Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00216 ATGTCGTGGCAAACGTATGTCGATGATCATTTGATGTGCGACATTGATGGCCAAGGCCAGCACCTCACCGCCGCTGCCATTATCGGCCACGATGGCAGCGTCTGGGCTCAGAGCGCCTCATTTCCTCAGTTCAAGCCTGAGGAGATCACTGGTATCATGAAGGATTTCGATGAACCAGGTCATCTTGCACCTACTGGATTACACCTTGGAGGTACAAAGTATATGGTAATCCAAGGAGAGCCTGGAGCGGTCATCCGTGGAAAGAAGGGATCTGGAGGAATTACCATAAAGAAGACTGGTCAAGCTCTAGTCTTTGGAATTTATGAAGAACCTGTTACTCCAGGACAGTGCAACATGGTCGTTGAGAGGCTGGGCGATTACCTCGTCGATCAGGGTCTGTAG 402 50.25 MSWQTYVDDHLMCDIDGQGQHLTAAAIIGHDGSVWAQSASFPQFKPEEITGIMKDFDEPGHLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMVVERLGDYLVDQGL 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2216057 2218025 + Lsi11G002160.1 Lsi11g00216 673383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00216 133 PRINTS Plant profilin signature 29 42 IPR005455 GO:0003779
Lsi11g00216 133 PRINTS Plant profilin signature 73 82 IPR005455 GO:0003779
Lsi11g00216 133 PRINTS Plant profilin signature 119 132 IPR005455 GO:0003779
Lsi11g00216 133 PRINTS Plant profilin signature 54 68 IPR005455 GO:0003779
Lsi11g00216 133 PRINTS Plant profilin signature 106 119 IPR005455 GO:0003779
Lsi11g00216 133 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Lsi11g00216 133 PRINTS Plant profilin signature 86 101 IPR005455 GO:0003779
Lsi11g00216 133 Gene3D Dynein light chain 2a, cytoplasmic 1 133 - -
Lsi11g00216 133 PRINTS Profilin signature 42 62 IPR005455 GO:0003779
Lsi11g00216 133 PRINTS Profilin signature 66 80 IPR005455 GO:0003779
Lsi11g00216 133 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Lsi11g00216 133 PRINTS Profilin signature 102 115 IPR005455 GO:0003779
Lsi11g00216 133 PRINTS Profilin signature 115 132 IPR005455 GO:0003779
Lsi11g00216 133 PRINTS Profilin signature 23 32 IPR005455 GO:0003779
Lsi11g00216 133 PANTHER PROFILIN 1 133 IPR005455 GO:0003779
Lsi11g00216 133 Pfam Profilin 1 132 IPR005455 GO:0003779
Lsi11g00216 133 SUPERFAMILY Profilin (actin-binding protein) 2 132 IPR036140 -
Lsi11g00216 133 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Lsi11g00216 133 PANTHER PROFILIN 1 133 - -
Lsi11g00216 133 CDD PROF 2 132 IPR005455 GO:0003779
Lsi11g00216 133 SMART prof_2 1 133 IPR005455 GO:0003779
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02980 Lsi-Chr2:35886922 Lsi11g00216 Lsi-Chr11:2216057 3.17E-82 dispersed
Lsi11g00216 Lsi-Chr11:2216057 Lsi11g00217 Lsi-Chr11:2219045 5.56E-74 tandem
Lsi11g00216 Lsi-Chr11:2216057 Lsi07g00531 Lsi-Chr7:5651707 2.23E-77 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00216 K05759 - twl:120006331 262.307