Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00204 ATGATCGTCGGCGAGCAGCCCAAACGCCCGAATCCGACCGTTCAGGTTCCACCGTGGACGTTTATGGAGGATTCGGCGATCGATGTGTACAGTCATTCGCCGGGGAGCGGTGGCAGCAGCGGTTCCGTTAAGTGCGATGGATGTTCCAGCGGAGGCGGATACTCTCCTTATTATCTGCAGGAAGCATTGGCGATGCTGAAGCGGTATCTTCCGTCTAATGAGGCGGAGATGGACTCGGATTTTGATGTTTCAGGTCGGGAGTTGGATTCTCCGGTGGATGCGTACTCTTCCGATCAGTTTCGAATGTATGAGTTCAAGATTAAGAAGTGCACGAGAGGAAGATCGCACGACTGGACTGAGTGTCCGTTTGCTCATCCCGGCGAGAAGGCTCGCCGGAGAGATCCGAGGAGGTATTACTATTCAGGTACGGCGTGTGCGGATTTTCGGAAAGGGAGCTGTATGAAAGGAGATGCGTGTGAGTTCGCTCATGGAGTTTTCGAGTGCTGGCTTCATCCGGCTCGCTATCGGACTCAGCCATGCAAGGATGGCACGAGTTGCCGGAGAAGAGTTTGTTTCTTCGCTCATACGCCGGATCAACTTAGGGTTTTGCCTCAACAAAGCCCTCGGAGTACGAGTTCCATCCCTTCGTACGACGGATCGCCTCTCCGACAAGCAATTGAGGCATGTGCAAAGCAAATACCCTATCTATCTTCTCCAGGAACATCGCCGCCAGTATCTCCTCGAATCGAGTCTCCACCTCAATCGCCGATGATTAAGTCACTAAATCGACCTCACGGAACAAGTTCGATCAACGAAATGGTTGCATCACTGCGAAGTTTACAGCTCAATAAGGAACTCTGTAAGGTACAATCTCCTTCTTCCTCGTGGAATGTTCAAGTCGGATCTCCTGTATTCGGATCTCCAAAGGAATCCACCGCTCGATCCGGTTTATGTAGCCTTCCAGATACTCCGACTCGTCCAGTTAGCCGATATCTCGATTTCTGGGACCTAGGCTGCGGAGAGGAACCGGCAATGGAGCGAGTGGAGTCCGGAAGAGATCTTCGTGCAAAAATGTTTGAGAAATTGAGGAAGGAGAACTCCGTCGGCTGCGGCGATCAGGACAAATACAGCGGCAACGGAGGTCTGGATGTCGGTTGGATCTCGGAGCTCCTCAAGTAA 1179 52.16 MIVGEQPKRPNPTVQVPPWTFMEDSAIDVYSHSPGSGGSSGSVKCDGCSSGGGYSPYYLQEALAMLKRYLPSNEAEMDSDFDVSGRELDSPVDAYSSDQFRMYEFKIKKCTRGRSHDWTECPFAHPGEKARRRDPRRYYYSGTACADFRKGSCMKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPDQLRVLPQQSPRSTSSIPSYDGSPLRQAIEACAKQIPYLSSPGTSPPVSPRIESPPQSPMIKSLNRPHGTSSINEMVASLRSLQLNKELCKVQSPSSSWNVQVGSPVFGSPKESTARSGLCSLPDTPTRPVSRYLDFWDLGCGEEPAMERVESGRDLRAKMFEKLRKENSVGCGDQDKYSGNGGLDVGWISELLK 392
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 2077559 2078737 - Lsi11G002040.1 Lsi11g00204 673371
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00204 392 Gene3D - 103 164 - -
Lsi11g00204 392 PANTHER UNKEMPT FAMILY MEMBER 8 391 IPR045234 -
Lsi11g00204 392 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 8 391 - -
Lsi11g00204 392 SMART c3hfinal6 139 165 IPR000571 GO:0046872
Lsi11g00204 392 SMART c3hfinal6 174 197 IPR000571 GO:0046872
Lsi11g00204 392 SUPERFAMILY CCCH zinc finger 138 168 IPR036855 GO:0046872
Lsi11g00204 392 MobiDBLite consensus disorder prediction 237 256 - -
Lsi11g00204 392 ProSiteProfiles Zinc finger C3H1-type profile. 139 166 IPR000571 GO:0046872
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01443 Lsi-Chr4:22158906 Lsi11g00204 Lsi-Chr11:2077559 1.83E-102 dispersed
Lsi08g01560 Lsi-Chr8:23679943 Lsi11g00204 Lsi-Chr11:2077559 1.21E-72 dispersed
Lsi10g01438 Lsi-Chr10:18464037 Lsi11g00204 Lsi-Chr11:2077559 2.06E-46 dispersed
Lsi11g00204 Lsi-Chr11:2077559 Lsi11g01705 Lsi-Chr11:25202477 3.90E-58 dispersed
Lsi11g00204 Lsi-Chr11:2077559 Lsi06g00248 Lsi-Chr6:2788692 1.13E-160 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26134 None None None None Lsi TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00204 - - csv:101221692 704.901