Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00216 ATGTCGTGGCAAACGTATGTCGATGATCATTTGATGTGCGACATTGATGGCCAAGGCCAGCACCTCACCGCCGCTGCCATTATCGGCCACGATGGCAGCGTCTGGGCTCAGAGCGCCTCATTTCCTCAGTTCAAGCCTGAGGAGATCACTGGTATCATGAAGGATTTCGATGAACCAGGTCATCTTGCACCTACTGGATTACACCTTGGAGGTACAAAGTATATGGTAATCCAAGGAGAGCCTGGAGCGGTCATCCGTGGAAAGAAGGGATCTGGAGGAATTACCATAAAGAAGACTGGTCAAGCTCTAGTCTTTGGAATTTATGAAGAACCTGTTACTCCAGGACAGTGCAACATGGTCGTTGAGAGGCTGGGCGATTACCTCGTCGATCAGGGTCTGTAG 402 50.25 MSWQTYVDDHLMCDIDGQGQHLTAAAIIGHDGSVWAQSASFPQFKPEEITGIMKDFDEPGHLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMVVERLGDYLVDQGL 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2216057 2218025 + Lsi11G002160.1 Lsi11g00216 673383

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00216 133 PRINTS Plant profilin signature 29 42 IPR005455 GO:0003779
Lsi11g00216 133 PRINTS Plant profilin signature 73 82 IPR005455 GO:0003779
Lsi11g00216 133 PRINTS Plant profilin signature 119 132 IPR005455 GO:0003779
Lsi11g00216 133 PRINTS Plant profilin signature 54 68 IPR005455 GO:0003779
Lsi11g00216 133 PRINTS Plant profilin signature 106 119 IPR005455 GO:0003779
Lsi11g00216 133 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Lsi11g00216 133 PRINTS Plant profilin signature 86 101 IPR005455 GO:0003779
Lsi11g00216 133 Gene3D Dynein light chain 2a, cytoplasmic 1 133 - -
Lsi11g00216 133 PRINTS Profilin signature 42 62 IPR005455 GO:0003779
Lsi11g00216 133 PRINTS Profilin signature 66 80 IPR005455 GO:0003779
Lsi11g00216 133 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Lsi11g00216 133 PRINTS Profilin signature 102 115 IPR005455 GO:0003779
Lsi11g00216 133 PRINTS Profilin signature 115 132 IPR005455 GO:0003779
Lsi11g00216 133 PRINTS Profilin signature 23 32 IPR005455 GO:0003779
Lsi11g00216 133 PANTHER PROFILIN 1 133 IPR005455 GO:0003779
Lsi11g00216 133 Pfam Profilin 1 132 IPR005455 GO:0003779
Lsi11g00216 133 SUPERFAMILY Profilin (actin-binding protein) 2 132 IPR036140 -
Lsi11g00216 133 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Lsi11g00216 133 PANTHER PROFILIN 1 133 - -
Lsi11g00216 133 CDD PROF 2 132 IPR005455 GO:0003779
Lsi11g00216 133 SMART prof_2 1 133 IPR005455 GO:0003779
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00216 K05759 PFN; profilin - twl:120006331 262.307
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02980 Lsi-Chr2:35886922 Lsi11g00216 Lsi-Chr11:2216057 3.17E-82 dispersed
Lsi11g00216 Lsi-Chr11:2216057 Lsi11g00217 Lsi-Chr11:2219045 5.56E-74 tandem
Lsi11g00216 Lsi-Chr11:2216057 Lsi07g00531 Lsi-Chr7:5651707 2.23E-77 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g251 . . . . Bpe01g00568 Bpe02g02225 . Bma11g00549 . . . . Car05g01289 . . . . . . . . . . . . . . . . . . . . Cone4ag0756 . . Csa02g00079 Chy05g01410 . Blo08g00324 . Bda02g00405 . Bpe08g00505 . . . Sed11g0035 Cmo05g01378 . . . . . Cpe11g01145 . Bhi06g01686 Tan08g0107 Cmetu05g1788 . Hepe08g2631 . . . . . . . . . Lsi11g00216 . . Cme05g02014
