Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00217 ATGTCGTGGCAAGTTTACGTCGATGATCATTTGATGTGCGAAATTGAGGGCAATCACCTCACATCTGCGGCCATTATCGGCCATGATGGCAGCGTTTGGGCTAAAAGCGAAAATTTCCCTCAGCTCAAGCCTGAAGAAATTACTGGCATCTTGAATGACTTCAATGAACCAGGGACGCTTGCTCCAACTGGTTTGTACATTGGTGGTTCAAAATATATGGTAATCCAAGGGGAGCCTGGAGCTGTTATTCGTGGGAAGAAGGTGATGAACTTTTATATTGTATCTGAATATGAGAACCTTCATCCTAGATTAGGCCCAGGTGGGGTTACTGTTAAGAAGACTGGTCTGGCTTTAGTCATTGGCATCTATGATGAACCAATGACTCCTGGTCAGTGCAATATGATTGTTGAAAGGCTTGGGGATTATCTCATCGAACAGGGCCTCTAA 447 44.52 MSWQVYVDDHLMCEIEGNHLTSAAIIGHDGSVWAKSENFPQLKPEEITGILNDFNEPGTLAPTGLYIGGSKYMVIQGEPGAVIRGKKVMNFYIVSEYENLHPRLGPGGVTVKKTGLALVIGIYDEPMTPGQCNMIVERLGDYLIEQGL 148
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2219045 2221696 + Lsi11G002170.1 Lsi11g00217 673384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00217 148 CDD PROF 2 147 IPR005455 GO:0003779
Lsi11g00217 148 SMART prof_2 1 148 IPR005455 GO:0003779
Lsi11g00217 148 PANTHER PROFILIN-2 1 88 - -
Lsi11g00217 148 PANTHER PROFILIN-2 103 148 - -
Lsi11g00217 148 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779
Lsi11g00217 148 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779
Lsi11g00217 148 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Lsi11g00217 148 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Lsi11g00217 148 Pfam Profilin 1 147 IPR005455 GO:0003779
Lsi11g00217 148 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Lsi11g00217 148 PRINTS Profilin signature 72 86 IPR005455 GO:0003779
Lsi11g00217 148 PRINTS Profilin signature 130 147 IPR005455 GO:0003779
Lsi11g00217 148 PRINTS Profilin signature 21 30 IPR005455 GO:0003779
Lsi11g00217 148 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Lsi11g00217 148 PRINTS Profilin signature 117 130 IPR005455 GO:0003779
Lsi11g00217 148 SUPERFAMILY Profilin (actin-binding protein) 2 147 IPR036140 -
Lsi11g00217 148 Gene3D Dynein light chain 2a, cytoplasmic 1 148 - -
Lsi11g00217 148 PANTHER PROFILIN 103 148 IPR005455 GO:0003779
Lsi11g00217 148 PANTHER PROFILIN 1 88 IPR005455 GO:0003779
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02319 Lsi-Chr4:30391453 Lsi11g00217 Lsi-Chr11:2219045 2.19E-72 dispersed
Lsi07g00531 Lsi-Chr7:5651707 Lsi11g00217 Lsi-Chr11:2219045 2.27E-68 dispersed
Lsi11g00216 Lsi-Chr11:2216057 Lsi11g00217 Lsi-Chr11:2219045 5.56E-74 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00217 K05759 - cit:102628130 247.284