.45E-16 | transposed | |
Lsi11g00178 | Lsi-Chr11:1853251 | Lsi02g02918 | Lsi-Chr2:35416813 | 2.49E-148 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
84011 | PF00069 | Pkinase | 1.90E-41 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g00178 | - | - | cpep:111805862 | 1214.91 |