Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g00210 | ATGAAGATCGTGGAATTGGAAGATGCTGGGAATGATCGAGAAAATGAATTCGGTAGTGGTCAGATTGTGATGGTCGATGCCAAAAGAGCGTTGGTTGGGGCTGGGGCTCGAATCTTGTTTTACCCTACCCTTTTGTATAACGTTCTTCGGAACAAAATGGAAGCTGAATTCAGATGGTGGGATGAAGTTGATCAGTTTCTTTTGCTGGGTGCAGTGCCCTTCCCCAAAGACGTCCCAAGATTGAAGAAGCTTGGTGTTGGCGGTGTTATCACTCTCAATGAACCTTATGAAACACTAGTTCCATCTTCTTTGTATTATCGCCATGGAATTGACCACTTAAAGATCCCGACGAGAGATTATTGTTTTGCTCCTAAATTTTCTGATATTAGCCGAGCTGTTGACTTTATTCACAGAAATGCATCATCTGGTAAAACGACATACGTTCATTGTAAAGCAGGACGAGGAAGGAGCACGACCATTGTGCTTTGCTATTTGGTCAAATATAAGCACATGACCCCATCTGCTGCGCTGGAGTACGTACGCTCTAGAAGACCACGGGTGTTGCTCGCCCCATCACAGTGGGAGGCTGTTCAAGAATACAGCAACCGCGGACCCATTACAAGTTCTAGCTCACCCTCAGGAGGAGATGCAGTCCTCATTACAAAAGACGATCTGGAAGGATATCACGGTACATGCATCGACAGTGCGGGTAGAGAACTTGCAGTAGTCCCTAGGATGGGTAAGTCAAAGCCAATGATAGCAAGGTTGTCCTGCCTCTTTTCCTCTTTGATAGTTCATGGAAGTACTGGATCTCTCATCAAGCGTCTGCCCGTACCTGAGGCTCGTGCTTGTTGA | 855 | 46.2 | MKIVELEDAGNDRENEFGSGQIVMVDAKRALVGAGARILFYPTLLYNVLRNKMEAEFRWWDEVDQFLLLGAVPFPKDVPRLKKLGVGGVITLNEPYETLVPSSLYYRHGIDHLKIPTRDYCFAPKFSDISRAVDFIHRNASSGKTTYVHCKAGRGRSTTIVLCYLVKYKHMTPSAALEYVRSRRPRVLLAPSQWEAVQEYSNRGPITSSSSPSGGDAVLITKDDLEGYHGTCIDSAGRELAVVPRMGKSKPMIARLSCLFSSLIVHGSTGSLIKRLPVPEARAC | 284 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2164830 | 2167840 | - | Lsi11G002100.1 | Lsi11g00210 | 673377 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g00210 | 284 | CDD | PTPMT1 | 59 | 203 | IPR044596 | GO:0004721 | |
Lsi11g00210 | 284 | PANTHER | - | 1 | 284 | - | - | |
Lsi11g00210 | 284 | PANTHER | OS01G0739200 PROTEIN | 1 | 284 | - | - | |
Lsi11g00210 | 284 | SMART | dsp_5 | 62 | 203 | IPR020422 | GO:0006470|GO:0008138 | |
Lsi11g00210 | 284 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 148 | 158 | IPR016130 | GO:0016311|GO:0016791 | |
Lsi11g00210 | 284 | ProSiteProfiles | Dual specificity protein phosphatase domain profile. | 59 | 206 | IPR020422 | GO:0006470|GO:0008138 | |
Lsi11g00210 | 284 | Pfam | Dual specificity phosphatase, catalytic domain | 99 | 202 | IPR000340 | GO:0008138|GO:0016311 | |
Lsi11g00210 | 284 | Gene3D | Protein tyrosine phosphatase superfamily | 59 | 204 | IPR029021 | - | |
Lsi11g00210 | 284 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 127 | 195 | IPR000387 | GO:0016311|GO:0016791 | |
Lsi11g00210 | 284 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 52 | 201 | IPR029021 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi07g01277 | Lsi-Chr7:18609281 | Lsi11g00210 | Lsi-Chr11:2164830 | 3.51E-76 | dispersed | |
Lsi11g00210 | Lsi-Chr11:2164830 | Lsi11g01661 | Lsi-Chr11:24894389 | 2.05E-06 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g00210 | - | - | bhj:120080407 | 545.814 |