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi10g01374 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.4e-213 738.8
Lsi10g00709 CCT 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.4e-213 738.0
Lsi04g00880 CCT 1 377 Cytoskeleton Gene Families AT2G37620 95.8 5.3e-213 736.9
Lsi03g00810 . 1 377 Cytoskeleton Gene Families AT2G37620 94.4 2.6e-212 734.6
Lsi02g01634 . 1 384 Cytoskeleton Gene Families AT2G37620 94.0 3.2e-210 727.6
Lsi03g01737 . 96 562 Cytoskeleton Gene Families AT2G37620 78.2 3.8e-203 704.1
Lsi01g01130 CCT 1 356 Cytoskeleton Gene Families AT2G37620 95.8 5.1e-200 693.7
Lsi01g01425 . 7 354 Cytoskeleton Gene Families AT2G37620 97.1 1.1e-197 686.0
Lsi10g01374 . 1 377 Cytoskeleton Gene Families AT5G59370 96.8 1.8e-213 738.4
Lsi04g00880 CCT 1 377 Cytoskeleton Gene Families AT5G59370 96.3 4.1e-213 737.3
Lsi02g01634 . 1 384 Cytoskeleton Gene Families AT5G59370 95.1 5.9e-212 733.4
Lsi03g00810 . 1 377 Cytoskeleton Gene Families AT5G59370 94.2 6.5e-211 729.9
Lsi10g00709 CCT 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.2e-210 727.6
Lsi03g01737 . 96 562 Cytoskeleton Gene Families AT5G59370 78.4 3.2e-202 701.0
Lsi01g01130 CCT 1 356 Cytoskeleton Gene Families AT5G59370 94.7 6.9e-197 683.3
Lsi01g01425 . 7 354 Cytoskeleton Gene Families AT5G59370 96.8 1.0e-195 679.5
Lsi04g00880 CCT 1 377 Cytoskeleton Gene Families AT3G46520 96.6 1.8e-213 738.4
Lsi10g01374 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 5.3e-213 736.9
Lsi02g01634 . 1 384 Cytoskeleton Gene Families AT3G46520 95.3 2.6e-212 734.6
Lsi03g00810 . 1 377 Cytoskeleton Gene Families AT3G46520 94.4 2.9e-211 731.1
Lsi10g00709 CCT 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.4e-210 728.8
Lsi03g01737 . 96 562 Cytoskeleton Gene Families AT3G46520 78.6 1.4e-202 702.2
Lsi01g01130 CCT 1 356 Cytoskeleton Gene Families AT3G46520 94.9 3.1e-197 684.5
Lsi01g01425 . 7 354 Cytoskeleton Gene Families AT3G46520 97.1 4.5e-196 680.6
Lsi04g00880 CCT 1 377 Cytoskeleton Gene Families AT3G12110 96.8 1.3e-214 742.3
Lsi10g01374 . 1 377 Cytoskeleton Gene Families AT3G12110 96.3 6.3e-214 740.0
Lsi10g00709 CCT 1 377 Cytoskeleton Gene Families AT3G12110 95.5 9.0e-213 736.1
Lsi03g00810 . 1 377 Cytoskeleton Gene Families AT3G12110 95.2 2.0e-212 734.9
Lsi02g01634 . 1 384 Cytoskeleton Gene Families AT3G12110 94.3 5.0e-211 730.3
Lsi03g01737 . 96 562 Cytoskeleton Gene Families AT3G12110 78.4 1.7e-203 705.3
Lsi01g01130 CCT 1 356 Cytoskeleton Gene Families AT3G12110 95.8 2.0e-199 691.8
Lsi01g01425 . 7 354 Cytoskeleton Gene Families AT3G12110 96.8 5.3e-197 683.7
Lsi10g00709 CCT 1 377 Cytoskeleton Gene Families AT3G18780 93.1 4.6e-209 723.8
Lsi04g00880 CCT 1 377 Cytoskeleton Gene Families AT3G18780 92.0 6.7e-208 719.9
Lsi03g00810 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 8.7e-208 719.5
Lsi10g01374 . 1 377 Cytoskeleton Gene Families AT3G18780 91.8 3.3e-207 717.6
Lsi02g01634 . 1 384 Cytoskeleton Gene Families AT3G18780 90.9 7.4e-207 716.5
Lsi03g01737 . 96 562 Cytoskeleton Gene Families AT3G18780 74.5 9.1e-197 682.9
