Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00210 ATGAAGATCGTGGAATTGGAAGATGCTGGGAATGATCGAGAAAATGAATTCGGTAGTGGTCAGATTGTGATGGTCGATGCCAAAAGAGCGTTGGTTGGGGCTGGGGCTCGAATCTTGTTTTACCCTACCCTTTTGTATAACGTTCTTCGGAACAAAATGGAAGCTGAATTCAGATGGTGGGATGAAGTTGATCAGTTTCTTTTGCTGGGTGCAGTGCCCTTCCCCAAAGACGTCCCAAGATTGAAGAAGCTTGGTGTTGGCGGTGTTATCACTCTCAATGAACCTTATGAAACACTAGTTCCATCTTCTTTGTATTATCGCCATGGAATTGACCACTTAAAGATCCCGACGAGAGATTATTGTTTTGCTCCTAAATTTTCTGATATTAGCCGAGCTGTTGACTTTATTCACAGAAATGCATCATCTGGTAAAACGACATACGTTCATTGTAAAGCAGGACGAGGAAGGAGCACGACCATTGTGCTTTGCTATTTGGTCAAATATAAGCACATGACCCCATCTGCTGCGCTGGAGTACGTACGCTCTAGAAGACCACGGGTGTTGCTCGCCCCATCACAGTGGGAGGCTGTTCAAGAATACAGCAACCGCGGACCCATTACAAGTTCTAGCTCACCCTCAGGAGGAGATGCAGTCCTCATTACAAAAGACGATCTGGAAGGATATCACGGTACATGCATCGACAGTGCGGGTAGAGAACTTGCAGTAGTCCCTAGGATGGGTAAGTCAAAGCCAATGATAGCAAGGTTGTCCTGCCTCTTTTCCTCTTTGATAGTTCATGGAAGTACTGGATCTCTCATCAAGCGTCTGCCCGTACCTGAGGCTCGTGCTTGTTGA 855 46.2 MKIVELEDAGNDRENEFGSGQIVMVDAKRALVGAGARILFYPTLLYNVLRNKMEAEFRWWDEVDQFLLLGAVPFPKDVPRLKKLGVGGVITLNEPYETLVPSSLYYRHGIDHLKIPTRDYCFAPKFSDISRAVDFIHRNASSGKTTYVHCKAGRGRSTTIVLCYLVKYKHMTPSAALEYVRSRRPRVLLAPSQWEAVQEYSNRGPITSSSSPSGGDAVLITKDDLEGYHGTCIDSAGRELAVVPRMGKSKPMIARLSCLFSSLIVHGSTGSLIKRLPVPEARAC 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2164830 2167840 - Lsi11G002100.1 Lsi11g00210 673377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00210 284 CDD PTPMT1 59 203 IPR044596 GO:0004721
Lsi11g00210 284 PANTHER - 1 284 - -
Lsi11g00210 284 PANTHER OS01G0739200 PROTEIN 1 284 - -
Lsi11g00210 284 SMART dsp_5 62 203 IPR020422 GO:0006470|GO:0008138
Lsi11g00210 284 ProSitePatterns Tyrosine specific protein phosphatases active site. 148 158 IPR016130 GO:0016311|GO:0016791
Lsi11g00210 284 ProSiteProfiles Dual specificity protein phosphatase domain profile. 59 206 IPR020422 GO:0006470|GO:0008138
Lsi11g00210 284 Pfam Dual specificity phosphatase, catalytic domain 99 202 IPR000340 GO:0008138|GO:0016311
Lsi11g00210 284 Gene3D Protein tyrosine phosphatase superfamily 59 204 IPR029021 -
Lsi11g00210 284 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 127 195 IPR000387 GO:0016311|GO:0016791
Lsi11g00210 284 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 52 201 IPR029021 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01277 Lsi-Chr7:18609281 Lsi11g00210 Lsi-Chr11:2164830 3.51E-76 dispersed
Lsi11g00210 Lsi-Chr11:2164830 Lsi11g01661 Lsi-Chr11:24894389 2.05E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00210 - - bhj:120080407 545.814