Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi11g00204 | ATGATCGTCGGCGAGCAGCCCAAACGCCCGAATCCGACCGTTCAGGTTCCACCGTGGACGTTTATGGAGGATTCGGCGATCGATGTGTACAGTCATTCGCCGGGGAGCGGTGGCAGCAGCGGTTCCGTTAAGTGCGATGGATGTTCCAGCGGAGGCGGATACTCTCCTTATTATCTGCAGGAAGCATTGGCGATGCTGAAGCGGTATCTTCCGTCTAATGAGGCGGAGATGGACTCGGATTTTGATGTTTCAGGTCGGGAGTTGGATTCTCCGGTGGATGCGTACTCTTCCGATCAGTTTCGAATGTATGAGTTCAAGATTAAGAAGTGCACGAGAGGAAGATCGCACGACTGGACTGAGTGTCCGTTTGCTCATCCCGGCGAGAAGGCTCGCCGGAGAGATCCGAGGAGGTATTACTATTCAGGTACGGCGTGTGCGGATTTTCGGAAAGGGAGCTGTATGAAAGGAGATGCGTGTGAGTTCGCTCATGGAGTTTTCGAGTGCTGGCTTCATCCGGCTCGCTATCGGACTCAGCCATGCAAGGATGGCACGAGTTGCCGGAGAAGAGTTTGTTTCTTCGCTCATACGCCGGATCAACTTAGGGTTTTGCCTCAACAAAGCCCTCGGAGTACGAGTTCCATCCCTTCGTACGACGGATCGCCTCTCCGACAAGCAATTGAGGCATGTGCAAAGCAAATACCCTATCTATCTTCTCCAGGAACATCGCCGCCAGTATCTCCTCGAATCGAGTCTCCACCTCAATCGCCGATGATTAAGTCACTAAATCGACCTCACGGAACAAGTTCGATCAACGAAATGGTTGCATCACTGCGAAGTTTACAGCTCAATAAGGAACTCTGTAAGGTACAATCTCCTTCTTCCTCGTGGAATGTTCAAGTCGGATCTCCTGTATTCGGATCTCCAAAGGAATCCACCGCTCGATCCGGTTTATGTAGCCTTCCAGATACTCCGACTCGTCCAGTTAGCCGATATCTCGATTTCTGGGACCTAGGCTGCGGAGAGGAACCGGCAATGGAGCGAGTGGAGTCCGGAAGAGATCTTCGTGCAAAAATGTTTGAGAAATTGAGGAAGGAGAACTCCGTCGGCTGCGGCGATCAGGACAAATACAGCGGCAACGGAGGTCTGGATGTCGGTTGGATCTCGGAGCTCCTCAAGTAA | 1179 | 52.16 | MIVGEQPKRPNPTVQVPPWTFMEDSAIDVYSHSPGSGGSSGSVKCDGCSSGGGYSPYYLQEALAMLKRYLPSNEAEMDSDFDVSGRELDSPVDAYSSDQFRMYEFKIKKCTRGRSHDWTECPFAHPGEKARRRDPRRYYYSGTACADFRKGSCMKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPDQLRVLPQQSPRSTSSIPSYDGSPLRQAIEACAKQIPYLSSPGTSPPVSPRIESPPQSPMIKSLNRPHGTSSINEMVASLRSLQLNKELCKVQSPSSSWNVQVGSPVFGSPKESTARSGLCSLPDTPTRPVSRYLDFWDLGCGEEPAMERVESGRDLRAKMFEKLRKENSVGCGDQDKYSGNGGLDVGWISELLK | 392 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 2077559 | 2078737 | - | Lsi11G002040.1 | Lsi11g00204 | 673371 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi11g00204 | 392 | Gene3D | - | 103 | 164 | - | - | |
| Lsi11g00204 | 392 | PANTHER | UNKEMPT FAMILY MEMBER | 8 | 391 | IPR045234 | - | |
| Lsi11g00204 | 392 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 | 8 | 391 | - | - | |
| Lsi11g00204 | 392 | SMART | c3hfinal6 | 139 | 165 | IPR000571 | GO:0046872 | |
| Lsi11g00204 | 392 | SMART | c3hfinal6 | 174 | 197 | IPR000571 | GO:0046872 | |
| Lsi11g00204 | 392 | SUPERFAMILY | CCCH zinc finger | 138 | 168 | IPR036855 | GO:0046872 | |
| Lsi11g00204 | 392 | MobiDBLite | consensus disorder prediction | 237 | 256 | - | - | |
| Lsi11g00204 | 392 | ProSiteProfiles | Zinc finger C3H1-type profile. | 139 | 166 | IPR000571 | GO:0046872 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi04g01443 | Lsi-Chr4:22158906 | Lsi11g00204 | Lsi-Chr11:2077559 | 1.83E-102 | dispersed | |
| Lsi08g01560 | Lsi-Chr8:23679943 | Lsi11g00204 | Lsi-Chr11:2077559 | 1.21E-72 | dispersed | |
| Lsi10g01438 | Lsi-Chr10:18464037 | Lsi11g00204 | Lsi-Chr11:2077559 | 2.06E-46 | dispersed | |
| Lsi11g00204 | Lsi-Chr11:2077559 | Lsi11g01705 | Lsi-Chr11:25202477 | 3.90E-58 | dispersed | |
| Lsi11g00204 | Lsi-Chr11:2077559 | Lsi06g00248 | Lsi-Chr6:2788692 | 1.13E-160 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 26134 | None | None | None | None | Lsi | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi11g00204 | - | - | csv:101221692 | 704.901 |