Lsi01g01130 CCT 1 356 Cytoskeleton Gene Families AT3G18780 93.5 4.5e-196 680.6
Lsi01g01425 . 7 354 Cytoskeleton Gene Families AT3G18780 92.8 8.8e-192 666.4
Lsi10g00709 CCT 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.6e-209 725.3
Lsi04g00880 CCT 1 377 Cytoskeleton Gene Families AT1G49240 92.3 2.3e-208 721.5
Lsi03g00810 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 3.0e-208 721.1
Lsi02g01634 . 1 384 Cytoskeleton Gene Families AT1G49240 91.1 2.5e-207 718.0
Lsi10g01374 . 1 377 Cytoskeleton Gene Families AT1G49240 91.5 7.4e-207 716.5
Lsi03g01737 . 96 562 Cytoskeleton Gene Families AT1G49240 74.7 3.1e-197 684.5
Lsi01g01130 CCT 1 356 Cytoskeleton Gene Families AT1G49240 93.8 1.5e-196 682.2
Lsi01g01425 . 7 354 Cytoskeleton Gene Families AT1G49240 92.8 8.8e-192 666.4
Lsi10g00709 CCT 1 377 Cytoskeleton Gene Families AT5G09810 98.4 7.9e-217 749.6
Lsi03g00810 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 2.1e-214 741.5
Lsi04g00880 CCT 1 377 Cytoskeleton Gene Families AT5G09810 95.8 9.0e-213 736.1
Lsi10g01374 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 1.2e-212 735.7
Lsi02g01634 . 1 384 Cytoskeleton Gene Families AT5G09810 93.8 9.3e-210 726.1
Lsi01g01130 CCT 1 356 Cytoskeleton Gene Families AT5G09810 98.6 2.9e-203 704.5
Lsi03g01737 . 96 562 Cytoskeleton Gene Families AT5G09810 77.9 3.2e-202 701.0
Lsi01g01425 . 7 354 Cytoskeleton Gene Families AT5G09810 96.6 2.6e-196 681.4
Lsi11g00216 . 1 133 Cytoskeleton Gene Families AT2G19760 77.4 3.8e-57 217.6
Lsi02g02980 CCT,ECH 1 131 Cytoskeleton Gene Families AT2G19760 73.3 5.4e-56 213.8
Lsi11g00217 . 1 148 Cytoskeleton Gene Families AT2G19760 68.9 1.0e-54 209.5
Lsi07g00531 CCT,ECH 1 129 Cytoskeleton Gene Families AT2G19760 73.6 3.9e-54 207.6
Lsi04g02319 . 45 175 Cytoskeleton Gene Families AT2G19760 73.3 5.1e-54 207.2
Lsi11g00216 . 1 133 Cytoskeleton Gene Families AT4G29350 75.9 3.2e-56 214.5
Lsi02g02980 CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29350 74.8 3.2e-56 214.5
Lsi11g00217 . 1 148 Cytoskeleton Gene Families AT4G29350 69.6 3.9e-54 207.6
Lsi07g00531 CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29350 71.0 2.5e-53 204.9
Lsi04g02319 . 45 175 Cytoskeleton Gene Families AT4G29350 71.8 4.8e-52 200.7
Lsi11g00217 . 1 92 Cytoskeleton Gene Families AT5G56600 73.9 4.2e-38 154.1
Lsi11g00216 . 1 133 Cytoskeleton Gene Families AT4G29340 85.1 6.6e-65 243.4
Lsi02g02980 CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29340 76.1 7.0e-59 223.4
Lsi04g02319 . 45 175 Cytoskeleton Gene Families AT4G29340 71.6 7.5e-53 203.4
Lsi11g00217 . 1 148 Cytoskeleton Gene Families AT4G29340 63.6 9.8e-53 203.0
Lsi07g00531 CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29340 67.9 6.4e-52 200.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000501 4 6 1 4 4 2 6 4 2 3 2 1 3 3 3 6 2 7 7 3 3 3 2 4 5 5 3 6 4 4 112
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g00216 Lsi_Chr11 FPKM 2.23435 1.160311 0.588515 0.71441 4.088753 3.742531 3.859812 0.0 0.119728 0.0